Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:12762687-13033154

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zscan18 7 12768090 to 12803635 35545 - protein coding gene zinc finger and SCAN domain containing 18
Cpgi18315 7 12779893 to 12781118 1225 CpG island CpG island 18315
Tssr70621 7 12780607 to 12780679 72 - TSS region transcription start site region 70621
1700047O18Rik 7 12780860 to 12781602 742 + unclassified gene RIKEN cDNA 1700047O18 gene
Gm4247 7 12793828 to 12794869 1041 - pseudogene predicted gene 4247
Gm18194 7 12796855 to 12797491 636 - pseudogene predicted gene, 18194
Gm45315 7 12797529 to 12797861 332 + pseudogene predicted gene 45315
Cpgi18316 7 12803219 to 12803956 737 CpG island CpG island 18316
A930003G23Rik 7 12803545 to 12804778 1233 unclassified gene RIKEN cDNA A930003G23 gene
Tssr70622 7 12803607 to 12803644 37 - TSS region transcription start site region 70622
Zfp329 7 12804977 to 12818858 13881 - protein coding gene zinc finger protein 329
Tssr70623 7 12807309 to 12807314 5 - TSS region transcription start site region 70623
Cpgi18317 7 12818398 to 12819011 613 CpG island CpG island 18317
Tssr70624 7 12818837 to 12818865 28 - TSS region transcription start site region 70624
Tssr70625 7 12818866 to 12818871 5 - TSS region transcription start site region 70625
Gm45593 7 12825918 to 12828121 2203 + lincRNA gene predicted gene 45593
Cpgi18318 7 12834551 to 12835419 868 CpG island CpG island 18318
Tssr64479 7 12834743 to 12834811 68 + TSS region transcription start site region 64479
Zfp110 7 12834810 to 12850584 15774 + protein coding gene zinc finger protein 110
Tssr64480 7 12834973 to 12835052 79 + TSS region transcription start site region 64480
Tssr64481 7 12835248 to 12835261 13 + TSS region transcription start site region 64481
Tssr64482 7 12835950 to 12835954 4 + TSS region transcription start site region 64482
Gm31152 7 12864284 to 12869804 5520 - lincRNA gene predicted gene, 31152
Gm45971 7 12870869 to 12873480 2611 - lncRNA gene predicted gene, 45971
Cpgi18319 7 12880840 to 12881677 837 CpG island CpG island 18319
Tssr64483 7 12881165 to 12881204 39 + TSS region transcription start site region 64483
Zfp128 7 12881178 to 12893422 12244 + protein coding gene zinc finger protein 128
Cpgi18320 7 12897687 to 12898154 467 CpG island CpG island 18320
Tssr64484 7 12897800 to 12897885 85 + TSS region transcription start site region 64484
Zscan22 7 12897815 to 12909083 11268 + protein coding gene zinc finger and SCAN domain containing 22
Cpgi18321 7 12910150 to 12910624 474 CpG island CpG island 18321
Cpgi18322 7 12921680 to 12922785 1105 CpG island CpG island 18322
Tssr70626 7 12922070 to 12922096 26 - TSS region transcription start site region 70626
Rps5 7 12922311 to 12926686 4375 + protein coding gene ribosomal protein S5
Tssr64485 7 12922315 to 12922320 5 + TSS region transcription start site region 64485
Tssr64486 7 12922954 to 12922972 18 + TSS region transcription start site region 64486
Tssr64487 7 12925405 to 12925428 23 + TSS region transcription start site region 64487
Tssr64488 7 12925439 to 12925455 16 + TSS region transcription start site region 64488
Tssr64489 7 12925489 to 12925504 15 + TSS region transcription start site region 64489
Tssr64490 7 12925516 to 12925530 14 + TSS region transcription start site region 64490
Tssr64491 7 12925729 to 12925742 13 + TSS region transcription start site region 64491
Tssr64492 7 12925746 to 12925770 24 + TSS region transcription start site region 64492
Tssr70627 7 12926676 to 12926688 12 - TSS region transcription start site region 70627
Tssr64493 7 12927341 to 12927350 9 + TSS region transcription start site region 64493
Tssr64494 7 12927387 to 12927402 15 + TSS region transcription start site region 64494
Tssr64495 7 12927410 to 12927439 29 + TSS region transcription start site region 64495
Rnf225 7 12927416 to 12931072 3656 + protein coding gene ring finger protein 225
Cpgi18323 7 12927888 to 12928907 1019 CpG island CpG island 18323
Tssr64496 7 12928268 to 12928300 32 + TSS region transcription start site region 64496
Tssr64497 7 12928306 to 12928328 22 + TSS region transcription start site region 64497
Gm26325 7 12930774 to 12930880 106 + snRNA gene predicted gene, 26325
1810019N24Rik 7 12948592 to 12961768 13176 - lincRNA gene RIKEN cDNA 1810019N24 gene
Cpgi18324 7 12949332 to 12950118 786 CpG island CpG island 18324
Tssr64498 7 12949764 to 12949776 12 + TSS region transcription start site region 64498
Gm29638 7 12959299 to 12961887 2588 + lincRNA gene predicted gene 29638
Cpgi18325 7 12961515 to 12962071 556 CpG island CpG island 18325
Tssr70628 7 12961808 to 12961827 19 - TSS region transcription start site region 70628
Tssr64499 7 12962009 to 12962022 13 + TSS region transcription start site region 64499
Cpgi18326 7 12965713 to 12966454 741 CpG island CpG island 18326
Tssr64500 7 12965831 to 12965894 63 + TSS region transcription start site region 64500
Zfp324 7 12965838 to 12974236 8398 + protein coding gene zinc finger protein 324
Tssr64501 7 12965962 to 12965973 11 + TSS region transcription start site region 64501
Tssr64502 7 12966230 to 12966261 31 + TSS region transcription start site region 64502
Cpgi18327 7 12970751 to 12971592 841 CpG island CpG island 18327
Cpgi18328 7 12977692 to 12978530 838 CpG island CpG island 18328
Tssr64503 7 12977834 to 12977900 66 + TSS region transcription start site region 64503
Zfp446 7 12977848 to 12985714 7866 + protein coding gene zinc finger protein 446
Tssr64504 7 12978212 to 12978232 20 + TSS region transcription start site region 64504
Tssr64505 7 12978277 to 12978285 8 + TSS region transcription start site region 64505
Tssr64506 7 12978323 to 12978338 15 + TSS region transcription start site region 64506
Tssr64507 7 12978344 to 12978355 11 + TSS region transcription start site region 64507
Slc27a5 7 12988346 to 12998192 9846 - protein coding gene solute carrier family 27 (fatty acid transporter), member 5
Tssr70629 7 12991621 to 12991625 4 - TSS region transcription start site region 70629
Tssr70630 7 12997416 to 12997453 37 - TSS region transcription start site region 70630
Tssr70631 7 12997667 to 12997671 4 - TSS region transcription start site region 70631
Tssr70632 7 12998110 to 12998125 15 - TSS region transcription start site region 70632
Tssr70633 7 12998140 to 12998171 31 - TSS region transcription start site region 70633
Tssr70634 7 12998172 to 12998210 38 - TSS region transcription start site region 70634
Tssr2079 7 12999076 to 12999090 14 + TSS region transcription start site region 2079
Tssr64508 7 12999121 to 12999130 9 + TSS region transcription start site region 64508
Zbtb45 7 13005666 to 13010168 4502 - protein coding gene zinc finger and BTB domain containing 45
Cpgi18329 7 13006029 to 13006451 422 CpG island CpG island 18329
Cpgi18330 7 13006944 to 13007152 208 CpG island CpG island 18330
Cpgi18331 7 13007484 to 13008361 877 CpG island CpG island 18331
Cpgi18332 7 13009456 to 13010102 646 CpG island CpG island 18332
Tssr70635 7 13009795 to 13009856 61 - TSS region transcription start site region 70635
Tssr70636 7 13009991 to 13010031 40 - TSS region transcription start site region 70636
Tssr70637 7 13010034 to 13010054 20 - TSS region transcription start site region 70637
Tssr64509 7 13010128 to 13010135 7 + TSS region transcription start site region 64509
Tssr70638 7 13013874 to 13013899 25 - TSS region transcription start site region 70638
Tssr70639 7 13014240 to 13014274 34 - TSS region transcription start site region 70639
Tssr70640 7 13014282 to 13014301 19 - TSS region transcription start site region 70640
Tssr64510 7 13014744 to 13014757 13 + TSS region transcription start site region 64510
Tssr64511 7 13016850 to 13016858 8 + TSS region transcription start site region 64511
Cpgi18333 7 13023111 to 13025440 2329 CpG island CpG island 18333
Tssr70641 7 13023205 to 13023223 18 - TSS region transcription start site region 70641
Tssr64512 7 13023354 to 13023367 13 + TSS region transcription start site region 64512
Tssr64513 7 13023378 to 13023396 18 + TSS region transcription start site region 64513
Gm31649 7 13023708 to 13024678 970 - protein coding gene predicted gene, 31649
Tssr64514 7 13024120 to 13024188 68 + TSS region transcription start site region 64514
Trim28 7 13024152 to 13031032 6880 + protein coding gene tripartite motif-containing 28
Tssr64515 7 13024368 to 13024383 15 + TSS region transcription start site region 64515
Tssr64516 7 13024392 to 13024421 29 + TSS region transcription start site region 64516
Tssr64517 7 13024654 to 13024667 13 + TSS region transcription start site region 64517
Tssr64518 7 13024669 to 13024720 51 + TSS region transcription start site region 64518
Tssr64519 7 13025653 to 13025680 27 + TSS region transcription start site region 64519
Tssr64520 7 13025734 to 13025743 9 + TSS region transcription start site region 64520
Tssr64521 7 13027897 to 13027910 13 + TSS region transcription start site region 64521
Tssr64522 7 13029549 to 13029569 20 + TSS region transcription start site region 64522
Tssr64523 7 13029674 to 13029717 43 + TSS region transcription start site region 64523
Tssr64524 7 13029772 to 13029789 17 + TSS region transcription start site region 64524
Tssr64525 7 13029856 to 13029868 12 + TSS region transcription start site region 64525
Tssr64526 7 13029873 to 13029888 15 + TSS region transcription start site region 64526
Tssr64527 7 13030079 to 13030103 24 + TSS region transcription start site region 64527
Tssr64528 7 13030126 to 13030143 17 + TSS region transcription start site region 64528
Tssr64529 7 13030327 to 13030339 12 + TSS region transcription start site region 64529
Tssr64530 7 13030462 to 13030473 11 + TSS region transcription start site region 64530
Tssr64531 7 13030475 to 13030493 18 + TSS region transcription start site region 64531
Tssr64532 7 13030508 to 13030537 29 + TSS region transcription start site region 64532
Tssr64533 7 13030954 to 13030966 12 + TSS region transcription start site region 64533
Chmp2a 7 13032006 to 13034777 2771 - protein coding gene charged multivesicular body protein 2A