Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:127510226-127720269

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700008J07Rik 7 127510438 to 127512869 2431 - antisense lncRNA gene RIKEN cDNA 1700008J07 gene
Cpgi19752 7 127511609 to 127513045 1436 CpG island CpG island 19752
Tssr69243 7 127511976 to 127512075 99 + TSS region transcription start site region 69243
Srcap 7 127511983 to 127561219 49236 + protein coding gene Snf2-related CREBBP activator protein
Tssr69244 7 127512081 to 127512090 9 + TSS region transcription start site region 69244
Tssr69245 7 127512091 to 127512102 11 + TSS region transcription start site region 69245
Tssr75006 7 127512231 to 127512242 11 - TSS region transcription start site region 75006
Tssr75007 7 127512308 to 127512326 18 - TSS region transcription start site region 75007
Tssr75008 7 127512333 to 127512387 54 - TSS region transcription start site region 75008
Tssr69246 7 127512403 to 127512496 93 + TSS region transcription start site region 69246
Tssr75009 7 127512406 to 127512417 11 - TSS region transcription start site region 75009
Tssr75010 7 127512836 to 127512869 33 - TSS region transcription start site region 75010
Gm42715 7 127519584 to 127567054 47470 + protein coding gene predicted gene 42715
Tssr69247 7 127519652 to 127519670 18 + TSS region transcription start site region 69247
Tssr69248 7 127520085 to 127520090 5 + TSS region transcription start site region 69248
Tssr69249 7 127525134 to 127525138 4 + TSS region transcription start site region 69249
Snora30 7 127527897 to 127528003 106 + snoRNA gene small nucleolar RNA, H/ACA box 30
Tssr69250 7 127530217 to 127530237 20 + TSS region transcription start site region 69250
Tssr69251 7 127541303 to 127541325 22 + TSS region transcription start site region 69251
Tssr69252 7 127543195 to 127543225 30 + TSS region transcription start site region 69252
Gm28198 7 127559142 to 127573116 13974 - antisense lncRNA gene predicted gene 28198
Tmem265 7 127561223 to 127565271 4048 + protein coding gene transmembrane protein 265
Tssr69253 7 127561730 to 127561742 12 + TSS region transcription start site region 69253
Tssr2407 7 127561751 to 127561764 13 + TSS region transcription start site region 2407
Tssr69254 7 127565477 to 127565480 3 + TSS region transcription start site region 69254
Cpgi19753 7 127573096 to 127573279 183 CpG island CpG island 19753
Tssr69255 7 127573345 to 127573368 23 + TSS region transcription start site region 69255
Phkg2 7 127573345 to 127583307 9962 + protein coding gene phosphorylase kinase, gamma 2 (testis)
Tssr69256 7 127573376 to 127573437 61 + TSS region transcription start site region 69256
Tssr69257 7 127573546 to 127573611 65 + TSS region transcription start site region 69257
Cpgi19754 7 127573621 to 127573782 161 CpG island CpG island 19754
Tssr69258 7 127573636 to 127573660 24 + TSS region transcription start site region 69258
Tssr69259 7 127573678 to 127573683 5 + TSS region transcription start site region 69259
Tssr69260 7 127573720 to 127573737 17 + TSS region transcription start site region 69260
Tssr69261 7 127573864 to 127573873 9 + TSS region transcription start site region 69261
Gm46028 7 127576018 to 127579244 3226 - lncRNA gene predicted gene, 46028
Ccdc189 7 127582383 to 127588595 6212 - protein coding gene coiled-coil domain containing 189
Tssr75011 7 127585171 to 127585208 37 - TSS region transcription start site region 75011
Tssr69262 7 127585313 to 127585326 13 + TSS region transcription start site region 69262
Cpgi19755 7 127587883 to 127589266 1383 CpG island CpG island 19755
Tssr75012 7 127588119 to 127588142 23 - TSS region transcription start site region 75012
Tssr75013 7 127588145 to 127588190 45 - TSS region transcription start site region 75013
Tssr75014 7 127588194 to 127588218 24 - TSS region transcription start site region 75014
Tssr75015 7 127588237 to 127588250 13 - TSS region transcription start site region 75015
Tssr75016 7 127588265 to 127588278 13 - TSS region transcription start site region 75016
Rnf40 7 127588698 to 127603605 14907 + protein coding gene ring finger protein 40
Tssr69263 7 127588714 to 127588725 11 + TSS region transcription start site region 69263
Tssr69264 7 127588739 to 127588791 52 + TSS region transcription start site region 69264
Gm44759 7 127590416 to 127595900 5484 - antisense lncRNA gene predicted gene 44759
Tssr69265 7 127598665 to 127598668 3 + TSS region transcription start site region 69265
Tssr69266 7 127603190 to 127603209 19 + TSS region transcription start site region 69266
1700120K04Rik 7 127603903 to 127604445 542 - antisense lncRNA gene RIKEN cDNA 1700120K04 gene
Tssr75017 7 127604416 to 127604450 34 - TSS region transcription start site region 75017
Tssr75018 7 127604454 to 127604465 11 - TSS region transcription start site region 75018
Zfp629 7 127607031 to 127615785 8754 - protein coding gene zinc finger protein 629
Cpgi19756 7 127611042 to 127612180 1138 CpG island CpG island 19756
Cpgi19757 7 127614211 to 127615688 1477 CpG island CpG island 19757
Tssr75019 7 127615208 to 127615219 11 - TSS region transcription start site region 75019
Tssr75020 7 127615226 to 127615269 43 - TSS region transcription start site region 75020
Cpgi19758 7 127636960 to 127637306 346 CpG island CpG island 19758
Gm39089 7 127647905 to 127651409 3504 - lncRNA gene predicted gene, 39089
Tssr75021 7 127649345 to 127649355 10 - TSS region transcription start site region 75021
Tssr75022 7 127649370 to 127649371 1 - TSS region transcription start site region 75022
Tssr69267 7 127652125 to 127652130 5 + TSS region transcription start site region 69267
Cpgi19759 7 127652159 to 127652430 271 CpG island CpG island 19759
Gm44760 7 127657062 to 127658234 1172 - unclassified gene predicted gene 44760
Bcl7c 7 127661456 to 127708933 47477 - protein coding gene B cell CLL/lymphoma 7C
Tssr75023 7 127686826 to 127686840 14 - TSS region transcription start site region 75023
Tssr69268 7 127691658 to 127691668 10 + TSS region transcription start site region 69268
Tssr69269 7 127691924 to 127691984 60 + TSS region transcription start site region 69269
Gm39090 7 127691935 to 127700793 8858 + lincRNA gene predicted gene, 39090
Cpgi19760 7 127707903 to 127709217 1314 CpG island CpG island 19760
Tssr75024 7 127708050 to 127708084 34 - TSS region transcription start site region 75024
Tssr75025 7 127708098 to 127708118 20 - TSS region transcription start site region 75025
Mir762 7 127708487 to 127708562 75 + miRNA gene microRNA 762
Tssr75026 7 127708585 to 127708602 17 - TSS region transcription start site region 75026
Tssr75027 7 127708620 to 127708665 45 - TSS region transcription start site region 75027
Tssr75028 7 127708680 to 127708706 26 - TSS region transcription start site region 75028
Tssr75029 7 127708738 to 127708791 53 - TSS region transcription start site region 75029
Tssr75030 7 127708849 to 127708877 28 - TSS region transcription start site region 75030
Tssr75031 7 127708886 to 127708918 32 - TSS region transcription start site region 75031
Tssr69270 7 127712709 to 127712745 36 + TSS region transcription start site region 69270
Ctf1 7 127712736 to 127718192 5456 + protein coding gene cardiotrophin 1
Cpgi19761 7 127713063 to 127713272 209 CpG island CpG island 19761
Cpgi19762 7 127716916 to 127717594 678 CpG island CpG island 19762
Ctf2 7 127718960 to 127725616 6656 - protein coding gene cardiotrophin 2