Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:12613219-12993956

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn2r54 7 12615233 to 12636134 20901 - protein coding gene vomeronasal 2, receptor 54
Vmn2r55 7 12651706 to 12684991 33285 - protein coding gene vomeronasal 2, receptor 55
Vmn2r56 7 12693860 to 12733320 39460 - protein coding gene vomeronasal 2, receptor 56
Gm6946 7 12742686 to 12743672 986 + pseudogene predicted gene 6946
Gm18205 7 12760708 to 12761548 840 + pseudogene predicted gene, 18205
Zscan18 7 12768090 to 12803635 35545 - protein coding gene zinc finger and SCAN domain containing 18
Cpgi18315 7 12779893 to 12781118 1225 CpG island CpG island 18315
Tssr70621 7 12780607 to 12780679 72 - TSS region transcription start site region 70621
1700047O18Rik 7 12780860 to 12781602 742 + unclassified gene RIKEN cDNA 1700047O18 gene
Gm4247 7 12793828 to 12794869 1041 - pseudogene predicted gene 4247
Gm18194 7 12796855 to 12797491 636 - pseudogene predicted gene, 18194
Gm45315 7 12797529 to 12797861 332 + pseudogene predicted gene 45315
Cpgi18316 7 12803219 to 12803956 737 CpG island CpG island 18316
A930003G23Rik 7 12803545 to 12804778 1233 unclassified gene RIKEN cDNA A930003G23 gene
Tssr70622 7 12803607 to 12803644 37 - TSS region transcription start site region 70622
Zfp329 7 12804977 to 12818858 13881 - protein coding gene zinc finger protein 329
Tssr70623 7 12807309 to 12807314 5 - TSS region transcription start site region 70623
Cpgi18317 7 12818398 to 12819011 613 CpG island CpG island 18317
Tssr70624 7 12818837 to 12818865 28 - TSS region transcription start site region 70624
Tssr70625 7 12818866 to 12818871 5 - TSS region transcription start site region 70625
Gm45593 7 12825918 to 12828121 2203 + lincRNA gene predicted gene 45593
Cpgi18318 7 12834551 to 12835419 868 CpG island CpG island 18318
Tssr64479 7 12834743 to 12834811 68 + TSS region transcription start site region 64479
Zfp110 7 12834810 to 12850584 15774 + protein coding gene zinc finger protein 110
Tssr64480 7 12834973 to 12835052 79 + TSS region transcription start site region 64480
Tssr64481 7 12835248 to 12835261 13 + TSS region transcription start site region 64481
Tssr64482 7 12835950 to 12835954 4 + TSS region transcription start site region 64482
Gm31152 7 12864284 to 12869804 5520 - lincRNA gene predicted gene, 31152
Gm45971 7 12870869 to 12873480 2611 - lncRNA gene predicted gene, 45971
Cpgi18319 7 12880840 to 12881677 837 CpG island CpG island 18319
Tssr64483 7 12881165 to 12881204 39 + TSS region transcription start site region 64483
Zfp128 7 12881178 to 12893422 12244 + protein coding gene zinc finger protein 128
Cpgi18320 7 12897687 to 12898154 467 CpG island CpG island 18320
Tssr64484 7 12897800 to 12897885 85 + TSS region transcription start site region 64484
Zscan22 7 12897815 to 12909083 11268 + protein coding gene zinc finger and SCAN domain containing 22
Cpgi18321 7 12910150 to 12910624 474 CpG island CpG island 18321
Cpgi18322 7 12921680 to 12922785 1105 CpG island CpG island 18322
Tssr70626 7 12922070 to 12922096 26 - TSS region transcription start site region 70626
Rps5 7 12922311 to 12926686 4375 + protein coding gene ribosomal protein S5
Tssr64485 7 12922315 to 12922320 5 + TSS region transcription start site region 64485
Tssr64486 7 12922954 to 12922972 18 + TSS region transcription start site region 64486
Tssr64487 7 12925405 to 12925428 23 + TSS region transcription start site region 64487
Tssr64488 7 12925439 to 12925455 16 + TSS region transcription start site region 64488
Tssr64489 7 12925489 to 12925504 15 + TSS region transcription start site region 64489
Tssr64490 7 12925516 to 12925530 14 + TSS region transcription start site region 64490
Tssr64491 7 12925729 to 12925742 13 + TSS region transcription start site region 64491
Tssr64492 7 12925746 to 12925770 24 + TSS region transcription start site region 64492
Tssr70627 7 12926676 to 12926688 12 - TSS region transcription start site region 70627
Tssr64493 7 12927341 to 12927350 9 + TSS region transcription start site region 64493
Tssr64494 7 12927387 to 12927402 15 + TSS region transcription start site region 64494
Tssr64495 7 12927410 to 12927439 29 + TSS region transcription start site region 64495
Rnf225 7 12927416 to 12931072 3656 + protein coding gene ring finger protein 225
Cpgi18323 7 12927888 to 12928907 1019 CpG island CpG island 18323
Tssr64496 7 12928268 to 12928300 32 + TSS region transcription start site region 64496
Tssr64497 7 12928306 to 12928328 22 + TSS region transcription start site region 64497
Gm26325 7 12930774 to 12930880 106 + snRNA gene predicted gene, 26325
1810019N24Rik 7 12948592 to 12961768 13176 - lincRNA gene RIKEN cDNA 1810019N24 gene
Cpgi18324 7 12949332 to 12950118 786 CpG island CpG island 18324
Tssr64498 7 12949764 to 12949776 12 + TSS region transcription start site region 64498
Gm29638 7 12959299 to 12961887 2588 + lincRNA gene predicted gene 29638
Cpgi18325 7 12961515 to 12962071 556 CpG island CpG island 18325
Tssr70628 7 12961808 to 12961827 19 - TSS region transcription start site region 70628
Tssr64499 7 12962009 to 12962022 13 + TSS region transcription start site region 64499
Cpgi18326 7 12965713 to 12966454 741 CpG island CpG island 18326
Tssr64500 7 12965831 to 12965894 63 + TSS region transcription start site region 64500
Zfp324 7 12965838 to 12974236 8398 + protein coding gene zinc finger protein 324
Tssr64501 7 12965962 to 12965973 11 + TSS region transcription start site region 64501
Tssr64502 7 12966230 to 12966261 31 + TSS region transcription start site region 64502
Cpgi18327 7 12970751 to 12971592 841 CpG island CpG island 18327
Cpgi18328 7 12977692 to 12978530 838 CpG island CpG island 18328
Tssr64503 7 12977834 to 12977900 66 + TSS region transcription start site region 64503
Zfp446 7 12977848 to 12985714 7866 + protein coding gene zinc finger protein 446
Tssr64504 7 12978212 to 12978232 20 + TSS region transcription start site region 64504
Tssr64505 7 12978277 to 12978285 8 + TSS region transcription start site region 64505
Tssr64506 7 12978323 to 12978338 15 + TSS region transcription start site region 64506
Tssr64507 7 12978344 to 12978355 11 + TSS region transcription start site region 64507
Slc27a5 7 12988346 to 12998192 9846 - protein coding gene solute carrier family 27 (fatty acid transporter), member 5
Tssr70629 7 12991621 to 12991625 4 - TSS region transcription start site region 70629