Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:123492312-129512351

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1485 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr21a 7 118151499 to 128365612 10214113 QTL leishmaniasis resistance 21a
Tsiq1 7 119885996 to 125542177 5656181 QTL T cell secretion of IL4 QTL 1
Bsbob2 7 122651440 to 129217600 6566160 QTL BSB obesity 2
Zkscan2 7 123475384 to 123500449 25065 - protein coding gene zinc finger with KRAB and SCAN domains 2
Cpgi19677 7 123499978 to 123501091 1113 CpG island CpG island 19677
Tssr74587 7 123500100 to 123500115 15 - TSS region transcription start site region 74587
Tssr74588 7 123500503 to 123500578 75 - TSS region transcription start site region 74588
Tssr2393 7 123543491 to 123543495 4 + TSS region transcription start site region 2393
Gm30335 7 123592022 to 123639762 47740 + lncRNA gene predicted gene, 30335
Tssr68956 7 123819945 to 123819947 2 + TSS region transcription start site region 68956
Gm23788 7 123942104 to 123942209 105 - snRNA gene predicted gene, 23788
Gm26974 7 123958955 to 123968767 9812 - unclassified non-coding RNA gene predicted gene, 26974
Gm27040 7 123971046 to 123983454 12408 - antisense lncRNA gene predicted gene, 27040
Cpgi19678 7 123982039 to 123984126 2087 CpG island CpG island 19678
Tssr68957 7 123982799 to 123982863 64 + TSS region transcription start site region 68957
Hs3st4 7 123983181 to 124398989 415808 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 4
Tssr68958 7 123993256 to 123993271 15 + TSS region transcription start site region 68958
Tssr68959 7 123993334 to 123993348 14 + TSS region transcription start site region 68959
Tssr68960 7 124018148 to 124018154 6 + TSS region transcription start site region 68960
D7Mit102 7 124037402 to 124037658 256 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 102
Tssr68961 7 124089411 to 124089417 6 + TSS region transcription start site region 68961
Tssr68962 7 124140521 to 124140525 4 + TSS region transcription start site region 68962
Gm25759 7 124146281 to 124146409 128 + snoRNA gene predicted gene, 25759
Tssr74589 7 124186593 to 124186605 12 - TSS region transcription start site region 74589
Gm15338 7 124186718 to 124290270 103552 + sense intronic lncRNA gene predicted gene 15338
Tssr68963 7 124186733 to 124186739 6 + TSS region transcription start site region 68963
Gm15339 7 124476541 to 124494301 17760 - lincRNA gene predicted gene 15339
Gm23168 7 124492906 to 124493048 142 + snoRNA gene predicted gene, 23168
3100003L05Rik 7 124625670 to 124708935 83265 - lincRNA gene RIKEN cDNA 3100003L05 gene
Tssr74590 7 124629121 to 124629125 4 - TSS region transcription start site region 74590
Tssr74591 7 124655285 to 124655322 37 - TSS region transcription start site region 74591
Gm19008 7 124699384 to 124700075 691 - pseudogene predicted gene, 19008
D7Csu1 7 124764585 to 124764980 395 DNA segment DNA segment, Chr 7, Central Connecticut State University 1
D7Csu2 7 124764961 to 124765251 290 DNA segment DNA segment, Chr 7, Central Connecticut State University 2
Gm45092 7 124907609 to 124914418 6809 + lincRNA gene predicted gene 45092
D7Mit255 7 124914439 to 124914573 134 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 255
Il4ppq 7 124914439 to 129217600 4303161 QTL IL-4 producing potential QTL
Gm45093 7 125067029 to 125069491 2462 - unclassified gene predicted gene 45093
Glud-ps 7 125075351 to 125076007 656 + pseudogene glutamate dehydrogenase, pseudogene
D7Mit205 7 125127452 to 125127570 118 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 205
Tssr68964 7 125182530 to 125182549 19 + TSS region transcription start site region 68964
Gm30501 7 125210421 to 125216918 6497 + lncRNA gene predicted gene, 30501
Gm21957 7 125219449 to 125219886 437 - pseudogene predicted gene, 21957
Gm46000 7 125316661 to 125323685 7024 - lncRNA gene predicted gene, 46000
Tssr68965 7 125318334 to 125318343 9 + TSS region transcription start site region 68965
4930533L02Rik 7 125318359 to 125319518 1159 + unclassified non-coding RNA gene RIKEN cDNA 4930533L02 gene
4933440M02Rik 7 125331782 to 125349786 18004 - lincRNA gene RIKEN cDNA 4933440M02 gene
Gm39085 7 125333122 to 125333681 559 + lncRNA gene predicted gene, 39085
D7Mit68 7 125341551 to 125341734 183 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 68
Tssr74592 7 125349745 to 125349783 38 - TSS region transcription start site region 74592
Tssr74593 7 125349784 to 125349814 30 - TSS region transcription start site region 74593
Tssr68966 7 125349863 to 125349877 14 + TSS region transcription start site region 68966
4930571K23Rik 7 125368861 to 125371013 2152 + lincRNA gene RIKEN cDNA 4930571K23 gene
Tssr68967 7 125368950 to 125368961 11 + TSS region transcription start site region 68967
Tssr68968 7 125368972 to 125368983 11 + TSS region transcription start site region 68968
Tssr68969 7 125368986 to 125369003 17 + TSS region transcription start site region 68969
Cpgi19679 7 125393328 to 125394029 701 CpG island CpG island 19679
Gm30560 7 125397981 to 125405814 7833 + lncRNA gene predicted gene, 30560
Gm30717 7 125416994 to 125418114 1120 - lincRNA gene predicted gene, 30717
Tssr68970 7 125418700 to 125418726 26 + TSS region transcription start site region 68970
Cpgi19680 7 125444527 to 125445349 822 CpG island CpG island 19680
Tssr68971 7 125444635 to 125444709 74 + TSS region transcription start site region 68971
Kdm8 7 125444676 to 125462269 17593 + protein coding gene lysine (K)-specific demethylase 8
Nsmce1 7 125467640 to 125491575 23935 - protein coding gene NSE1 homolog, SMC5-SMC6 complex component
Tssr68972 7 125487410 to 125487425 15 + TSS region transcription start site region 68972
Tssr68973 7 125487660 to 125487665 5 + TSS region transcription start site region 68973
Tssr74594 7 125488742 to 125488753 11 - TSS region transcription start site region 74594
Tssr68974 7 125489005 to 125489010 5 + TSS region transcription start site region 68974
Cpgi19681 7 125491068 to 125491961 893 CpG island CpG island 19681
Tssr68975 7 125491112 to 125491130 18 + TSS region transcription start site region 68975
Tssr74595 7 125491371 to 125491383 12 - TSS region transcription start site region 74595
Tssr74596 7 125491397 to 125491413 16 - TSS region transcription start site region 74596
Tssr74597 7 125491414 to 125491458 44 - TSS region transcription start site region 74597
Tssr74598 7 125491475 to 125491486 11 - TSS region transcription start site region 74598
Tssr74599 7 125491506 to 125491520 14 - TSS region transcription start site region 74599
Tssr74600 7 125491524 to 125491539 15 - TSS region transcription start site region 74600
Tssr68976 7 125491528 to 125491565 37 + TSS region transcription start site region 68976
4921524M04Rik 7 125491554 to 125493057 1503 unclassified gene RIKEN cDNA 4921524M04 gene
Tssr74601 7 125491586 to 125491595 9 - TSS region transcription start site region 74601
Tssr74602 7 125492400 to 125492406 6 - TSS region transcription start site region 74602
Tssr74603 7 125492543 to 125492590 47 - TSS region transcription start site region 74603
D7Ertd495e 7 125497236 to 125497460 224 DNA segment DNA segment, Chr 7, ERATO Doi 495, expressed
D7Mit206 7 125542030 to 125542177 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 206
Gm4973 7 125547269 to 125548599 1330 + pseudogene predicted gene 4973
Tssr68977 7 125548371 to 125548398 27 + TSS region transcription start site region 68977
A430106F20Rik 7 125551772 to 125552062 290 unclassified gene RIKEN cDNA A430106F20 gene
Cpgi19682 7 125552009 to 125552544 535 CpG island CpG island 19682
Tssr74604 7 125552055 to 125552065 10 - TSS region transcription start site region 74604
Tssr74605 7 125552133 to 125552176 43 - TSS region transcription start site region 74605
Tssr68978 7 125552235 to 125552257 22 + TSS region transcription start site region 68978
Tssr68979 7 125552260 to 125552306 46 + TSS region transcription start site region 68979
Il4ra 7 125552282 to 125579474 27192 + protein coding gene interleukin 4 receptor, alpha
Tssr68980 7 125552308 to 125552311 3 + TSS region transcription start site region 68980
Tssr68981 7 125552313 to 125552323 10 + TSS region transcription start site region 68981
Gm44876 7 125570776 to 125572117 1341 - antisense lncRNA gene predicted gene 44876
Cpgi19683 7 125581057 to 125581608 551 CpG island CpG island 19683
Tssr68982 7 125581428 to 125581450 22 + TSS region transcription start site region 68982
Tssr68983 7 125594134 to 125594147 13 + TSS region transcription start site region 68983
Tssr68984 7 125603420 to 125603437 17 + TSS region transcription start site region 68984
Il21r 7 125603429 to 125633570 30141 + protein coding gene interleukin 21 receptor
Tssr68985 7 125603443 to 125603474 31 + TSS region transcription start site region 68985
Tssr68986 7 125603481 to 125603496 15 + TSS region transcription start site region 68986
Tssr68987 7 125603587 to 125603600 13 + TSS region transcription start site region 68987
Tssr68988 7 125603616 to 125603625 9 + TSS region transcription start site region 68988
Tssr68989 7 125603640 to 125603651 11 + TSS region transcription start site region 68989
Tssr74606 7 125605809 to 125605835 26 - TSS region transcription start site region 74606
Tssr68990 7 125607626 to 125607669 43 + TSS region transcription start site region 68990
Tssr68991 7 125630613 to 125630627 14 + TSS region transcription start site region 68991
Tssr68992 7 125630646 to 125630660 14 + TSS region transcription start site region 68992
D7Mit101 7 125633039 to 125633127 88 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 101
Tssr68993 7 125634396 to 125634410 14 + TSS region transcription start site region 68993
Tssr74607 7 125636519 to 125636523 4 - TSS region transcription start site region 74607
Gtf3c1 7 125640954 to 125707688 66734 - protein coding gene general transcription factor III C 1
Cpgi19684 7 125707031 to 125708339 1308 CpG island CpG island 19684
Tssr74608 7 125707679 to 125707718 39 - TSS region transcription start site region 74608
Tssr74609 7 125707735 to 125707747 12 - TSS region transcription start site region 74609
Tssr74610 7 125707771 to 125707785 14 - TSS region transcription start site region 74610
D430042O09Rik 7 125707888 to 125874793 166905 + protein coding gene RIKEN cDNA D430042O09 gene
Tssr68994 7 125707893 to 125707929 36 + TSS region transcription start site region 68994
Tssr68995 7 125707945 to 125707958 13 + TSS region transcription start site region 68995
A930012M21Rik 7 125710836 to 125713308 2472 unclassified gene RIKEN cDNA A930012M21 gene
D7Mit286 7 125719677 to 125719847 170 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 286
D7Ertd523e 7 125735725 to 125735974 249 DNA segment DNA segment, Chr 7, ERATO Doi 523, expressed
Tssr68996 7 125753728 to 125753738 10 + TSS region transcription start site region 68996
Tssr68997 7 125829529 to 125829548 19 + TSS region transcription start site region 68997
Tssr68998 7 125829653 to 125829668 15 + TSS region transcription start site region 68998
Tssr68999 7 125872677 to 125872720 43 + TSS region transcription start site region 68999
Gsg1l 7 125878420 to 126082411 203991 - protein coding gene GSG1-like
D7Sri317 7 125920909 to 125921017 108 DNA segment DNA segment, Chr 7, The Scripps Research Institute 317
Lgth10 7 126000000 to 52000000 -74000000 QTL body length 10
Cpgi19685 7 126041159 to 126041341 182 CpG island CpG island 19685
Gm44874 7 126062906 to 126064447 1541 - unclassified gene predicted gene 44874
Cpgi19686 7 126081275 to 126083033 1758 CpG island CpG island 19686
Tssr74611 7 126082083 to 126082098 15 - TSS region transcription start site region 74611
Tssr74612 7 126082378 to 126082392 14 - TSS region transcription start site region 74612
Tssr74613 7 126082406 to 126082428 22 - TSS region transcription start site region 74613
Tssr74614 7 126082474 to 126082485 11 - TSS region transcription start site region 74614
Gm30807 7 126091952 to 126094714 2762 - lncRNA gene predicted gene, 30807
Xpo6 7 126101715 to 126200501 98786 - protein coding gene exportin 6
Tssr74615 7 126108504 to 126108524 20 - TSS region transcription start site region 74615
Tssr74616 7 126112021 to 126112025 4 - TSS region transcription start site region 74616
Tssr74617 7 126160992 to 126161013 21 - TSS region transcription start site region 74617
Gm17137 7 126165647 to 126166613 966 + pseudogene predicted gene 17137
Gm17136 7 126176124 to 126176534 410 + pseudogene predicted gene 17136
Tssr74618 7 126181615 to 126181632 17 - TSS region transcription start site region 74618
Tssr74619 7 126197996 to 126198008 12 - TSS region transcription start site region 74619
Cpgi19687 7 126199692 to 126200683 991 CpG island CpG island 19687
Tssr74620 7 126200119 to 126200168 49 - TSS region transcription start site region 74620
Tssr74621 7 126200305 to 126200313 8 - TSS region transcription start site region 74621
Tssr74622 7 126200329 to 126200335 6 - TSS region transcription start site region 74622
Tssr74623 7 126200345 to 126200354 9 - TSS region transcription start site region 74623
Tssr74624 7 126200357 to 126200366 9 - TSS region transcription start site region 74624
Tssr74625 7 126200397 to 126200408 11 - TSS region transcription start site region 74625
Tssr74626 7 126200415 to 126200468 53 - TSS region transcription start site region 74626
Tssr74627 7 126200474 to 126200500 26 - TSS region transcription start site region 74627
Tssr74628 7 126200509 to 126200525 16 - TSS region transcription start site region 74628
Gm19138 7 126214885 to 126215556 671 - pseudogene predicted gene, 19138
1700123J17Rik 7 126224247 to 126248238 23991 - lincRNA gene RIKEN cDNA 1700123J17 gene
Gm44703 7 126242380 to 126242627 247 - pseudogene predicted gene 44703
Tssr69000 7 126248342 to 126248358 16 + TSS region transcription start site region 69000
Tssr69001 7 126248364 to 126248375 11 + TSS region transcription start site region 69001
Cpgi19688 7 126248700 to 126248873 173 CpG island CpG island 19688
Cpgi19689 7 126271717 to 126273324 1607 CpG island CpG island 19689
Tssr69002 7 126272413 to 126272424 11 + TSS region transcription start site region 69002
Tssr69003 7 126272428 to 126272443 15 + TSS region transcription start site region 69003
Tssr69004 7 126272444 to 126272455 11 + TSS region transcription start site region 69004
Tssr69005 7 126272463 to 126272474 11 + TSS region transcription start site region 69005
Tssr69006 7 126272475 to 126272492 17 + TSS region transcription start site region 69006
Tssr69007 7 126272506 to 126272524 18 + TSS region transcription start site region 69007
Tssr69008 7 126272526 to 126272587 61 + TSS region transcription start site region 69008
Tssr69009 7 126272589 to 126272609 20 + TSS region transcription start site region 69009
Sbk1 7 126272619 to 126295016 22397 + protein coding gene SH3-binding kinase 1
Tssr69010 7 126272784 to 126272795 11 + TSS region transcription start site region 69010
Tssr69011 7 126272847 to 126272858 11 + TSS region transcription start site region 69011
Tssr74629 7 126285407 to 126285418 11 - TSS region transcription start site region 74629
Cpgi19690 7 126291675 to 126292733 1058 CpG island CpG island 19690
Tssr69012 7 126292473 to 126292488 15 + TSS region transcription start site region 69012
Tssr69013 7 126293407 to 126293413 6 + TSS region transcription start site region 69013
Tssr69014 7 126293817 to 126293831 14 + TSS region transcription start site region 69014
Tssr69015 7 126293991 to 126294001 10 + TSS region transcription start site region 69015
Gm10155 7 126299434 to 126299916 482 - pseudogene predicted gene 10155
Tssr69016 7 126323953 to 126323992 39 + TSS region transcription start site region 69016
Tssr74630 7 126324918 to 126324932 14 - TSS region transcription start site region 74630
D7Csu4 7 126324922 to 126325409 487 DNA segment DNA segment, Chr 7, Central Connecticut State University 4
D7Csu3 7 126325352 to 126325792 440 DNA segment DNA segment, Chr 7, Central Connecticut State University 3
Tssr74631 7 126327207 to 126327232 25 - TSS region transcription start site region 74631
Gm30928 7 126348372 to 126351619 3247 - lincRNA gene predicted gene, 30928
Tssr74632 7 126351549 to 126351560 11 - TSS region transcription start site region 74632
Tssr74633 7 126351566 to 126351575 9 - TSS region transcription start site region 74633
Tssr74634 7 126351596 to 126351611 15 - TSS region transcription start site region 74634
Tssr69017 7 126353555 to 126353557 2 + TSS region transcription start site region 69017
Tssr74635 7 126355952 to 126355971 19 - TSS region transcription start site region 74635
Lat 7 126363824 to 126369570 5746 - protein coding gene linker for activation of T cells
Tssr74636 7 126364844 to 126364850 6 - TSS region transcription start site region 74636
Tssr74637 7 126364875 to 126364880 5 - TSS region transcription start site region 74637
Tssr74638 7 126364894 to 126364905 11 - TSS region transcription start site region 74638
Tssr74639 7 126364909 to 126364922 13 - TSS region transcription start site region 74639
Tssr74640 7 126364929 to 126364951 22 - TSS region transcription start site region 74640
Tssr69018 7 126367885 to 126367925 40 + TSS region transcription start site region 69018
Mir7058 7 126367971 to 126368045 74 - miRNA gene microRNA 7058