Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:123457906-125528048

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr68953 7 123462274 to 123462296 22 + TSS region transcription start site region 68953
Aqp8 7 123462294 to 123468003 5709 + protein coding gene aquaporin 8
Tssr68954 7 123462318 to 123462329 11 + TSS region transcription start site region 68954
Tssr68955 7 123462350 to 123462368 18 + TSS region transcription start site region 68955
Zkscan2 7 123475384 to 123500449 25065 - protein coding gene zinc finger with KRAB and SCAN domains 2
Cpgi19677 7 123499978 to 123501091 1113 CpG island CpG island 19677
Tssr74587 7 123500100 to 123500115 15 - TSS region transcription start site region 74587
Tssr74588 7 123500503 to 123500578 75 - TSS region transcription start site region 74588
Tssr2393 7 123543491 to 123543495 4 + TSS region transcription start site region 2393
Gm30335 7 123592022 to 123639762 47740 + lncRNA gene predicted gene, 30335
Tssr68956 7 123819945 to 123819947 2 + TSS region transcription start site region 68956
Gm23788 7 123942104 to 123942209 105 - snRNA gene predicted gene, 23788
Gm26974 7 123958955 to 123968767 9812 - unclassified non-coding RNA gene predicted gene, 26974
Gm27040 7 123971046 to 123983454 12408 - antisense lncRNA gene predicted gene, 27040
Cpgi19678 7 123982039 to 123984126 2087 CpG island CpG island 19678
Tssr68957 7 123982799 to 123982863 64 + TSS region transcription start site region 68957
Hs3st4 7 123983181 to 124398989 415808 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 4
Tssr68958 7 123993256 to 123993271 15 + TSS region transcription start site region 68958
Tssr68959 7 123993334 to 123993348 14 + TSS region transcription start site region 68959
Tssr68960 7 124018148 to 124018154 6 + TSS region transcription start site region 68960
D7Mit102 7 124037402 to 124037658 256 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 102
Tssr68961 7 124089411 to 124089417 6 + TSS region transcription start site region 68961
Tssr68962 7 124140521 to 124140525 4 + TSS region transcription start site region 68962
Gm25759 7 124146281 to 124146409 128 + snoRNA gene predicted gene, 25759
Tssr74589 7 124186593 to 124186605 12 - TSS region transcription start site region 74589
Gm15338 7 124186718 to 124290270 103552 + sense intronic lncRNA gene predicted gene 15338
Tssr68963 7 124186733 to 124186739 6 + TSS region transcription start site region 68963
Gm15339 7 124476541 to 124494301 17760 - lincRNA gene predicted gene 15339
Gm23168 7 124492906 to 124493048 142 + snoRNA gene predicted gene, 23168
3100003L05Rik 7 124625670 to 124708935 83265 - lincRNA gene RIKEN cDNA 3100003L05 gene
Tssr74590 7 124629121 to 124629125 4 - TSS region transcription start site region 74590
Tssr74591 7 124655285 to 124655322 37 - TSS region transcription start site region 74591
Gm19008 7 124699384 to 124700075 691 - pseudogene predicted gene, 19008
D7Csu1 7 124764585 to 124764980 395 DNA segment DNA segment, Chr 7, Central Connecticut State University 1
D7Csu2 7 124764961 to 124765251 290 DNA segment DNA segment, Chr 7, Central Connecticut State University 2
Gm45092 7 124907609 to 124914418 6809 + lincRNA gene predicted gene 45092
D7Mit255 7 124914439 to 124914573 134 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 255
Il4ppq 7 124914439 to 129217600 4303161 QTL IL-4 producing potential QTL
Gm45093 7 125067029 to 125069491 2462 - unclassified gene predicted gene 45093
Glud-ps 7 125075351 to 125076007 656 + pseudogene glutamate dehydrogenase, pseudogene
D7Mit205 7 125127452 to 125127570 118 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 205
Tssr68964 7 125182530 to 125182549 19 + TSS region transcription start site region 68964
Gm30501 7 125210421 to 125216918 6497 + lncRNA gene predicted gene, 30501
Gm21957 7 125219449 to 125219886 437 - pseudogene predicted gene, 21957
Gm46000 7 125316661 to 125323685 7024 - lncRNA gene predicted gene, 46000
Tssr68965 7 125318334 to 125318343 9 + TSS region transcription start site region 68965
4930533L02Rik 7 125318359 to 125319518 1159 + unclassified non-coding RNA gene RIKEN cDNA 4930533L02 gene
4933440M02Rik 7 125331782 to 125349786 18004 - lincRNA gene RIKEN cDNA 4933440M02 gene
Gm39085 7 125333122 to 125333681 559 + lncRNA gene predicted gene, 39085
D7Mit68 7 125341551 to 125341734 183 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 68
Tssr74592 7 125349745 to 125349783 38 - TSS region transcription start site region 74592
Tssr74593 7 125349784 to 125349814 30 - TSS region transcription start site region 74593
Tssr68966 7 125349863 to 125349877 14 + TSS region transcription start site region 68966
4930571K23Rik 7 125368861 to 125371013 2152 + lincRNA gene RIKEN cDNA 4930571K23 gene
Tssr68967 7 125368950 to 125368961 11 + TSS region transcription start site region 68967
Tssr68968 7 125368972 to 125368983 11 + TSS region transcription start site region 68968
Tssr68969 7 125368986 to 125369003 17 + TSS region transcription start site region 68969
Cpgi19679 7 125393328 to 125394029 701 CpG island CpG island 19679
Gm30560 7 125397981 to 125405814 7833 + lncRNA gene predicted gene, 30560
Gm30717 7 125416994 to 125418114 1120 - lincRNA gene predicted gene, 30717
Tssr68970 7 125418700 to 125418726 26 + TSS region transcription start site region 68970
Cpgi19680 7 125444527 to 125445349 822 CpG island CpG island 19680
Tssr68971 7 125444635 to 125444709 74 + TSS region transcription start site region 68971
Kdm8 7 125444676 to 125462269 17593 + protein coding gene lysine (K)-specific demethylase 8
Nsmce1 7 125467640 to 125491575 23935 - protein coding gene NSE1 homolog, SMC5-SMC6 complex component
Tssr68972 7 125487410 to 125487425 15 + TSS region transcription start site region 68972
Tssr68973 7 125487660 to 125487665 5 + TSS region transcription start site region 68973
Tssr74594 7 125488742 to 125488753 11 - TSS region transcription start site region 74594
Tssr68974 7 125489005 to 125489010 5 + TSS region transcription start site region 68974
Cpgi19681 7 125491068 to 125491961 893 CpG island CpG island 19681
Tssr68975 7 125491112 to 125491130 18 + TSS region transcription start site region 68975
Tssr74595 7 125491371 to 125491383 12 - TSS region transcription start site region 74595
Tssr74596 7 125491397 to 125491413 16 - TSS region transcription start site region 74596
Tssr74597 7 125491414 to 125491458 44 - TSS region transcription start site region 74597
Tssr74598 7 125491475 to 125491486 11 - TSS region transcription start site region 74598
Tssr74599 7 125491506 to 125491520 14 - TSS region transcription start site region 74599
Tssr74600 7 125491524 to 125491539 15 - TSS region transcription start site region 74600
Tssr68976 7 125491528 to 125491565 37 + TSS region transcription start site region 68976
4921524M04Rik 7 125491554 to 125493057 1503 unclassified gene RIKEN cDNA 4921524M04 gene
Tssr74601 7 125491586 to 125491595 9 - TSS region transcription start site region 74601
Tssr74602 7 125492400 to 125492406 6 - TSS region transcription start site region 74602
Tssr74603 7 125492543 to 125492590 47 - TSS region transcription start site region 74603
D7Ertd495e 7 125497236 to 125497460 224 DNA segment DNA segment, Chr 7, ERATO Doi 495, expressed