Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:123422869-124958989

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lcmt1 7 123377982 to 123430358 52376 + protein coding gene leucine carboxyl methyltransferase 1
D7Mit164 7 123435509 to 123435813 304 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 164
D7Mit41 7 123436140 to 123436252 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 41
Tssr68953 7 123462274 to 123462296 22 + TSS region transcription start site region 68953
Aqp8 7 123462294 to 123468003 5709 + protein coding gene aquaporin 8
Tssr68954 7 123462318 to 123462329 11 + TSS region transcription start site region 68954
Tssr68955 7 123462350 to 123462368 18 + TSS region transcription start site region 68955
Zkscan2 7 123475384 to 123500449 25065 - protein coding gene zinc finger with KRAB and SCAN domains 2
Cpgi19677 7 123499978 to 123501091 1113 CpG island CpG island 19677
Tssr74587 7 123500100 to 123500115 15 - TSS region transcription start site region 74587
Tssr74588 7 123500503 to 123500578 75 - TSS region transcription start site region 74588
Tssr2393 7 123543491 to 123543495 4 + TSS region transcription start site region 2393
Gm30335 7 123592022 to 123639762 47740 + lncRNA gene predicted gene, 30335
Tssr68956 7 123819945 to 123819947 2 + TSS region transcription start site region 68956
Gm23788 7 123942104 to 123942209 105 - snRNA gene predicted gene, 23788
Gm26974 7 123958955 to 123968767 9812 - unclassified non-coding RNA gene predicted gene, 26974
Gm27040 7 123971046 to 123983454 12408 - antisense lncRNA gene predicted gene, 27040
Cpgi19678 7 123982039 to 123984126 2087 CpG island CpG island 19678
Tssr68957 7 123982799 to 123982863 64 + TSS region transcription start site region 68957
Hs3st4 7 123983181 to 124398989 415808 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 4
Tssr68958 7 123993256 to 123993271 15 + TSS region transcription start site region 68958
Tssr68959 7 123993334 to 123993348 14 + TSS region transcription start site region 68959
Tssr68960 7 124018148 to 124018154 6 + TSS region transcription start site region 68960
D7Mit102 7 124037402 to 124037658 256 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 102
Tssr68961 7 124089411 to 124089417 6 + TSS region transcription start site region 68961
Tssr68962 7 124140521 to 124140525 4 + TSS region transcription start site region 68962
Gm25759 7 124146281 to 124146409 128 + snoRNA gene predicted gene, 25759
Tssr74589 7 124186593 to 124186605 12 - TSS region transcription start site region 74589
Gm15338 7 124186718 to 124290270 103552 + sense intronic lncRNA gene predicted gene 15338
Tssr68963 7 124186733 to 124186739 6 + TSS region transcription start site region 68963
Gm15339 7 124476541 to 124494301 17760 - lincRNA gene predicted gene 15339
Gm23168 7 124492906 to 124493048 142 + snoRNA gene predicted gene, 23168
3100003L05Rik 7 124625670 to 124708935 83265 - lincRNA gene RIKEN cDNA 3100003L05 gene
Tssr74590 7 124629121 to 124629125 4 - TSS region transcription start site region 74590
Tssr74591 7 124655285 to 124655322 37 - TSS region transcription start site region 74591
Gm19008 7 124699384 to 124700075 691 - pseudogene predicted gene, 19008
D7Csu1 7 124764585 to 124764980 395 DNA segment DNA segment, Chr 7, Central Connecticut State University 1
D7Csu2 7 124764961 to 124765251 290 DNA segment DNA segment, Chr 7, Central Connecticut State University 2
Gm45092 7 124907609 to 124914418 6809 + lincRNA gene predicted gene 45092
D7Mit255 7 124914439 to 124914573 134 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 255
Il4ppq 7 124914439 to 129217600 4303161 QTL IL-4 producing potential QTL