Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:121077138-122817142

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mettl9 7 121034445 to 121078329 43884 + protein coding gene methyltransferase like 9
Tssr68833 7 121083403 to 121083404 1 + TSS region transcription start site region 68833
Tssr68834 7 121083414 to 121083434 20 + TSS region transcription start site region 68834
Otoa 7 121083438 to 121163093 79655 + protein coding gene otoancorin
Tssr68835 7 121089936 to 121089939 3 + TSS region transcription start site region 68835
Tssr68836 7 121089940 to 121089943 3 + TSS region transcription start site region 68836
Gm9240 7 121223253 to 121223994 741 - pseudogene predicted gene 9240
Cpgi19655 7 121245535 to 121246246 711 CpG island CpG island 19655
Gm45079 7 121257359 to 121295852 38493 + lincRNA gene predicted gene 45079
4930486N12Rik 7 121258764 to 121259395 631 - unclassified gene RIKEN cDNA 4930486N12 gene
Gm36736 7 121312974 to 121337213 24239 - antisense lncRNA gene predicted gene, 36736
D7Mit254 7 121324091 to 121324214 123 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 254
Cpgi19656 7 121391576 to 121393343 1767 CpG island CpG island 19656
Hs3st2 7 121391859 to 121501770 109911 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 2
Tssr68837 7 121392266 to 121392286 20 + TSS region transcription start site region 68837
Gm39081 7 121479952 to 121540236 60284 - lncRNA gene predicted gene, 39081
D7Mit204 7 121483802 to 121483933 131 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 204
Tssr74552 7 121517184 to 121517188 4 - TSS region transcription start site region 74552
Tssr74553 7 121520616 to 121520619 3 - TSS region transcription start site region 74553
Cpgi19657 7 121539517 to 121539729 212 CpG island CpG island 19657
4933432K03Rik 7 121587386 to 121589836 2450 - antisense lncRNA gene RIKEN cDNA 4933432K03 gene
Tssr2389 7 121589409 to 121589427 18 - TSS region transcription start site region 2389
Tssr2390 7 121589803 to 121589812 9 - TSS region transcription start site region 2390
Tssr74554 7 121589823 to 121589850 27 - TSS region transcription start site region 74554
Tssr74555 7 121589851 to 121589853 2 - TSS region transcription start site region 74555
Tssr74556 7 121589854 to 121589863 9 - TSS region transcription start site region 74556
1700025J12Rik 7 121589903 to 121591591 1688 + lincRNA gene RIKEN cDNA 1700025J12 gene
Usp31 7 121642021 to 121707253 65232 - protein coding gene ubiquitin specific peptidase 31
D7Mit283 7 121684447 to 121684559 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 283
Cpgi19658 7 121706362 to 121707868 1506 CpG island CpG island 19658
1700069B07Rik 7 121707075 to 121708013 938 + antisense lncRNA gene RIKEN cDNA 1700069B07 gene
Tssr74557 7 121707384 to 121707460 76 - TSS region transcription start site region 74557
Tssr74558 7 121707463 to 121707472 9 - TSS region transcription start site region 74558
Cpgi19659 7 121734162 to 121735112 950 CpG island CpG island 19659
Tssr68838 7 121734425 to 121734440 15 + TSS region transcription start site region 68838
Tssr68839 7 121734449 to 121734473 24 + TSS region transcription start site region 68839
Tssr68840 7 121734477 to 121734489 12 + TSS region transcription start site region 68840
Scnn1g 7 121734479 to 121768475 33996 + protein coding gene sodium channel, nonvoltage-gated 1 gamma
Tssr68841 7 121734495 to 121734508 13 + TSS region transcription start site region 68841
Cpgi19660 7 121737964 to 121738374 410 CpG island CpG island 19660
Tssr68842 7 121739401 to 121739405 4 + TSS region transcription start site region 68842
Gm36848 7 121768449 to 121777845 9396 - lncRNA gene predicted gene, 36848
Gm44740 7 121837452 to 121839065 1613 - unclassified gene predicted gene 44740
Tssr74559 7 121841078 to 121841081 3 - TSS region transcription start site region 74559
Cpgi19661 7 121864901 to 121865483 582 CpG island CpG island 19661
Tssr68843 7 121865031 to 121865043 12 + TSS region transcription start site region 68843
Scnn1b 7 121865038 to 121918514 53476 + protein coding gene sodium channel, nonvoltage-gated 1 beta
Tssr68844 7 121865051 to 121865065 14 + TSS region transcription start site region 68844
Tssr68845 7 121865070 to 121865093 23 + TSS region transcription start site region 68845
Tssr68846 7 121898337 to 121898359 22 + TSS region transcription start site region 68846
Tssr68847 7 121905620 to 121905632 12 + TSS region transcription start site region 68847
Tssr68848 7 121905648 to 121905662 14 + TSS region transcription start site region 68848
Tssr2391 7 121914148 to 121914157 9 + TSS region transcription start site region 2391
Tssr68849 7 121914210 to 121914230 20 + TSS region transcription start site region 68849
Tssr68850 7 121914297 to 121914303 6 + TSS region transcription start site region 68850
Cog7 7 121922836 to 121981706 58870 - protein coding gene component of oligomeric golgi complex 7
Tssr74560 7 121946280 to 121946326 46 - TSS region transcription start site region 74560
Tssr74561 7 121946356 to 121946369 13 - TSS region transcription start site region 74561
Tssr74562 7 121947138 to 121947142 4 - TSS region transcription start site region 74562
Cpgi19662 7 121981048 to 121981957 909 CpG island CpG island 19662
Tssr74563 7 121981567 to 121981577 10 - TSS region transcription start site region 74563
Tssr74564 7 121981669 to 121981706 37 - TSS region transcription start site region 74564
Tssr74565 7 121981707 to 121981719 12 - TSS region transcription start site region 74565
Tssr68851 7 121981736 to 121981771 35 + TSS region transcription start site region 68851
Gm44987 7 121981761 to 121989116 7355 + antisense lncRNA gene predicted gene 44987
Gga2 7 121986722 to 122021198 34476 - protein coding gene golgi associated, gamma adaptin ear containing, ARF binding protein 2
Tssr74566 7 121993397 to 121993400 3 - TSS region transcription start site region 74566
Tssr68852 7 122014576 to 122014579 3 + TSS region transcription start site region 68852
Cpgi19663 7 122020707 to 122021287 580 CpG island CpG island 19663
Tssr74567 7 122021143 to 122021206 63 - TSS region transcription start site region 74567
Ears2 7 122037213 to 122067263 30050 - protein coding gene glutamyl-tRNA synthetase 2, mitochondrial
Tssr74568 7 122046901 to 122046911 10 - TSS region transcription start site region 74568
Tssr74569 7 122046914 to 122046933 19 - TSS region transcription start site region 74569
Cpgi19664 7 122066658 to 122068119 1461 CpG island CpG island 19664
Tssr74570 7 122067039 to 122067080 41 - TSS region transcription start site region 74570
Tssr68853 7 122067164 to 122067216 52 + TSS region transcription start site region 68853
Ubfd1 7 122067183 to 122082199 15016 + protein coding gene ubiquitin family domain containing 1
Tssr68854 7 122067343 to 122067374 31 + TSS region transcription start site region 68854
Tssr68855 7 122067392 to 122067460 68 + TSS region transcription start site region 68855
Tssr68856 7 122078995 to 122079012 17 + TSS region transcription start site region 68856
Tssr68857 7 122079769 to 122079773 4 + TSS region transcription start site region 68857
Tssr68858 7 122080006 to 122080025 19 + TSS region transcription start site region 68858
Ndufab1 7 122088044 to 122101876 13832 - protein coding gene NADH:ubiquinone oxidoreductase subunit AB1
Gm44986 7 122096083 to 122098911 2828 + unclassified gene predicted gene 44986
Cpgi19665 7 122101465 to 122102161 696 CpG island CpG island 19665
Tssr74571 7 122101827 to 122101859 32 - TSS region transcription start site region 74571
Palb2 7 122107262 to 122132980 25718 - protein coding gene partner and localizer of BRCA2
Tssr68859 7 122131053 to 122131065 12 + TSS region transcription start site region 68859
Gm16326 7 122131092 to 122131505 413 + pseudogene predicted gene 16326
Cpgi19666 7 122132490 to 122133439 949 CpG island CpG island 19666
Tssr68860 7 122132575 to 122132580 5 + TSS region transcription start site region 68860
Tssr74572 7 122132863 to 122132943 80 - TSS region transcription start site region 74572
Tssr68861 7 122133036 to 122133050 14 + TSS region transcription start site region 68861
Dctn5 7 122133041 to 122149044 16003 + protein coding gene dynactin 5
Tssr68862 7 122133052 to 122133090 38 + TSS region transcription start site region 68862
Gm15489 7 122139008 to 122159401 20393 - antisense lncRNA gene predicted gene 15489
Tssr68863 7 122148287 to 122148296 9 + TSS region transcription start site region 68863
Cpgi19667 7 122158911 to 122159972 1061 CpG island CpG island 19667
Tssr68864 7 122159422 to 122159501 79 + TSS region transcription start site region 68864
Plk1 7 122159439 to 122169873 10434 + protein coding gene polo like kinase 1
Tssr68865 7 122162405 to 122162447 42 + TSS region transcription start site region 68865
Tssr68866 7 122164067 to 122164086 19 + TSS region transcription start site region 68866
Gm44985 7 122167029 to 122168044 1015 - unclassified gene predicted gene 44985
Ern2 7 122169893 to 122186207 16314 - protein coding gene endoplasmic reticulum (ER) to nucleus signalling 2
Tssr74573 7 122186151 to 122186213 62 - TSS region transcription start site region 74573
Tssr74574 7 122186224 to 122186231 7 - TSS region transcription start site region 74574
Tssr68867 7 122208624 to 122208648 24 + TSS region transcription start site region 68867
Tssr68868 7 122219407 to 122219416 9 + TSS region transcription start site region 68868
Tssr68869 7 122219469 to 122219504 35 + TSS region transcription start site region 68869
Chp2 7 122219496 to 122222824 3328 + protein coding gene calcineurin-like EF hand protein 2
Cpgi19668 7 122219624 to 122219836 212 CpG island CpG island 19668
Tssr68870 7 122219631 to 122219638 7 + TSS region transcription start site region 68870
Tssr68871 7 122219648 to 122219649 1 + TSS region transcription start site region 68871
Tssr68872 7 122219650 to 122219673 23 + TSS region transcription start site region 68872
Tssr68873 7 122219675 to 122219688 13 + TSS region transcription start site region 68873
Tssr68874 7 122219697 to 122219704 7 + TSS region transcription start site region 68874
Gm29903 7 122235265 to 122244231 8966 - lncRNA gene predicted gene, 29903
Gm29977 7 122249302 to 122250025 723 - pseudogene predicted gene, 29977
Gm23614 7 122265094 to 122265200 106 + snRNA gene predicted gene, 23614
Gm30059 7 122267465 to 122273871 6406 + lncRNA gene predicted gene, 30059
Cpgi19669 7 122288612 to 122289970 1358 CpG island CpG island 19669
Tssr68875 7 122288700 to 122288721 21 + TSS region transcription start site region 68875
Tssr68876 7 122288722 to 122288734 12 + TSS region transcription start site region 68876
Tssr68877 7 122288745 to 122288755 10 + TSS region transcription start site region 68877
Tssr68878 7 122289076 to 122289225 149 + TSS region transcription start site region 68878
Prkcb 7 122289125 to 122634402 345277 + protein coding gene protein kinase C, beta
Tssr68879 7 122289310 to 122289347 37 + TSS region transcription start site region 68879
Tssr68880 7 122291315 to 122291323 8 + TSS region transcription start site region 68880
Tssr68881 7 122295751 to 122295755 4 + TSS region transcription start site region 68881
Tssr68882 7 122295784 to 122295789 5 + TSS region transcription start site region 68882
Tssr68883 7 122301267 to 122301278 11 + TSS region transcription start site region 68883
Gm45191 7 122313064 to 122318502 5438 + unclassified gene predicted gene 45191
Tssr68884 7 122337595 to 122337607 12 + TSS region transcription start site region 68884
Gm44664 7 122362000 to 122363785 1785 + unclassified gene predicted gene 44664
Tssr68885 7 122366076 to 122366087 11 + TSS region transcription start site region 68885
Tssr68886 7 122366139 to 122366155 16 + TSS region transcription start site region 68886
Tssr68887 7 122366164 to 122366176 12 + TSS region transcription start site region 68887
Tssr68888 7 122366535 to 122366558 23 + TSS region transcription start site region 68888
Tssr68889 7 122366572 to 122366587 15 + TSS region transcription start site region 68889
Tssr68890 7 122377309 to 122377338 29 + TSS region transcription start site region 68890
Tssr68891 7 122377403 to 122377417 14 + TSS region transcription start site region 68891
Tssr2392 7 122402121 to 122402126 5 - TSS region transcription start site region 2392
Gm44663 7 122402455 to 122405604 3149 + unclassified gene predicted gene 44663
Tssr68892 7 122415714 to 122415720 6 + TSS region transcription start site region 68892
Tssr68893 7 122438650 to 122438652 2 + TSS region transcription start site region 68893
Gm14388 7 122442023 to 122442499 476 + pseudogene predicted gene 14388
Gm26414 7 122446858 to 122447126 268 + unclassified non-coding RNA gene predicted gene, 26414
Gm44745 7 122463438 to 122466160 2722 + unclassified gene predicted gene 44745
Gm14389 7 122484180 to 122484420 240 - pseudogene predicted gene 14389
D7Mit285 7 122486324 to 122486429 105 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 285
Tssr68894 7 122562218 to 122562222 4 + TSS region transcription start site region 68894
Gm44746 7 122590935 to 122592283 1348 + unclassified gene predicted gene 44746
Tssr68895 7 122627618 to 122627623 5 + TSS region transcription start site region 68895
Tssr68896 7 122628440 to 122628448 8 + TSS region transcription start site region 68896
Tssr68897 7 122628813 to 122628825 12 + TSS region transcription start site region 68897
Tssr68898 7 122628898 to 122628905 7 + TSS region transcription start site region 68898
Tssr68899 7 122630857 to 122630891 34 + TSS region transcription start site region 68899
Tssr68900 7 122632302 to 122632307 5 + TSS region transcription start site region 68900
Tssr68901 7 122633143 to 122633190 47 + TSS region transcription start site region 68901
Bsbob2 7 122651440 to 129217600 6566160 QTL BSB obesity 2
D7Mit8 7 122651440 to 122651588 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 8
Tlsm1 7 122651440 to 135569172 12917732 QTL thymic lymphoma susceptible 1
Mobq1 7 122651440 to 122651588 148 QTL multigenic obesity QTL 1
Cpgi19670 7 122670611 to 122671560 949 CpG island CpG island 19670
Tssr68902 7 122670800 to 122670827 27 + TSS region transcription start site region 68902
Tssr68903 7 122671123 to 122671130 7 + TSS region transcription start site region 68903
Tssr68904 7 122671144 to 122671158 14 + TSS region transcription start site region 68904
Tssr68905 7 122671187 to 122671198 11 + TSS region transcription start site region 68905
Tssr68906 7 122671202 to 122671207 5 + TSS region transcription start site region 68906
Tssr68907 7 122671208 to 122671218 10 + TSS region transcription start site region 68907
Tssr68908 7 122671317 to 122671324 7 + TSS region transcription start site region 68908
Tssr68909 7 122671334 to 122671363 29 + TSS region transcription start site region 68909
Tssr68910 7 122671378 to 122671396 18 + TSS region transcription start site region 68910
Tssr68911 7 122671401 to 122671417 16 + TSS region transcription start site region 68911
Tssr68912 7 122671468 to 122671482 14 + TSS region transcription start site region 68912
Cacng3 7 122671744 to 122769393 97649 + protein coding gene calcium channel, voltage-dependent, gamma subunit 3
Gm44749 7 122700291 to 122701918 1627 - unclassified gene predicted gene 44749
D7Mit331 7 122736370 to 122736519 149 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 331
Asrq7a 7 122750785 to 122750785 0 QTL acoustic startle response 7a
D7Mit358 7 122753625 to 122753716 91 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 358