Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:120357107-121720269

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abca15 7 120328670 to 120407687 79017 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 15
D7Mit133 7 120358247 to 120358376 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 133
Cpgi19643 7 120361327 to 120361514 187 CpG island CpG island 19643
Tssr68783 7 120409635 to 120409699 64 + TSS region transcription start site region 68783
Abca16 7 120409647 to 120544813 135166 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 16
Cpgi19644 7 120504366 to 120504722 356 CpG island CpG island 19644
Tssr68784 7 120504609 to 120504621 12 + TSS region transcription start site region 68784
Gm9165 7 120504658 to 120513772 9114 + pseudogene predicted gene 9165
Tssr68785 7 120553039 to 120553058 19 + TSS region transcription start site region 68785
Tssr68786 7 120553060 to 120553074 14 + TSS region transcription start site region 68786
Gm16475 7 120553268 to 120556777 3509 + pseudogene predicted pseudogene 16475
Gm46019 7 120579359 to 120582592 3233 + lncRNA gene predicted gene, 46019
Gm46020 7 120582601 to 120589816 7215 + lncRNA gene predicted gene, 46020
Gm4105 7 120587962 to 120588422 460 + pseudogene predicted gene 4105
Gm32916 7 120593151 to 120629769 36618 + lincRNA gene predicted gene, 32916
E130201H02Rik 7 120597625 to 120598475 850 + pseudogene RIKEN cDNA E130201H02 gene
Cpgi19645 7 120597629 to 120598210 581 CpG island CpG island 19645
Tssr68787 7 120624234 to 120624246 12 + TSS region transcription start site region 68787
Gm7226 7 120624239 to 120624574 335 + pseudogene predicted gene 7226
Gm45113 7 120624249 to 120624413 164 + pseudogene predicted gene 45113
Gm45112 7 120629762 to 120634886 5124 - unclassified gene predicted gene 45112
Cpgi19646 7 120634703 to 120635960 1257 CpG island CpG island 19646
Uqcrc2 7 120635189 to 120659523 24334 + protein coding gene ubiquinol cytochrome c reductase core protein 2
Tssr68788 7 120635200 to 120635251 51 + TSS region transcription start site region 68788
Pdzd9 7 120658731 to 120670343 11612 - protein coding gene PDZ domain containing 9
Tssr74523 7 120670222 to 120670228 6 - TSS region transcription start site region 74523
Tssr74524 7 120670239 to 120670255 16 - TSS region transcription start site region 74524
Tssr74525 7 120670256 to 120670263 7 - TSS region transcription start site region 74525
4930588G17Rik 7 120670296 to 120675902 5606 + antisense lncRNA gene RIKEN cDNA 4930588G17 gene
9030407P20Rik 7 120673436 to 120677570 4134 - unclassified non-coding RNA gene RIKEN cDNA 9030407P20 gene
Cpgi19647 7 120677187 to 120678426 1239 CpG island CpG island 19647
Tssr68789 7 120677579 to 120677630 51 + TSS region transcription start site region 68789
Mosmo 7 120677620 to 120734854 57234 + protein coding gene modulator of smoothened
Gm44661 7 120736459 to 120739961 3502 - unclassified gene predicted gene 44661
Vwa3a 7 120739318 to 120805742 66424 + protein coding gene von Willebrand factor A domain containing 3A
Tssr68790 7 120739522 to 120739544 22 + TSS region transcription start site region 68790
Tssr68791 7 120739884 to 120739908 24 + TSS region transcription start site region 68791
Tssr68792 7 120739913 to 120739925 12 + TSS region transcription start site region 68792
Tssr68793 7 120740005 to 120740036 31 + TSS region transcription start site region 68793
Tssr68794 7 120740037 to 120740051 14 + TSS region transcription start site region 68794
Tssr74526 7 120751372 to 120751375 3 - TSS region transcription start site region 74526
Tssr74527 7 120754091 to 120754135 44 - TSS region transcription start site region 74527
Cpgi19648 7 120809789 to 120810209 420 CpG island CpG island 19648
Gm5737 7 120812365 to 120831193 18828 + protein coding gene predicted gene 5737
Cpgi19649 7 120830687 to 120831471 784 CpG island CpG island 19649
n-TLtag1 7 120835479 to 120835560 81 - tRNA gene nuclear encoded tRNA leucine 1 (anticodon TAG)
Cpgi19650 7 120835527 to 120836111 584 CpG island CpG island 19650
Gm36449 7 120841127 to 120842637 1510 - lncRNA gene predicted gene, 36449
Cpgi19651 7 120842663 to 120843758 1095 CpG island CpG island 19651
Tssr68795 7 120842743 to 120842758 15 + TSS region transcription start site region 68795
Tssr68796 7 120842824 to 120842836 12 + TSS region transcription start site region 68796
Eef2k 7 120842829 to 120907219 64390 + protein coding gene eukaryotic elongation factor-2 kinase
Tssr68797 7 120842838 to 120842910 72 + TSS region transcription start site region 68797
Tssr68798 7 120842916 to 120842925 9 + TSS region transcription start site region 68798
Tssr68799 7 120843551 to 120843572 21 + TSS region transcription start site region 68799
Tssr68800 7 120851183 to 120851194 11 + TSS region transcription start site region 68800
Gm15774 7 120871391 to 120880298 8907 - antisense lncRNA gene predicted gene 15774
Tssr68801 7 120876204 to 120876227 23 + TSS region transcription start site region 68801
Tssr74528 7 120880909 to 120880911 2 - TSS region transcription start site region 74528
Gm45047 7 120890705 to 120891013 308 + unclassified gene predicted gene 45047
Cpgi19652 7 120917456 to 120918541 1085 CpG island CpG island 19652
n-TLaag4 7 120917517 to 120917598 81 + tRNA gene nuclear encoded tRNA leucine 4 (anticodon AAG)
Polr3e 7 120917744 to 120947432 29688 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide E
Tssr68802 7 120917769 to 120917815 46 + TSS region transcription start site region 68802
Tssr68803 7 120940617 to 120940659 42 + TSS region transcription start site region 68803
Tssr68804 7 120940665 to 120940685 20 + TSS region transcription start site region 68804
Cdr2 7 120957036 to 120982312 25276 - protein coding gene cerebellar degeneration-related 2
Cpgi19653 7 120981545 to 120982773 1228 CpG island CpG island 19653
Tssr74529 7 120982260 to 120982305 45 - TSS region transcription start site region 74529
Tssr74530 7 120982323 to 120982332 9 - TSS region transcription start site region 74530
Tssr68805 7 120982480 to 120982489 9 + TSS region transcription start site region 68805
Tssr68806 7 120982496 to 120982514 18 + TSS region transcription start site region 68806
Mfsd13b 7 120982509 to 121014787 32278 + protein coding gene major facilitator superfamily domain containing 13B
Tssr68807 7 120982521 to 120982546 25 + TSS region transcription start site region 68807
Tssr68808 7 120982549 to 120982552 3 + TSS region transcription start site region 68808
Gm9234 7 121015142 to 121015633 491 - pseudogene predicted pseudogene 9234
Gm25924 7 121024360 to 121024462 102 - snRNA gene predicted gene, 25924
D7Mit240 7 121031359 to 121031460 101 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 240
Tssr68809 7 121032473 to 121032520 47 + TSS region transcription start site region 68809
Tssr68810 7 121032755 to 121032767 12 + TSS region transcription start site region 68810
Tssr68811 7 121032776 to 121032787 11 + TSS region transcription start site region 68811
Tssr68812 7 121032791 to 121032802 11 + TSS region transcription start site region 68812
Gm9905 7 121033252 to 121035096 1844 - protein coding gene predicted gene 9905
Cpgi19654 7 121034034 to 121035548 1514 CpG island CpG island 19654
Tssr68813 7 121034416 to 121034421 5 + TSS region transcription start site region 68813
Tssr74531 7 121034423 to 121034450 27 - TSS region transcription start site region 74531
Mettl9 7 121034445 to 121078329 43884 + protein coding gene methyltransferase like 9
Tssr68814 7 121034520 to 121034529 9 + TSS region transcription start site region 68814
Tssr68815 7 121034542 to 121034580 38 + TSS region transcription start site region 68815
Tssr68816 7 121034581 to 121034718 137 + TSS region transcription start site region 68816
Tssr68817 7 121034739 to 121034765 26 + TSS region transcription start site region 68817
Tssr68818 7 121034782 to 121034793 11 + TSS region transcription start site region 68818
Tssr68819 7 121035560 to 121035566 6 + TSS region transcription start site region 68819
Tssr68820 7 121035619 to 121035660 41 + TSS region transcription start site region 68820
Tssr68821 7 121036666 to 121036673 7 + TSS region transcription start site region 68821
Gm9179 7 121037107 to 121040269 3162 - pseudogene predicted gene 9179
Gm45137 7 121039138 to 121043552 4414 + unclassified gene predicted gene 45137
Gm27991 7 121040344 to 121040480 136 - snoRNA gene predicted gene, 27991
Tssr68822 7 121046005 to 121046018 13 + TSS region transcription start site region 68822
Gm44901 7 121052345 to 121056321 3976 + unclassified gene predicted gene 44901
Tssr68823 7 121053730 to 121053734 4 + TSS region transcription start site region 68823
2210406H18Rik 7 121062852 to 121063959 1107 - unclassified gene RIKEN cDNA 2210406H18 gene
D7Mit58 7 121064036 to 121064185 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 58
Igsf6 7 121064067 to 121074572 10505 - protein coding gene immunoglobulin superfamily, member 6
Tssr74532 7 121064168 to 121064184 16 - TSS region transcription start site region 74532
Tssr74533 7 121064189 to 121064202 13 - TSS region transcription start site region 74533
Tssr74534 7 121064218 to 121064223 5 - TSS region transcription start site region 74534
Tssr74535 7 121064244 to 121064254 10 - TSS region transcription start site region 74535
Tssr74536 7 121064285 to 121064296 11 - TSS region transcription start site region 74536
Tssr74537 7 121064326 to 121064340 14 - TSS region transcription start site region 74537
Tssr74538 7 121064385 to 121064394 9 - TSS region transcription start site region 74538
Tssr74539 7 121064464 to 121064478 14 - TSS region transcription start site region 74539
Tssr74540 7 121064480 to 121064497 17 - TSS region transcription start site region 74540
Tssr74541 7 121064635 to 121064647 12 - TSS region transcription start site region 74541
Tssr74542 7 121064679 to 121064702 23 - TSS region transcription start site region 74542
Tssr74543 7 121064770 to 121064795 25 - TSS region transcription start site region 74543
Tssr74544 7 121064842 to 121064856 14 - TSS region transcription start site region 74544
Tssr68824 7 121065116 to 121065136 20 + TSS region transcription start site region 68824
Tssr74545 7 121065297 to 121065367 70 - TSS region transcription start site region 74545
Tssr74546 7 121065800 to 121065812 12 - TSS region transcription start site region 74546
Tssr74547 7 121068281 to 121068357 76 - TSS region transcription start site region 74547
Tssr74548 7 121069598 to 121069610 12 - TSS region transcription start site region 74548
Tssr74549 7 121069669 to 121069674 5 - TSS region transcription start site region 74549
Tssr74550 7 121074501 to 121074526 25 - TSS region transcription start site region 74550
Tssr74551 7 121074540 to 121074555 15 - TSS region transcription start site region 74551
Tssr68825 7 121074633 to 121074648 15 + TSS region transcription start site region 68825
Tssr68826 7 121074651 to 121074662 11 + TSS region transcription start site region 68826
Tssr68827 7 121074666 to 121074673 7 + TSS region transcription start site region 68827
Tssr68828 7 121074685 to 121074713 28 + TSS region transcription start site region 68828
Tssr68829 7 121074722 to 121074733 11 + TSS region transcription start site region 68829
Tssr68830 7 121075295 to 121075329 34 + TSS region transcription start site region 68830
Tssr68831 7 121075812 to 121075823 11 + TSS region transcription start site region 68831
Tssr68832 7 121075841 to 121075858 17 + TSS region transcription start site region 68832
Tssr68833 7 121083403 to 121083404 1 + TSS region transcription start site region 68833
Tssr68834 7 121083414 to 121083434 20 + TSS region transcription start site region 68834
Otoa 7 121083438 to 121163093 79655 + protein coding gene otoancorin
Tssr68835 7 121089936 to 121089939 3 + TSS region transcription start site region 68835
Tssr68836 7 121089940 to 121089943 3 + TSS region transcription start site region 68836
Gm9240 7 121223253 to 121223994 741 - pseudogene predicted gene 9240
Cpgi19655 7 121245535 to 121246246 711 CpG island CpG island 19655
Gm45079 7 121257359 to 121295852 38493 + lincRNA gene predicted gene 45079
4930486N12Rik 7 121258764 to 121259395 631 - unclassified gene RIKEN cDNA 4930486N12 gene
Gm36736 7 121312974 to 121337213 24239 - antisense lncRNA gene predicted gene, 36736
D7Mit254 7 121324091 to 121324214 123 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 254
Cpgi19656 7 121391576 to 121393343 1767 CpG island CpG island 19656
Hs3st2 7 121391859 to 121501770 109911 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 2
Tssr68837 7 121392266 to 121392286 20 + TSS region transcription start site region 68837
Gm39081 7 121479952 to 121540236 60284 - lncRNA gene predicted gene, 39081
D7Mit204 7 121483802 to 121483933 131 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 204
Tssr74552 7 121517184 to 121517188 4 - TSS region transcription start site region 74552
Tssr74553 7 121520616 to 121520619 3 - TSS region transcription start site region 74553
Cpgi19657 7 121539517 to 121539729 212 CpG island CpG island 19657
4933432K03Rik 7 121587386 to 121589836 2450 - antisense lncRNA gene RIKEN cDNA 4933432K03 gene
Tssr2389 7 121589409 to 121589427 18 - TSS region transcription start site region 2389
Tssr2390 7 121589803 to 121589812 9 - TSS region transcription start site region 2390
Tssr74554 7 121589823 to 121589850 27 - TSS region transcription start site region 74554
Tssr74555 7 121589851 to 121589853 2 - TSS region transcription start site region 74555
Tssr74556 7 121589854 to 121589863 9 - TSS region transcription start site region 74556
1700025J12Rik 7 121589903 to 121591591 1688 + lincRNA gene RIKEN cDNA 1700025J12 gene
Usp31 7 121642021 to 121707253 65232 - protein coding gene ubiquitin specific peptidase 31
D7Mit283 7 121684447 to 121684559 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 283
Cpgi19658 7 121706362 to 121707868 1506 CpG island CpG island 19658
1700069B07Rik 7 121707075 to 121708013 938 + antisense lncRNA gene RIKEN cDNA 1700069B07 gene
Tssr74557 7 121707384 to 121707460 76 - TSS region transcription start site region 74557
Tssr74558 7 121707463 to 121707472 9 - TSS region transcription start site region 74558