Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:12022488-13002512

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm18854 7 12025451 to 12030404 4953 + pseudogene predicted gene, 18854
Vmn1r77 7 12036846 to 12042219 5373 + protein coding gene vomeronasal 1 receptor 77
Gm10179 7 12085925 to 12086612 687 - pseudogene predicted gene 10179
Vmn1r-ps61 7 12091277 to 12092098 821 + pseudogene vomeronasal 1 receptor, pseudogene 61
Gm45562 7 12101624 to 12105427 3803 - pseudogene predicted gene 45562
Vmn1r-ps62 7 12113259 to 12114076 817 + pseudogene vomeronasal 1 receptor, pseudogene 62
Gm45498 7 12123641 to 12123923 282 + pseudogene predicted gene 45498
Vmn1r-ps63 7 12138326 to 12139311 985 + pseudogene vomeronasal 1 receptor, pseudogene 63
Vmn1r78 7 12152464 to 12153405 941 + protein coding gene vomeronasal 1 receptor 78
Gm45365 7 12157091 to 12157346 255 + pseudogene predicted gene 45365
Vmn1r79 7 12176193 to 12177113 920 + protein coding gene vomeronasal 1 receptor 79
Gm19201 7 12182468 to 12183245 777 - pseudogene predicted gene, 19201
Vmn1r80 7 12192965 to 12193891 926 + protein coding gene vomeronasal 1 receptor 80
Vmn1r-ps64 7 12201702 to 12202356 654 + pseudogene vomeronasal 1 receptor, pseudogene 64
Gm45364 7 12206195 to 12206353 158 - pseudogene predicted gene 45364
Vmn1r-ps65 7 12214595 to 12215545 950 + pseudogene vomeronasal 1 receptor, pseudogene 65
Gm45367 7 12220096 to 12220442 346 - pseudogene predicted gene 45367
Gm4224 7 12221316 to 12225807 4491 + lincRNA gene predicted gene 4224
Vmn1r81 7 12259759 to 12260679 920 - protein coding gene vomeronasal 1 receptor 81
Vmn1r82 7 12304805 to 12305719 914 + protein coding gene vomeronasal 1 receptor 82
Vmn1r83 7 12320250 to 12322128 1878 - protein coding gene vomeronasal 1 receptor 83
Gm23521 7 12358898 to 12359007 109 - miRNA gene predicted gene, 23521
Vmn1r84 7 12361808 to 12362764 956 - protein coding gene vomeronasal 1 receptor 84
Vmn1r-ps66 7 12392272 to 12392883 611 - pseudogene vomeronasal 1 receptor, pseudogene 66
Vmn1r-ps67 7 12399048 to 12399726 678 - pseudogene vomeronasal 1 receptor, pseudogene 67
Vmn1r-ps68 7 12404099 to 12404485 386 - pseudogene vomeronasal 1 receptor, pseudogene 68
Zfp551 7 12415153 to 12422751 7598 - protein coding gene zinc fingr protein 551
Cpgi18313 7 12422331 to 12422775 444 CpG island CpG island 18313
Vmn2r-ps53 7 12445358 to 12468852 23494 + pseudogene vomeronasal 2, receptor, pseudogene 53
Cpgi18314 7 12478164 to 12478827 663 CpG island CpG island 18314
Zfp606 7 12478293 to 12496235 17942 + protein coding gene zinc finger protein 606
Tssr64471 7 12478294 to 12478313 19 + TSS region transcription start site region 64471
Tssr64472 7 12478319 to 12478372 53 + TSS region transcription start site region 64472
Tssr64473 7 12479154 to 12479159 5 + TSS region transcription start site region 64473
2700057C20Rik 7 12498749 to 12499846 1097 unclassified gene RIKEN cDNA 2700057C20 gene
Tssr64474 7 12512488 to 12512512 24 + TSS region transcription start site region 64474
Tssr64475 7 12512513 to 12512520 7 + TSS region transcription start site region 64475
2900092C05Rik 7 12512517 to 12556323 43806 + protein coding gene RIKEN cDNA 2900092C05 gene
Tssr64476 7 12512522 to 12512540 18 + TSS region transcription start site region 64476
Gm15877 7 12517405 to 12518368 963 + pseudogene predicted gene 15877
Gm45475 7 12559860 to 12560168 308 + pseudogene predicted gene 45475
Vmn2r53 7 12581470 to 12606544 25074 - protein coding gene vomeronasal 2, receptor 53
Gm15773 7 12603196 to 12604643 1447 + pseudogene predicted gene 15773
Tssr64477 7 12603573 to 12603600 27 + TSS region transcription start site region 64477
Tssr64478 7 12603725 to 12603730 5 + TSS region transcription start site region 64478
Vmn2r54 7 12615233 to 12636134 20901 - protein coding gene vomeronasal 2, receptor 54
Vmn2r55 7 12651706 to 12684991 33285 - protein coding gene vomeronasal 2, receptor 55
Vmn2r56 7 12693860 to 12733320 39460 - protein coding gene vomeronasal 2, receptor 56
Gm6946 7 12742686 to 12743672 986 + pseudogene predicted gene 6946
Gm18205 7 12760708 to 12761548 840 + pseudogene predicted gene, 18205
Zscan18 7 12768090 to 12803635 35545 - protein coding gene zinc finger and SCAN domain containing 18
Cpgi18315 7 12779893 to 12781118 1225 CpG island CpG island 18315
Tssr70621 7 12780607 to 12780679 72 - TSS region transcription start site region 70621
1700047O18Rik 7 12780860 to 12781602 742 + unclassified gene RIKEN cDNA 1700047O18 gene
Gm4247 7 12793828 to 12794869 1041 - pseudogene predicted gene 4247
Gm18194 7 12796855 to 12797491 636 - pseudogene predicted gene, 18194
Gm45315 7 12797529 to 12797861 332 + pseudogene predicted gene 45315
Cpgi18316 7 12803219 to 12803956 737 CpG island CpG island 18316
A930003G23Rik 7 12803545 to 12804778 1233 unclassified gene RIKEN cDNA A930003G23 gene
Tssr70622 7 12803607 to 12803644 37 - TSS region transcription start site region 70622
Zfp329 7 12804977 to 12818858 13881 - protein coding gene zinc finger protein 329
Tssr70623 7 12807309 to 12807314 5 - TSS region transcription start site region 70623
Cpgi18317 7 12818398 to 12819011 613 CpG island CpG island 18317
Tssr70624 7 12818837 to 12818865 28 - TSS region transcription start site region 70624
Tssr70625 7 12818866 to 12818871 5 - TSS region transcription start site region 70625
Gm45593 7 12825918 to 12828121 2203 + lincRNA gene predicted gene 45593
Cpgi18318 7 12834551 to 12835419 868 CpG island CpG island 18318
Tssr64479 7 12834743 to 12834811 68 + TSS region transcription start site region 64479
Zfp110 7 12834810 to 12850584 15774 + protein coding gene zinc finger protein 110
Tssr64480 7 12834973 to 12835052 79 + TSS region transcription start site region 64480
Tssr64481 7 12835248 to 12835261 13 + TSS region transcription start site region 64481
Tssr64482 7 12835950 to 12835954 4 + TSS region transcription start site region 64482
Gm31152 7 12864284 to 12869804 5520 - lincRNA gene predicted gene, 31152
Gm45971 7 12870869 to 12873480 2611 - lncRNA gene predicted gene, 45971
Cpgi18319 7 12880840 to 12881677 837 CpG island CpG island 18319
Tssr64483 7 12881165 to 12881204 39 + TSS region transcription start site region 64483
Zfp128 7 12881178 to 12893422 12244 + protein coding gene zinc finger protein 128
Cpgi18320 7 12897687 to 12898154 467 CpG island CpG island 18320
Tssr64484 7 12897800 to 12897885 85 + TSS region transcription start site region 64484
Zscan22 7 12897815 to 12909083 11268 + protein coding gene zinc finger and SCAN domain containing 22
Cpgi18321 7 12910150 to 12910624 474 CpG island CpG island 18321
Cpgi18322 7 12921680 to 12922785 1105 CpG island CpG island 18322
Tssr70626 7 12922070 to 12922096 26 - TSS region transcription start site region 70626
Rps5 7 12922311 to 12926686 4375 + protein coding gene ribosomal protein S5
Tssr64485 7 12922315 to 12922320 5 + TSS region transcription start site region 64485
Tssr64486 7 12922954 to 12922972 18 + TSS region transcription start site region 64486
Tssr64487 7 12925405 to 12925428 23 + TSS region transcription start site region 64487
Tssr64488 7 12925439 to 12925455 16 + TSS region transcription start site region 64488
Tssr64489 7 12925489 to 12925504 15 + TSS region transcription start site region 64489
Tssr64490 7 12925516 to 12925530 14 + TSS region transcription start site region 64490
Tssr64491 7 12925729 to 12925742 13 + TSS region transcription start site region 64491
Tssr64492 7 12925746 to 12925770 24 + TSS region transcription start site region 64492
Tssr70627 7 12926676 to 12926688 12 - TSS region transcription start site region 70627
Tssr64493 7 12927341 to 12927350 9 + TSS region transcription start site region 64493
Tssr64494 7 12927387 to 12927402 15 + TSS region transcription start site region 64494
Tssr64495 7 12927410 to 12927439 29 + TSS region transcription start site region 64495
Rnf225 7 12927416 to 12931072 3656 + protein coding gene ring finger protein 225
Cpgi18323 7 12927888 to 12928907 1019 CpG island CpG island 18323
Tssr64496 7 12928268 to 12928300 32 + TSS region transcription start site region 64496
Tssr64497 7 12928306 to 12928328 22 + TSS region transcription start site region 64497
Gm26325 7 12930774 to 12930880 106 + snRNA gene predicted gene, 26325
1810019N24Rik 7 12948592 to 12961768 13176 - lincRNA gene RIKEN cDNA 1810019N24 gene
Cpgi18324 7 12949332 to 12950118 786 CpG island CpG island 18324
Tssr64498 7 12949764 to 12949776 12 + TSS region transcription start site region 64498
Gm29638 7 12959299 to 12961887 2588 + lincRNA gene predicted gene 29638
Cpgi18325 7 12961515 to 12962071 556 CpG island CpG island 18325
Tssr70628 7 12961808 to 12961827 19 - TSS region transcription start site region 70628
Tssr64499 7 12962009 to 12962022 13 + TSS region transcription start site region 64499
Cpgi18326 7 12965713 to 12966454 741 CpG island CpG island 18326
Tssr64500 7 12965831 to 12965894 63 + TSS region transcription start site region 64500
Zfp324 7 12965838 to 12974236 8398 + protein coding gene zinc finger protein 324
Tssr64501 7 12965962 to 12965973 11 + TSS region transcription start site region 64501
Tssr64502 7 12966230 to 12966261 31 + TSS region transcription start site region 64502
Cpgi18327 7 12970751 to 12971592 841 CpG island CpG island 18327
Cpgi18328 7 12977692 to 12978530 838 CpG island CpG island 18328
Tssr64503 7 12977834 to 12977900 66 + TSS region transcription start site region 64503
Zfp446 7 12977848 to 12985714 7866 + protein coding gene zinc finger protein 446
Tssr64504 7 12978212 to 12978232 20 + TSS region transcription start site region 64504
Tssr64505 7 12978277 to 12978285 8 + TSS region transcription start site region 64505
Tssr64506 7 12978323 to 12978338 15 + TSS region transcription start site region 64506
Tssr64507 7 12978344 to 12978355 11 + TSS region transcription start site region 64507
Slc27a5 7 12988346 to 12998192 9846 - protein coding gene solute carrier family 27 (fatty acid transporter), member 5
Tssr70629 7 12991621 to 12991625 4 - TSS region transcription start site region 70629
Tssr70630 7 12997416 to 12997453 37 - TSS region transcription start site region 70630
Tssr70631 7 12997667 to 12997671 4 - TSS region transcription start site region 70631
Tssr70632 7 12998110 to 12998125 15 - TSS region transcription start site region 70632
Tssr70633 7 12998140 to 12998171 31 - TSS region transcription start site region 70633
Tssr70634 7 12998172 to 12998210 38 - TSS region transcription start site region 70634
Tssr2079 7 12999076 to 12999090 14 + TSS region transcription start site region 2079
Tssr64508 7 12999121 to 12999130 9 + TSS region transcription start site region 64508