Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:120159609-120849621

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930505K13Rik 7 120156115 to 120166000 9885 + lincRNA gene RIKEN cDNA 4930505K13 gene
Tssr68772 7 120173827 to 120173832 5 + TSS region transcription start site region 68772
Tssr68773 7 120173847 to 120173893 46 + TSS region transcription start site region 68773
Anks4b 7 120173858 to 120183716 9858 + protein coding gene ankyrin repeat and sterile alpha motif domain containing 4B
Tssr68774 7 120173902 to 120173914 12 + TSS region transcription start site region 68774
Tssr68775 7 120184508 to 120184519 11 + TSS region transcription start site region 68775
Crym 7 120186384 to 120201988 15604 - protein coding gene crystallin, mu
Tssr74516 7 120201382 to 120201406 24 - TSS region transcription start site region 74516
Tssr74517 7 120201473 to 120201500 27 - TSS region transcription start site region 74517
Cpgi19640 7 120201579 to 120202098 519 CpG island CpG island 19640
Tssr74518 7 120201950 to 120201967 17 - TSS region transcription start site region 74518
Tssr74519 7 120201971 to 120202004 33 - TSS region transcription start site region 74519
Tssr74520 7 120202007 to 120202029 22 - TSS region transcription start site region 74520
Tssr74521 7 120202104 to 120202123 19 - TSS region transcription start site region 74521
Tssr74522 7 120202139 to 120202149 10 - TSS region transcription start site region 74522
Cpgi19641 7 120203757 to 120204167 410 CpG island CpG island 19641
Tssr68776 7 120203934 to 120203943 9 + TSS region transcription start site region 68776
Tssr68777 7 120203958 to 120203968 10 + TSS region transcription start site region 68777
Abca14 7 120203961 to 120325352 121391 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 14
Tssr68778 7 120203972 to 120203985 13 + TSS region transcription start site region 68778
Tssr68779 7 120204000 to 120204013 13 + TSS region transcription start site region 68779
Tssr68780 7 120204021 to 120204022 1 + TSS region transcription start site region 68780
Cpgi19642 7 120328483 to 120328792 309 CpG island CpG island 19642
Tssr68781 7 120328660 to 120328691 31 + TSS region transcription start site region 68781
Abca15 7 120328670 to 120407687 79017 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 15
Tssr68782 7 120328693 to 120328700 7 + TSS region transcription start site region 68782
D7Mit133 7 120358247 to 120358376 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 133
Cpgi19643 7 120361327 to 120361514 187 CpG island CpG island 19643
Tssr68783 7 120409635 to 120409699 64 + TSS region transcription start site region 68783
Abca16 7 120409647 to 120544813 135166 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 16
Cpgi19644 7 120504366 to 120504722 356 CpG island CpG island 19644
Tssr68784 7 120504609 to 120504621 12 + TSS region transcription start site region 68784
Gm9165 7 120504658 to 120513772 9114 + pseudogene predicted gene 9165
Tssr68785 7 120553039 to 120553058 19 + TSS region transcription start site region 68785
Tssr68786 7 120553060 to 120553074 14 + TSS region transcription start site region 68786
Gm16475 7 120553268 to 120556777 3509 + pseudogene predicted pseudogene 16475
Gm46019 7 120579359 to 120582592 3233 + lncRNA gene predicted gene, 46019
Gm46020 7 120582601 to 120589816 7215 + lncRNA gene predicted gene, 46020
Gm4105 7 120587962 to 120588422 460 + pseudogene predicted gene 4105
Gm32916 7 120593151 to 120629769 36618 + lincRNA gene predicted gene, 32916
E130201H02Rik 7 120597625 to 120598475 850 + pseudogene RIKEN cDNA E130201H02 gene
Cpgi19645 7 120597629 to 120598210 581 CpG island CpG island 19645
Tssr68787 7 120624234 to 120624246 12 + TSS region transcription start site region 68787
Gm7226 7 120624239 to 120624574 335 + pseudogene predicted gene 7226
Gm45113 7 120624249 to 120624413 164 + pseudogene predicted gene 45113
Gm45112 7 120629762 to 120634886 5124 - unclassified gene predicted gene 45112
Cpgi19646 7 120634703 to 120635960 1257 CpG island CpG island 19646
Uqcrc2 7 120635189 to 120659523 24334 + protein coding gene ubiquinol cytochrome c reductase core protein 2
Tssr68788 7 120635200 to 120635251 51 + TSS region transcription start site region 68788
Pdzd9 7 120658731 to 120670343 11612 - protein coding gene PDZ domain containing 9
Tssr74523 7 120670222 to 120670228 6 - TSS region transcription start site region 74523
Tssr74524 7 120670239 to 120670255 16 - TSS region transcription start site region 74524
Tssr74525 7 120670256 to 120670263 7 - TSS region transcription start site region 74525
4930588G17Rik 7 120670296 to 120675902 5606 + antisense lncRNA gene RIKEN cDNA 4930588G17 gene
9030407P20Rik 7 120673436 to 120677570 4134 - unclassified non-coding RNA gene RIKEN cDNA 9030407P20 gene
Cpgi19647 7 120677187 to 120678426 1239 CpG island CpG island 19647
Tssr68789 7 120677579 to 120677630 51 + TSS region transcription start site region 68789
Mosmo 7 120677620 to 120734854 57234 + protein coding gene modulator of smoothened
Gm44661 7 120736459 to 120739961 3502 - unclassified gene predicted gene 44661
Vwa3a 7 120739318 to 120805742 66424 + protein coding gene von Willebrand factor A domain containing 3A
Tssr68790 7 120739522 to 120739544 22 + TSS region transcription start site region 68790
Tssr68791 7 120739884 to 120739908 24 + TSS region transcription start site region 68791
Tssr68792 7 120739913 to 120739925 12 + TSS region transcription start site region 68792
Tssr68793 7 120740005 to 120740036 31 + TSS region transcription start site region 68793
Tssr68794 7 120740037 to 120740051 14 + TSS region transcription start site region 68794
Tssr74526 7 120751372 to 120751375 3 - TSS region transcription start site region 74526
Tssr74527 7 120754091 to 120754135 44 - TSS region transcription start site region 74527
Cpgi19648 7 120809789 to 120810209 420 CpG island CpG island 19648
Gm5737 7 120812365 to 120831193 18828 + protein coding gene predicted gene 5737
Cpgi19649 7 120830687 to 120831471 784 CpG island CpG island 19649
n-TLtag1 7 120835479 to 120835560 81 - tRNA gene nuclear encoded tRNA leucine 1 (anticodon TAG)
Cpgi19650 7 120835527 to 120836111 584 CpG island CpG island 19650
Gm36449 7 120841127 to 120842637 1510 - lncRNA gene predicted gene, 36449
Cpgi19651 7 120842663 to 120843758 1095 CpG island CpG island 19651
Tssr68795 7 120842743 to 120842758 15 + TSS region transcription start site region 68795
Tssr68796 7 120842824 to 120842836 12 + TSS region transcription start site region 68796
Eef2k 7 120842829 to 120907219 64390 + protein coding gene eukaryotic elongation factor-2 kinase
Tssr68797 7 120842838 to 120842910 72 + TSS region transcription start site region 68797
Tssr68798 7 120842916 to 120842925 9 + TSS region transcription start site region 68798
Tssr68799 7 120843551 to 120843572 21 + TSS region transcription start site region 68799