Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:119636285-120156305

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsm1 7 119617763 to 119662515 44752 + protein coding gene acyl-CoA synthetase medium-chain family member 1
Gm19950 7 119626519 to 119642645 16126 - antisense lncRNA gene predicted gene, 19950
Tssr68750 7 119640297 to 119640305 8 + TSS region transcription start site region 68750
Tssr74495 7 119642414 to 119642431 17 - TSS region transcription start site region 74495
Tssr74496 7 119642436 to 119642449 13 - TSS region transcription start site region 74496
Tssr74497 7 119642454 to 119642466 12 - TSS region transcription start site region 74497
D7Mit330 7 119656690 to 119656814 124 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 330
Acsm4 7 119690026 to 119714565 24539 + protein coding gene acyl-CoA synthetase medium-chain family member 4
Thumpd1 7 119715093 to 119720798 5705 - protein coding gene THUMP domain containing 1
Cpgi19634 7 119720200 to 119721031 831 CpG island CpG island 19634
Tssr68751 7 119720417 to 119720425 8 + TSS region transcription start site region 68751
Tssr74498 7 119720742 to 119720803 61 - TSS region transcription start site region 74498
Gm44866 7 119720811 to 119735760 14949 - lincRNA gene predicted gene 44866
Tssr68752 7 119730735 to 119730740 5 + TSS region transcription start site region 68752
Gm39080 7 119730804 to 119739429 8625 + lncRNA gene predicted gene, 39080
Cpgi19635 7 119739830 to 119740113 283 CpG island CpG island 19635
Tssr68753 7 119739882 to 119739910 28 + TSS region transcription start site region 68753
Ppp1ccb 7 119739926 to 119742226 2300 + pseudogene protein phosphatase 1 catalytic subunit gamma B
Gm19963 7 119742856 to 119744110 1254 - pseudogene predicted gene, 19963
Cpgi19636 7 119744172 to 119744698 526 CpG island CpG island 19636
Gm44966 7 119752677 to 119752833 156 + pseudogene predicted gene 44966
Tssr74499 7 119760795 to 119760838 43 - TSS region transcription start site region 74499
Acsm3 7 119760883 to 119784896 24013 + protein coding gene acyl-CoA synthetase medium-chain family member 3
Tssr68754 7 119760918 to 119760934 16 + TSS region transcription start site region 68754
Tssr68755 7 119760943 to 119760963 20 + TSS region transcription start site region 68755
Tssr68756 7 119760981 to 119760988 7 + TSS region transcription start site region 68756
Eri2 7 119783826 to 119794058 10232 - protein coding gene exoribonuclease 2
Cpgi19637 7 119793667 to 119794610 943 CpG island CpG island 19637
Tssr68757 7 119793741 to 119793752 11 + TSS region transcription start site region 68757
Tssr74500 7 119793945 to 119793956 11 - TSS region transcription start site region 74500
Tssr74501 7 119793958 to 119793992 34 - TSS region transcription start site region 74501
Tssr68758 7 119793987 to 119794012 25 + TSS region transcription start site region 68758
Rexo5 7 119794006 to 119848943 54937 + protein coding gene RNA exonuclease 5
Tssr68759 7 119794021 to 119794045 24 + TSS region transcription start site region 68759
Tssr68760 7 119794102 to 119794157 55 + TSS region transcription start site region 68760
Tssr68761 7 119794268 to 119794294 26 + TSS region transcription start site region 68761
Dcun1d3 7 119853158 to 119896169 43011 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
Tssr68762 7 119861492 to 119861525 33 + TSS region transcription start site region 68762
Tssr74502 7 119861827 to 119861863 36 - TSS region transcription start site region 74502
Tssr2388 7 119878682 to 119878686 4 - TSS region transcription start site region 2388
Tsiq1 7 119885996 to 125542177 5656181 QTL T cell secretion of IL4 QTL 1
D7Mit66 7 119885996 to 119886157 161 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 66
Nilac4 7 119885996 to 119886157 161 QTL nicotine induced locomotor activity 4
Capsq3 7 119886157 to 87493929 -32392228 QTL capsaicin sensitivity related QTL 3
Sst2 7 119886157 to 18994869 -100891288 QTL susceptibility to tuberculosis 2
Idd27 7 119886157 to 79376386 -40509771 QTL insulin dependent diabetes susceptibility 27
Tssr74503 7 119888320 to 119888324 4 - TSS region transcription start site region 74503
Tssr74504 7 119890718 to 119890734 16 - TSS region transcription start site region 74504
Tssr74505 7 119893042 to 119893043 1 - TSS region transcription start site region 74505
Cpgi19638 7 119895322 to 119896486 1164 CpG island CpG island 19638
Tssr74506 7 119895446 to 119895462 16 - TSS region transcription start site region 74506
Tssr74507 7 119895650 to 119895659 9 - TSS region transcription start site region 74507
Tssr74508 7 119895697 to 119895752 55 - TSS region transcription start site region 74508
Lyrm1 7 119895796 to 119916756 20960 + protein coding gene LYR motif containing 1
Tssr68763 7 119895836 to 119895884 48 + TSS region transcription start site region 68763
Tssr74509 7 119896285 to 119896305 20 - TSS region transcription start site region 74509
Tssr74510 7 119896319 to 119896342 23 - TSS region transcription start site region 74510
Tssr68764 7 119896380 to 119896394 14 + TSS region transcription start site region 68764
Tssr68765 7 119896395 to 119896414 19 + TSS region transcription start site region 68765
4930456J16Rik 7 119896692 to 119898371 1679 unclassified gene RIKEN cDNA 4930456J16 gene
Tssr68766 7 119900099 to 119900102 3 + TSS region transcription start site region 68766
Dnah3 7 119922671 to 120095280 172609 - protein coding gene dynein, axonemal, heavy chain 3
Gm40455 7 119966343 to 119994747 28404 + lncRNA gene predicted gene, 40455
Gm25217 7 119969821 to 119969921 100 + snRNA gene predicted gene, 25217
Gm17986 7 120064477 to 120065026 549 - pseudogene predicted gene, 17986
Tssr74511 7 120095264 to 120095312 48 - TSS region transcription start site region 74511
Tssr74512 7 120095651 to 120095674 23 - TSS region transcription start site region 74512
Tssr74513 7 120095683 to 120095711 28 - TSS region transcription start site region 74513
Tssr68767 7 120098566 to 120098570 4 + TSS region transcription start site region 68767
4930560O18Rik 7 120101611 to 120103205 1594 - unclassified gene RIKEN cDNA 4930560O18 gene
Cpgi19639 7 120102200 to 120103292 1092 CpG island CpG island 19639
Tssr68768 7 120102347 to 120102358 11 + TSS region transcription start site region 68768
Tssr68769 7 120102367 to 120102431 64 + TSS region transcription start site region 68769
Tmem159 7 120102426 to 120120987 18561 + protein coding gene transmembrane protein 159
Tssr68770 7 120102447 to 120102464 17 + TSS region transcription start site region 68770
Tssr74514 7 120103214 to 120103225 11 - TSS region transcription start site region 74514
Tssr68771 7 120116754 to 120116763 9 + TSS region transcription start site region 68771
Zp2 7 120126772 to 120145291 18519 - protein coding gene zona pellucida glycoprotein 2
Tssr74515 7 120145286 to 120145292 6 - TSS region transcription start site region 74515
4930505K13Rik 7 120156115 to 120166000 9885 + lincRNA gene RIKEN cDNA 4930505K13 gene