Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:119485996-125942177

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654 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdilt 7 119486587 to 119523489 36902 - protein coding gene protein disulfide isomerase-like, testis expressed
Gm37518 7 119498677 to 119501279 2602 + unclassified gene predicted gene, 37518
Gm26967 7 119512000 to 119514302 2302 - sense intronic lncRNA gene predicted gene, 26967
Tssr74486 7 119523462 to 119523474 12 - TSS region transcription start site region 74486
Tssr74487 7 119523477 to 119523491 14 - TSS region transcription start site region 74487
Acsm5 7 119526131 to 119543360 17229 + protein coding gene acyl-CoA synthetase medium-chain family member 5
Tssr68736 7 119526180 to 119526200 20 + TSS region transcription start site region 68736
Tssr68737 7 119526202 to 119526218 16 + TSS region transcription start site region 68737
Tssr68738 7 119526220 to 119526264 44 + TSS region transcription start site region 68738
Tssr68739 7 119526269 to 119526300 31 + TSS region transcription start site region 68739
Tssr68740 7 119526323 to 119526334 11 + TSS region transcription start site region 68740
Acsm2 7 119554340 to 119600690 46350 + protein coding gene acyl-CoA synthetase medium-chain family member 2
Tssr68741 7 119561699 to 119561726 27 + TSS region transcription start site region 68741
Tssr68742 7 119580930 to 119580934 4 + TSS region transcription start site region 68742
Tssr68743 7 119596035 to 119596045 10 + TSS region transcription start site region 68743
Tssr68744 7 119596114 to 119596121 7 + TSS region transcription start site region 68744
Tssr68745 7 119596765 to 119596770 5 + TSS region transcription start site region 68745
Tssr2387 7 119597257 to 119597264 7 + TSS region transcription start site region 2387
Tssr74488 7 119601113 to 119601118 5 - TSS region transcription start site region 74488
Gm39078 7 119603249 to 119604834 1585 - lincRNA gene predicted gene, 39078
Tssr68746 7 119606813 to 119606837 24 + TSS region transcription start site region 68746
Tssr68747 7 119607014 to 119607029 15 + TSS region transcription start site region 68747
Gm39079 7 119610690 to 119620435 9745 - lncRNA gene predicted gene, 39079
Tssr74489 7 119615712 to 119615716 4 - TSS region transcription start site region 74489
Acsm1 7 119617763 to 119662515 44752 + protein coding gene acyl-CoA synthetase medium-chain family member 1
Tssr68748 7 119617793 to 119617802 9 + TSS region transcription start site region 68748
Tssr68749 7 119617804 to 119617819 15 + TSS region transcription start site region 68749
Tssr74490 7 119620255 to 119620337 82 - TSS region transcription start site region 74490
Tssr74491 7 119620339 to 119620362 23 - TSS region transcription start site region 74491
Tssr74492 7 119620396 to 119620400 4 - TSS region transcription start site region 74492
Gm45792 7 119626519 to 119631058 4539 - antisense lncRNA gene predicted gene 45792
Gm19950 7 119626519 to 119642645 16126 - antisense lncRNA gene predicted gene, 19950
Tssr74493 7 119627765 to 119627774 9 - TSS region transcription start site region 74493
Tssr74494 7 119631611 to 119631618 7 - TSS region transcription start site region 74494
Tssr68750 7 119640297 to 119640305 8 + TSS region transcription start site region 68750
Tssr74495 7 119642414 to 119642431 17 - TSS region transcription start site region 74495
Tssr74496 7 119642436 to 119642449 13 - TSS region transcription start site region 74496
Tssr74497 7 119642454 to 119642466 12 - TSS region transcription start site region 74497
D7Mit330 7 119656690 to 119656814 124 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 330
Acsm4 7 119690026 to 119714565 24539 + protein coding gene acyl-CoA synthetase medium-chain family member 4
Thumpd1 7 119715093 to 119720798 5705 - protein coding gene THUMP domain containing 1
Cpgi19634 7 119720200 to 119721031 831 CpG island CpG island 19634
Tssr68751 7 119720417 to 119720425 8 + TSS region transcription start site region 68751
Tssr74498 7 119720742 to 119720803 61 - TSS region transcription start site region 74498
Gm44866 7 119720811 to 119735760 14949 - lincRNA gene predicted gene 44866
Tssr68752 7 119730735 to 119730740 5 + TSS region transcription start site region 68752
Gm39080 7 119730804 to 119739429 8625 + lncRNA gene predicted gene, 39080
Cpgi19635 7 119739830 to 119740113 283 CpG island CpG island 19635
Tssr68753 7 119739882 to 119739910 28 + TSS region transcription start site region 68753
Ppp1ccb 7 119739926 to 119742226 2300 + pseudogene protein phosphatase 1 catalytic subunit gamma B
Gm19963 7 119742856 to 119744110 1254 - pseudogene predicted gene, 19963
Cpgi19636 7 119744172 to 119744698 526 CpG island CpG island 19636
Gm44966 7 119752677 to 119752833 156 + pseudogene predicted gene 44966
Tssr74499 7 119760795 to 119760838 43 - TSS region transcription start site region 74499
Acsm3 7 119760883 to 119784896 24013 + protein coding gene acyl-CoA synthetase medium-chain family member 3
Tssr68754 7 119760918 to 119760934 16 + TSS region transcription start site region 68754
Tssr68755 7 119760943 to 119760963 20 + TSS region transcription start site region 68755
Tssr68756 7 119760981 to 119760988 7 + TSS region transcription start site region 68756
Eri2 7 119783826 to 119794058 10232 - protein coding gene exoribonuclease 2
Cpgi19637 7 119793667 to 119794610 943 CpG island CpG island 19637
Tssr68757 7 119793741 to 119793752 11 + TSS region transcription start site region 68757
Tssr74500 7 119793945 to 119793956 11 - TSS region transcription start site region 74500
Tssr74501 7 119793958 to 119793992 34 - TSS region transcription start site region 74501
Tssr68758 7 119793987 to 119794012 25 + TSS region transcription start site region 68758
Rexo5 7 119794006 to 119848943 54937 + protein coding gene RNA exonuclease 5
Tssr68759 7 119794021 to 119794045 24 + TSS region transcription start site region 68759
Tssr68760 7 119794102 to 119794157 55 + TSS region transcription start site region 68760
Tssr68761 7 119794268 to 119794294 26 + TSS region transcription start site region 68761
Dcun1d3 7 119853158 to 119896169 43011 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
Tssr68762 7 119861492 to 119861525 33 + TSS region transcription start site region 68762
Tssr74502 7 119861827 to 119861863 36 - TSS region transcription start site region 74502
Tssr2388 7 119878682 to 119878686 4 - TSS region transcription start site region 2388
Tsiq1 7 119885996 to 125542177 5656181 QTL T cell secretion of IL4 QTL 1
D7Mit66 7 119885996 to 119886157 161 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 66
Nilac4 7 119885996 to 119886157 161 QTL nicotine induced locomotor activity 4
Sst2 7 119886157 to 18994869 -100891288 QTL susceptibility to tuberculosis 2
Capsq3 7 119886157 to 87493929 -32392228 QTL capsaicin sensitivity related QTL 3
Idd27 7 119886157 to 79376386 -40509771 QTL insulin dependent diabetes susceptibility 27
Tssr74503 7 119888320 to 119888324 4 - TSS region transcription start site region 74503
Tssr74504 7 119890718 to 119890734 16 - TSS region transcription start site region 74504
Tssr74505 7 119893042 to 119893043 1 - TSS region transcription start site region 74505
Cpgi19638 7 119895322 to 119896486 1164 CpG island CpG island 19638
Tssr74506 7 119895446 to 119895462 16 - TSS region transcription start site region 74506
Tssr74507 7 119895650 to 119895659 9 - TSS region transcription start site region 74507
Tssr74508 7 119895697 to 119895752 55 - TSS region transcription start site region 74508
Lyrm1 7 119895796 to 119916756 20960 + protein coding gene LYR motif containing 1
Tssr68763 7 119895836 to 119895884 48 + TSS region transcription start site region 68763
Tssr74509 7 119896285 to 119896305 20 - TSS region transcription start site region 74509
Tssr74510 7 119896319 to 119896342 23 - TSS region transcription start site region 74510
Tssr68764 7 119896380 to 119896394 14 + TSS region transcription start site region 68764
Tssr68765 7 119896395 to 119896414 19 + TSS region transcription start site region 68765
4930456J16Rik 7 119896692 to 119898371 1679 unclassified gene RIKEN cDNA 4930456J16 gene
Tssr68766 7 119900099 to 119900102 3 + TSS region transcription start site region 68766
Dnah3 7 119922671 to 120095280 172609 - protein coding gene dynein, axonemal, heavy chain 3
Gm40455 7 119966343 to 119994747 28404 + lncRNA gene predicted gene, 40455
Gm25217 7 119969821 to 119969921 100 + snRNA gene predicted gene, 25217
Gm17986 7 120064477 to 120065026 549 - pseudogene predicted gene, 17986
Tssr74511 7 120095264 to 120095312 48 - TSS region transcription start site region 74511
Tssr74512 7 120095651 to 120095674 23 - TSS region transcription start site region 74512
Tssr74513 7 120095683 to 120095711 28 - TSS region transcription start site region 74513
Tssr68767 7 120098566 to 120098570 4 + TSS region transcription start site region 68767
4930560O18Rik 7 120101611 to 120103205 1594 - unclassified gene RIKEN cDNA 4930560O18 gene
Cpgi19639 7 120102200 to 120103292 1092 CpG island CpG island 19639
Tssr68768 7 120102347 to 120102358 11 + TSS region transcription start site region 68768
Tssr68769 7 120102367 to 120102431 64 + TSS region transcription start site region 68769
Tmem159 7 120102426 to 120120987 18561 + protein coding gene transmembrane protein 159
Tssr68770 7 120102447 to 120102464 17 + TSS region transcription start site region 68770
Tssr74514 7 120103214 to 120103225 11 - TSS region transcription start site region 74514
Tssr68771 7 120116754 to 120116763 9 + TSS region transcription start site region 68771
Zp2 7 120126772 to 120145291 18519 - protein coding gene zona pellucida glycoprotein 2
Tssr74515 7 120145286 to 120145292 6 - TSS region transcription start site region 74515
4930505K13Rik 7 120156115 to 120166000 9885 + lincRNA gene RIKEN cDNA 4930505K13 gene
Tssr68772 7 120173827 to 120173832 5 + TSS region transcription start site region 68772
Tssr68773 7 120173847 to 120173893 46 + TSS region transcription start site region 68773
Anks4b 7 120173858 to 120183716 9858 + protein coding gene ankyrin repeat and sterile alpha motif domain containing 4B
Tssr68774 7 120173902 to 120173914 12 + TSS region transcription start site region 68774
Tssr68775 7 120184508 to 120184519 11 + TSS region transcription start site region 68775
Crym 7 120186384 to 120201988 15604 - protein coding gene crystallin, mu
Tssr74516 7 120201382 to 120201406 24 - TSS region transcription start site region 74516
Tssr74517 7 120201473 to 120201500 27 - TSS region transcription start site region 74517
Cpgi19640 7 120201579 to 120202098 519 CpG island CpG island 19640
Tssr74518 7 120201950 to 120201967 17 - TSS region transcription start site region 74518
Tssr74519 7 120201971 to 120202004 33 - TSS region transcription start site region 74519
Tssr74520 7 120202007 to 120202029 22 - TSS region transcription start site region 74520
Tssr74521 7 120202104 to 120202123 19 - TSS region transcription start site region 74521
Tssr74522 7 120202139 to 120202149 10 - TSS region transcription start site region 74522
Cpgi19641 7 120203757 to 120204167 410 CpG island CpG island 19641
Tssr68776 7 120203934 to 120203943 9 + TSS region transcription start site region 68776
Tssr68777 7 120203958 to 120203968 10 + TSS region transcription start site region 68777
Abca14 7 120203961 to 120325352 121391 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 14
Tssr68778 7 120203972 to 120203985 13 + TSS region transcription start site region 68778
Tssr68779 7 120204000 to 120204013 13 + TSS region transcription start site region 68779
Tssr68780 7 120204021 to 120204022 1 + TSS region transcription start site region 68780
Cpgi19642 7 120328483 to 120328792 309 CpG island CpG island 19642
Tssr68781 7 120328660 to 120328691 31 + TSS region transcription start site region 68781
Abca15 7 120328670 to 120407687 79017 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 15
Tssr68782 7 120328693 to 120328700 7 + TSS region transcription start site region 68782
D7Mit133 7 120358247 to 120358376 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 133
Cpgi19643 7 120361327 to 120361514 187 CpG island CpG island 19643
Tssr68783 7 120409635 to 120409699 64 + TSS region transcription start site region 68783
Abca16 7 120409647 to 120544813 135166 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 16
Cpgi19644 7 120504366 to 120504722 356 CpG island CpG island 19644
Tssr68784 7 120504609 to 120504621 12 + TSS region transcription start site region 68784
Gm9165 7 120504658 to 120513772 9114 + pseudogene predicted gene 9165
Tssr68785 7 120553039 to 120553058 19 + TSS region transcription start site region 68785
Tssr68786 7 120553060 to 120553074 14 + TSS region transcription start site region 68786
Gm16475 7 120553268 to 120556777 3509 + pseudogene predicted pseudogene 16475
Gm46019 7 120579359 to 120582592 3233 + lncRNA gene predicted gene, 46019
Gm46020 7 120582601 to 120589816 7215 + lncRNA gene predicted gene, 46020
Gm4105 7 120587962 to 120588422 460 + pseudogene predicted gene 4105
Gm32916 7 120593151 to 120629769 36618 + lincRNA gene predicted gene, 32916
E130201H02Rik 7 120597625 to 120598475 850 + pseudogene RIKEN cDNA E130201H02 gene
Cpgi19645 7 120597629 to 120598210 581 CpG island CpG island 19645
Tssr68787 7 120624234 to 120624246 12 + TSS region transcription start site region 68787
Gm7226 7 120624239 to 120624574 335 + pseudogene predicted gene 7226
Gm45113 7 120624249 to 120624413 164 + pseudogene predicted gene 45113
Gm45112 7 120629762 to 120634886 5124 - unclassified gene predicted gene 45112
Cpgi19646 7 120634703 to 120635960 1257 CpG island CpG island 19646
Uqcrc2 7 120635189 to 120659523 24334 + protein coding gene ubiquinol cytochrome c reductase core protein 2
Tssr68788 7 120635200 to 120635251 51 + TSS region transcription start site region 68788
Pdzd9 7 120658731 to 120670343 11612 - protein coding gene PDZ domain containing 9
Tssr74523 7 120670222 to 120670228 6 - TSS region transcription start site region 74523
Tssr74524 7 120670239 to 120670255 16 - TSS region transcription start site region 74524
Tssr74525 7 120670256 to 120670263 7 - TSS region transcription start site region 74525
4930588G17Rik 7 120670296 to 120675902 5606 + antisense lncRNA gene RIKEN cDNA 4930588G17 gene
9030407P20Rik 7 120673436 to 120677570 4134 - unclassified non-coding RNA gene RIKEN cDNA 9030407P20 gene
Cpgi19647 7 120677187 to 120678426 1239 CpG island CpG island 19647
Tssr68789 7 120677579 to 120677630 51 + TSS region transcription start site region 68789
Mosmo 7 120677620 to 120734854 57234 + protein coding gene modulator of smoothened
Gm44661 7 120736459 to 120739961 3502 - unclassified gene predicted gene 44661
Vwa3a 7 120739318 to 120805742 66424 + protein coding gene von Willebrand factor A domain containing 3A
Tssr68790 7 120739522 to 120739544 22 + TSS region transcription start site region 68790
Tssr68791 7 120739884 to 120739908 24 + TSS region transcription start site region 68791
Tssr68792 7 120739913 to 120739925 12 + TSS region transcription start site region 68792
Tssr68793 7 120740005 to 120740036 31 + TSS region transcription start site region 68793
Tssr68794 7 120740037 to 120740051 14 + TSS region transcription start site region 68794
Tssr74526 7 120751372 to 120751375 3 - TSS region transcription start site region 74526
Tssr74527 7 120754091 to 120754135 44 - TSS region transcription start site region 74527
Cpgi19648 7 120809789 to 120810209 420 CpG island CpG island 19648
Gm5737 7 120812365 to 120831193 18828 + protein coding gene predicted gene 5737
Cpgi19649 7 120830687 to 120831471 784 CpG island CpG island 19649
n-TLtag1 7 120835479 to 120835560 81 - tRNA gene nuclear encoded tRNA leucine 1 (anticodon TAG)
Cpgi19650 7 120835527 to 120836111 584 CpG island CpG island 19650
Gm36449 7 120841127 to 120842637 1510 - lncRNA gene predicted gene, 36449
Cpgi19651 7 120842663 to 120843758 1095 CpG island CpG island 19651
Tssr68795 7 120842743 to 120842758 15 + TSS region transcription start site region 68795
Tssr68796 7 120842824 to 120842836 12 + TSS region transcription start site region 68796
Eef2k 7 120842829 to 120907219 64390 + protein coding gene eukaryotic elongation factor-2 kinase
Tssr68797 7 120842838 to 120842910 72 + TSS region transcription start site region 68797
Tssr68798 7 120842916 to 120842925 9 + TSS region transcription start site region 68798
Tssr68799 7 120843551 to 120843572 21 + TSS region transcription start site region 68799
Tssr68800 7 120851183 to 120851194 11 + TSS region transcription start site region 68800
Gm15774 7 120871391 to 120880298 8907 - antisense lncRNA gene predicted gene 15774
Tssr68801 7 120876204 to 120876227 23 + TSS region transcription start site region 68801
Tssr74528 7 120880909 to 120880911 2 - TSS region transcription start site region 74528
Gm45047 7 120890705 to 120891013 308 + unclassified gene predicted gene 45047
Cpgi19652 7 120917456 to 120918541 1085 CpG island CpG island 19652
n-TLaag4 7 120917517 to 120917598 81 + tRNA gene nuclear encoded tRNA leucine 4 (anticodon AAG)
Polr3e 7 120917744 to 120947432 29688 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide E
Tssr68802 7 120917769 to 120917815 46 + TSS region transcription start site region 68802