Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:118546257-120056707

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lskcn2 7 108883789 to 119094307 10210518 QTL LSK cell number 2
Tmc7 7 118535841 to 118584736 48895 - protein coding gene transmembrane channel-like gene family 7
Tssr74449 7 118578366 to 118578394 28 - TSS region transcription start site region 74449
Cpgi19623 7 118584284 to 118584875 591 CpG island CpG island 19623
Tssr74450 7 118584669 to 118584741 72 - TSS region transcription start site region 74450
Tssr68714 7 118592279 to 118592315 36 + TSS region transcription start site region 68714
B230311B06Rik 7 118592328 to 118596838 4510 + lincRNA gene RIKEN cDNA B230311B06 gene
Tssr68715 7 118592484 to 118592505 21 + TSS region transcription start site region 68715
Tssr68716 7 118593698 to 118593702 4 + TSS region transcription start site region 68716
Tssr68717 7 118597295 to 118597342 47 + TSS region transcription start site region 68717
Tmc5 7 118597297 to 118675086 77789 + protein coding gene transmembrane channel-like gene family 5
Cpgi19624 7 118597384 to 118597857 473 CpG island CpG island 19624
Tssr68718 7 118600152 to 118600173 21 + TSS region transcription start site region 68718
Tssr68719 7 118600178 to 118600183 5 + TSS region transcription start site region 68719
Tssr68720 7 118600194 to 118600204 10 + TSS region transcription start site region 68720
Tssr68721 7 118600208 to 118600234 26 + TSS region transcription start site region 68721
Tssr68722 7 118600236 to 118600264 28 + TSS region transcription start site region 68722
Tssr68723 7 118633729 to 118633749 20 + TSS region transcription start site region 68723
Tssr68724 7 118633752 to 118633766 14 + TSS region transcription start site region 68724
Tssr68725 7 118649147 to 118649194 47 + TSS region transcription start site region 68725
Gm45236 7 118688545 to 118688773 228 + unclassified gene predicted gene 45236
Gde1 7 118688558 to 118705738 17180 - protein coding gene glycerophosphodiester phosphodiesterase 1
Tssr74451 7 118695074 to 118695092 18 - TSS region transcription start site region 74451
Cpgi19625 7 118705075 to 118705919 844 CpG island CpG island 19625
Tssr74452 7 118705708 to 118705786 78 - TSS region transcription start site region 74452
Tssr74453 7 118707347 to 118707352 5 - TSS region transcription start site region 74453
Cpgi19626 7 118712390 to 118713049 659 CpG island CpG island 19626
Tssr68726 7 118712516 to 118712572 56 + TSS region transcription start site region 68726
Ccp110 7 118712552 to 118737024 24472 + protein coding gene centriolar coiled coil protein 110
Tssr68727 7 118712573 to 118712616 43 + TSS region transcription start site region 68727
Tssr68728 7 118712667 to 118712679 12 + TSS region transcription start site region 68728
Tssr68729 7 118731867 to 118731871 4 + TSS region transcription start site region 68729
Vps35l 7 118740197 to 118841491 101294 + protein coding gene VPS35 endosomal protein sorting factor like
Cpgi19627 7 118740380 to 118741139 759 CpG island CpG island 19627
1700016B15Rik 7 118740449 to 118741181 732 - unclassified gene RIKEN cDNA 1700016B15 gene
Tssr74454 7 118740571 to 118740613 42 - TSS region transcription start site region 74454
Tssr68730 7 118740724 to 118740754 30 + TSS region transcription start site region 68730
Tssr2384 7 118761456 to 118761463 7 - TSS region transcription start site region 2384
Gm44549 7 118768017 to 118768593 576 + sense intronic lncRNA gene predicted gene 44549
Tssr74455 7 118781298 to 118781328 30 - TSS region transcription start site region 74455
Gm44550 7 118785143 to 118787200 2057 + unclassified gene predicted gene 44550
Gm26147 7 118832565 to 118832678 113 + snoRNA gene predicted gene, 26147
Knop1 7 118842217 to 118855998 13781 - protein coding gene lysine rich nucleolar protein 1
Tssr74456 7 118850773 to 118850784 11 - TSS region transcription start site region 74456
Cpgi19628 7 118855109 to 118856379 1270 CpG island CpG island 19628
Tssr74457 7 118855649 to 118855695 46 - TSS region transcription start site region 74457
Tssr68731 7 118855735 to 118855798 63 + TSS region transcription start site region 68731
Iqck 7 118855753 to 118972652 116899 + protein coding gene IQ motif containing K
Tssr74458 7 118855951 to 118855960 9 - TSS region transcription start site region 74458
Tssr74459 7 118855974 to 118855981 7 - TSS region transcription start site region 74459
Tssr74460 7 118855984 to 118856014 30 - TSS region transcription start site region 74460
Tssr74461 7 118856017 to 118856020 3 - TSS region transcription start site region 74461
Tssr74462 7 118856033 to 118856040 7 - TSS region transcription start site region 74462
Tssr74463 7 118856361 to 118856373 12 - TSS region transcription start site region 74463
Tssr68732 7 118912617 to 118912641 24 + TSS region transcription start site region 68732
Tssr68733 7 118937076 to 118937083 7 + TSS region transcription start site region 68733
Tssr68734 7 118937120 to 118937123 3 + TSS region transcription start site region 68734
Gm44763 7 118967668 to 118969686 2018 - antisense lncRNA gene predicted gene 44763
Gprc5b 7 118972047 to 118995211 23164 - protein coding gene G protein-coupled receptor, family C, group 5, member B
Tssr74464 7 118973712 to 118973716 4 - TSS region transcription start site region 74464
Tssr74465 7 118974618 to 118974631 13 - TSS region transcription start site region 74465
Tssr2385 7 118974763 to 118974787 24 - TSS region transcription start site region 2385
Tssr74466 7 118974958 to 118974979 21 - TSS region transcription start site region 74466
Tssr74467 7 118976674 to 118976691 17 - TSS region transcription start site region 74467
Tssr74468 7 118976698 to 118976729 31 - TSS region transcription start site region 74468
Tssr74469 7 118976801 to 118976828 27 - TSS region transcription start site region 74469
Tssr74470 7 118983751 to 118983759 8 - TSS region transcription start site region 74470
Cpgi19629 7 118983928 to 118984555 627 CpG island CpG island 19629
Tssr74471 7 118984038 to 118984069 31 - TSS region transcription start site region 74471
Tssr74472 7 118984077 to 118984101 24 - TSS region transcription start site region 74472
Gm39076 7 118985040 to 118988595 3555 + lncRNA gene predicted gene, 39076
Cpgi19630 7 118993959 to 118995994 2035 CpG island CpG island 19630
Tssr74473 7 118995066 to 118995079 13 - TSS region transcription start site region 74473
Tssr74474 7 118995091 to 118995105 14 - TSS region transcription start site region 74474
Tssr74475 7 118995142 to 118995203 61 - TSS region transcription start site region 74475
Tssr74476 7 118995212 to 118995219 7 - TSS region transcription start site region 74476
D7Mit238 7 119094158 to 119094307 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 238
Vtbt4 7 119094158 to 119094307 149 QTL vertebral trabecular bone trait 4
Cfbw3 7 119094158 to 119094307 149 QTL cystic fibrosis body weight 3
Cfld4 7 119094158 to 119094307 149 QTL cystic fibrosis lung disease 4
Adbg1 7 119094158 to 144844577 25750419 QTL adult body growth 1
Bw1n 7 119094307 to 45512542 -73581765 QTL body weight 1 in NSY
Gpr139 7 119144323 to 119184374 40051 - protein coding gene G protein-coupled receptor 139
Cpgi19631 7 119184166 to 119184793 627 CpG island CpG island 19631
Tssr74477 7 119184527 to 119184546 19 - TSS region transcription start site region 74477
Tssr74478 7 119184548 to 119184572 24 - TSS region transcription start site region 74478
Tssr74479 7 119184598 to 119184619 21 - TSS region transcription start site region 74479
Cpgi19632 7 119185280 to 119185559 279 CpG island CpG island 19632
Stmm2a 7 119283163 to 119283163 0 QTL skin tumor modifier of MSM 2a
Gm4083 7 119301257 to 119301707 450 - pseudogene predicted gene 4083
Gm23321 7 119306123 to 119306248 125 - snoRNA gene predicted gene, 23321
Gp2 7 119442542 to 119459272 16730 - protein coding gene glycoprotein 2 (zymogen granule membrane)
Tssr74480 7 119459266 to 119459280 14 - TSS region transcription start site region 74480
Umod 7 119462708 to 119479262 16554 - protein coding gene uromodulin
Gm44588 7 119462821 to 119472478 9657 + antisense lncRNA gene predicted gene 44588
Tssr74481 7 119472498 to 119472509 11 - TSS region transcription start site region 74481
Cpgi19633 7 119476556 to 119477150 594 CpG island CpG island 19633
Tssr74482 7 119476798 to 119476808 10 - TSS region transcription start site region 74482
Tssr74483 7 119476811 to 119476819 8 - TSS region transcription start site region 74483
Tssr68735 7 119476943 to 119476945 2 + TSS region transcription start site region 68735
Tssr74484 7 119479169 to 119479185 16 - TSS region transcription start site region 74484
Tssr74485 7 119479249 to 119479260 11 - TSS region transcription start site region 74485
Tssr2386 7 119479366 to 119479402 36 - TSS region transcription start site region 2386
Pdilt 7 119486587 to 119523489 36902 - protein coding gene protein disulfide isomerase-like, testis expressed
Gm37518 7 119498677 to 119501279 2602 + unclassified gene predicted gene, 37518
Gm26967 7 119512000 to 119514302 2302 - sense intronic lncRNA gene predicted gene, 26967
Tssr74486 7 119523462 to 119523474 12 - TSS region transcription start site region 74486
Tssr74487 7 119523477 to 119523491 14 - TSS region transcription start site region 74487
Acsm5 7 119526131 to 119543360 17229 + protein coding gene acyl-CoA synthetase medium-chain family member 5
Tssr68736 7 119526180 to 119526200 20 + TSS region transcription start site region 68736
Tssr68737 7 119526202 to 119526218 16 + TSS region transcription start site region 68737
Tssr68738 7 119526220 to 119526264 44 + TSS region transcription start site region 68738
Tssr68739 7 119526269 to 119526300 31 + TSS region transcription start site region 68739
Tssr68740 7 119526323 to 119526334 11 + TSS region transcription start site region 68740
Acsm2 7 119554340 to 119600690 46350 + protein coding gene acyl-CoA synthetase medium-chain family member 2
Tssr68741 7 119561699 to 119561726 27 + TSS region transcription start site region 68741
Tssr68742 7 119580930 to 119580934 4 + TSS region transcription start site region 68742
Tssr68743 7 119596035 to 119596045 10 + TSS region transcription start site region 68743
Tssr68744 7 119596114 to 119596121 7 + TSS region transcription start site region 68744
Tssr68745 7 119596765 to 119596770 5 + TSS region transcription start site region 68745
Tssr2387 7 119597257 to 119597264 7 + TSS region transcription start site region 2387
Tssr74488 7 119601113 to 119601118 5 - TSS region transcription start site region 74488
Gm39078 7 119603249 to 119604834 1585 - lincRNA gene predicted gene, 39078
Tssr68746 7 119606813 to 119606837 24 + TSS region transcription start site region 68746
Tssr68747 7 119607014 to 119607029 15 + TSS region transcription start site region 68747
Gm39079 7 119610690 to 119620435 9745 - lncRNA gene predicted gene, 39079
Tssr74489 7 119615712 to 119615716 4 - TSS region transcription start site region 74489
Acsm1 7 119617763 to 119662515 44752 + protein coding gene acyl-CoA synthetase medium-chain family member 1
Tssr68748 7 119617793 to 119617802 9 + TSS region transcription start site region 68748
Tssr68749 7 119617804 to 119617819 15 + TSS region transcription start site region 68749
Tssr74490 7 119620255 to 119620337 82 - TSS region transcription start site region 74490
Tssr74491 7 119620339 to 119620362 23 - TSS region transcription start site region 74491
Tssr74492 7 119620396 to 119620400 4 - TSS region transcription start site region 74492
Gm19950 7 119626519 to 119642645 16126 - antisense lncRNA gene predicted gene, 19950
Gm45792 7 119626519 to 119631058 4539 - antisense lncRNA gene predicted gene 45792
Tssr74493 7 119627765 to 119627774 9 - TSS region transcription start site region 74493
Tssr74494 7 119631611 to 119631618 7 - TSS region transcription start site region 74494
Tssr68750 7 119640297 to 119640305 8 + TSS region transcription start site region 68750
Tssr74495 7 119642414 to 119642431 17 - TSS region transcription start site region 74495
Tssr74496 7 119642436 to 119642449 13 - TSS region transcription start site region 74496
Tssr74497 7 119642454 to 119642466 12 - TSS region transcription start site region 74497
D7Mit330 7 119656690 to 119656814 124 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 330
Acsm4 7 119690026 to 119714565 24539 + protein coding gene acyl-CoA synthetase medium-chain family member 4
Thumpd1 7 119715093 to 119720798 5705 - protein coding gene THUMP domain containing 1
Cpgi19634 7 119720200 to 119721031 831 CpG island CpG island 19634
Tssr68751 7 119720417 to 119720425 8 + TSS region transcription start site region 68751
Tssr74498 7 119720742 to 119720803 61 - TSS region transcription start site region 74498
Gm44866 7 119720811 to 119735760 14949 - lincRNA gene predicted gene 44866
Tssr68752 7 119730735 to 119730740 5 + TSS region transcription start site region 68752
Gm39080 7 119730804 to 119739429 8625 + lncRNA gene predicted gene, 39080
Cpgi19635 7 119739830 to 119740113 283 CpG island CpG island 19635
Tssr68753 7 119739882 to 119739910 28 + TSS region transcription start site region 68753
Ppp1ccb 7 119739926 to 119742226 2300 + pseudogene protein phosphatase 1 catalytic subunit gamma B
Gm19963 7 119742856 to 119744110 1254 - pseudogene predicted gene, 19963
Cpgi19636 7 119744172 to 119744698 526 CpG island CpG island 19636
Gm44966 7 119752677 to 119752833 156 + pseudogene predicted gene 44966
Tssr74499 7 119760795 to 119760838 43 - TSS region transcription start site region 74499
Acsm3 7 119760883 to 119784896 24013 + protein coding gene acyl-CoA synthetase medium-chain family member 3
Tssr68754 7 119760918 to 119760934 16 + TSS region transcription start site region 68754
Tssr68755 7 119760943 to 119760963 20 + TSS region transcription start site region 68755
Tssr68756 7 119760981 to 119760988 7 + TSS region transcription start site region 68756
Eri2 7 119783826 to 119794058 10232 - protein coding gene exoribonuclease 2
Cpgi19637 7 119793667 to 119794610 943 CpG island CpG island 19637
Tssr68757 7 119793741 to 119793752 11 + TSS region transcription start site region 68757
Tssr74500 7 119793945 to 119793956 11 - TSS region transcription start site region 74500
Tssr74501 7 119793958 to 119793992 34 - TSS region transcription start site region 74501
Tssr68758 7 119793987 to 119794012 25 + TSS region transcription start site region 68758
Rexo5 7 119794006 to 119848943 54937 + protein coding gene RNA exonuclease 5
Tssr68759 7 119794021 to 119794045 24 + TSS region transcription start site region 68759
Tssr68760 7 119794102 to 119794157 55 + TSS region transcription start site region 68760
Tssr68761 7 119794268 to 119794294 26 + TSS region transcription start site region 68761
Dcun1d3 7 119853158 to 119896169 43011 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
Tssr68762 7 119861492 to 119861525 33 + TSS region transcription start site region 68762
Tssr74502 7 119861827 to 119861863 36 - TSS region transcription start site region 74502
Tssr2388 7 119878682 to 119878686 4 - TSS region transcription start site region 2388
D7Mit66 7 119885996 to 119886157 161 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 66
Nilac4 7 119885996 to 119886157 161 QTL nicotine induced locomotor activity 4
Tsiq1 7 119885996 to 125542177 5656181 QTL T cell secretion of IL4 QTL 1
Capsq3 7 119886157 to 87493929 -32392228 QTL capsaicin sensitivity related QTL 3
Idd27 7 119886157 to 79376386 -40509771 QTL insulin dependent diabetes susceptibility 27
Sst2 7 119886157 to 18994869 -100891288 QTL susceptibility to tuberculosis 2
Tssr74503 7 119888320 to 119888324 4 - TSS region transcription start site region 74503
Tssr74504 7 119890718 to 119890734 16 - TSS region transcription start site region 74504
Tssr74505 7 119893042 to 119893043 1 - TSS region transcription start site region 74505
Cpgi19638 7 119895322 to 119896486 1164 CpG island CpG island 19638
Tssr74506 7 119895446 to 119895462 16 - TSS region transcription start site region 74506
Tssr74507 7 119895650 to 119895659 9 - TSS region transcription start site region 74507
Tssr74508 7 119895697 to 119895752 55 - TSS region transcription start site region 74508
Lyrm1 7 119895796 to 119916756 20960 + protein coding gene LYR motif containing 1
Tssr68763 7 119895836 to 119895884 48 + TSS region transcription start site region 68763
Tssr74509 7 119896285 to 119896305 20 - TSS region transcription start site region 74509
Tssr74510 7 119896319 to 119896342 23 - TSS region transcription start site region 74510
Tssr68764 7 119896380 to 119896394 14 + TSS region transcription start site region 68764
Tssr68765 7 119896395 to 119896414 19 + TSS region transcription start site region 68765
4930456J16Rik 7 119896692 to 119898371 1679 unclassified gene RIKEN cDNA 4930456J16 gene
Tssr68766 7 119900099 to 119900102 3 + TSS region transcription start site region 68766
Dnah3 7 119922671 to 120095280 172609 - protein coding gene dynein, axonemal, heavy chain 3
Gm40455 7 119966343 to 119994747 28404 + lncRNA gene predicted gene, 40455
Gm25217 7 119969821 to 119969921 100 + snRNA gene predicted gene, 25217