Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:117876734-119106767

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lskcn2 7 108883789 to 119094307 10210518 QTL LSK cell number 2
D7Mit239 7 117987004 to 117987108 104 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 239
Tssr68709 7 117998529 to 117998534 5 + TSS region transcription start site region 68709
Gm34878 7 118050560 to 118059838 9278 - lncRNA gene predicted gene, 34878
D7Mit132 7 118061804 to 118061933 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 132
Rps15a 7 118104374 to 118116147 11773 - protein coding gene ribosomal protein S15A
Tssr68710 7 118114071 to 118114113 42 + TSS region transcription start site region 68710
Cpgi19614 7 118115622 to 118116409 787 CpG island CpG island 19614
Tssr74416 7 118116146 to 118116167 21 - TSS region transcription start site region 74416
Tssr74417 7 118116171 to 118116198 27 - TSS region transcription start site region 74417
Arl6ip1 7 118118890 to 118129625 10735 - protein coding gene ADP-ribosylation factor-like 6 interacting protein 1
Tssr74418 7 118119209 to 118119250 41 - TSS region transcription start site region 74418
Tssr74419 7 118126585 to 118126591 6 - TSS region transcription start site region 74419
Tssr74420 7 118127176 to 118127229 53 - TSS region transcription start site region 74420
Tssr74421 7 118128664 to 118128670 6 - TSS region transcription start site region 74421
Cpgi19615 7 118128957 to 118130008 1051 CpG island CpG island 19615
Tssr74422 7 118129567 to 118129584 17 - TSS region transcription start site region 74422
Tssr2382 7 118129592 to 118129599 7 - TSS region transcription start site region 2382
Tssr68711 7 118129816 to 118129836 20 + TSS region transcription start site region 68711
Smg1 7 118131308 to 118243657 112349 - protein coding gene SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
Tssr74423 7 118139191 to 118139218 27 - TSS region transcription start site region 74423
Tssr74424 7 118146995 to 118147000 5 - TSS region transcription start site region 74424
Tssr74425 7 118150616 to 118150620 4 - TSS region transcription start site region 74425
Tbbr3 7 118151499 to 118151620 121 QTL Trypanosoma brucei brucei response 3
Lmr21a 7 118151499 to 128365612 10214113 QTL leishmaniasis resistance 21a
D7Mit282 7 118151499 to 118151620 121 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 282
Gm25683 7 118153480 to 118153610 130 + snoRNA gene predicted gene, 25683
Gm40454 7 118180961 to 118182367 1406 - lncRNA gene predicted gene, 40454
Tssr74426 7 118188060 to 118188073 13 - TSS region transcription start site region 74426
Tssr74427 7 118188088 to 118188118 30 - TSS region transcription start site region 74427
D7Ertd183e 7 118192563 to 118192778 215 DNA segment DNA segment, Chr 7, ERATO Doi 183, expressed
Tssr2383 7 118210622 to 118210631 9 - TSS region transcription start site region 2383
Gm45084 7 118229401 to 118231357 1956 - unclassified gene predicted gene 45084
Cpgi19616 7 118242888 to 118244387 1499 CpG island CpG island 19616
Tssr74428 7 118243362 to 118243412 50 - TSS region transcription start site region 74428
Tssr74429 7 118243525 to 118243536 11 - TSS region transcription start site region 74429
Tssr74430 7 118243564 to 118243641 77 - TSS region transcription start site region 74430
Tssr74431 7 118243669 to 118243686 17 - TSS region transcription start site region 74431
Tssr68712 7 118243860 to 118243871 11 + TSS region transcription start site region 68712
4930583K01Rik 7 118243907 to 118245551 1644 + bidirectional promoter lncRNA gene RIKEN cDNA 4930583K01 gene
Gm34999 7 118259483 to 118280424 20941 + lncRNA gene predicted gene, 34999
Gm45155 7 118273292 to 118275363 2071 - lincRNA gene predicted gene 45155
Tssr74432 7 118275381 to 118275437 56 - TSS region transcription start site region 74432
Gm23229 7 118279861 to 118279965 104 + snRNA gene predicted gene, 23229
Cpgi19617 7 118304866 to 118305064 198 CpG island CpG island 19617
Gm35083 7 118323100 to 118328648 5548 - protein coding gene predicted gene, 35083
Tssr74433 7 118326909 to 118326926 17 - TSS region transcription start site region 74433
Tssr68713 7 118329453 to 118329465 12 + TSS region transcription start site region 68713
Gm35309 7 118329486 to 118330121 635 + lincRNA gene predicted gene, 35309
Gm32766 7 118358170 to 118370075 11905 - protein coding gene predicted gene, 32766
Syt17 7 118380717 to 118448222 67505 - protein coding gene synaptotagmin XVII
D7Mit7 7 118394038 to 118394119 81 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 7
Fembm3 7 118394038 to 118394119 81 QTL femoral bone morphometry 3
Cpgi19618 7 118434111 to 118434605 494 CpG island CpG island 19618
Tssr74434 7 118443527 to 118443545 18 - TSS region transcription start site region 74434
Tssr74435 7 118443549 to 118443571 22 - TSS region transcription start site region 74435
Cpgi19619 7 118447315 to 118448996 1681 CpG island CpG island 19619
Tssr74436 7 118447920 to 118447948 28 - TSS region transcription start site region 74436
Tssr74437 7 118448172 to 118448227 55 - TSS region transcription start site region 74437
D7Mit1002 7 118457886 to 118458012 126 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 1002
D7Mit100 7 118465450 to 118465652 202 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 100
Gm44652 7 118480495 to 118483348 2853 + unclassified gene predicted gene 44652
Itpripl2 7 118485111 to 118491975 6864 - protein coding gene inositol 1,4,5-triphosphate receptor interacting protein-like 2
Tssr74438 7 118485642 to 118485657 15 - TSS region transcription start site region 74438
Tssr74439 7 118487536 to 118487566 30 - TSS region transcription start site region 74439
Tssr74440 7 118488253 to 118488288 35 - TSS region transcription start site region 74440
Cpgi19620 7 118489735 to 118492231 2496 CpG island CpG island 19620
Tssr74441 7 118491466 to 118491516 50 - TSS region transcription start site region 74441
Tssr74442 7 118491734 to 118491767 33 - TSS region transcription start site region 74442
Tssr74443 7 118491809 to 118491868 59 - TSS region transcription start site region 74443
Tssr74444 7 118491879 to 118491903 24 - TSS region transcription start site region 74444
Tssr74445 7 118491912 to 118491965 53 - TSS region transcription start site region 74445
Coq7 7 118509659 to 118533356 23697 - protein coding gene demethyl-Q 7
Cpgi19621 7 118518681 to 118519063 382 CpG island CpG island 19621
Cpgi19622 7 118532810 to 118533555 745 CpG island CpG island 19622
Tssr74446 7 118533269 to 118533274 5 - TSS region transcription start site region 74446
Tssr74447 7 118533298 to 118533333 35 - TSS region transcription start site region 74447
Tmc7 7 118535841 to 118584736 48895 - protein coding gene transmembrane channel-like gene family 7
Tssr74448 7 118537856 to 118537861 5 - TSS region transcription start site region 74448
Tssr74449 7 118578366 to 118578394 28 - TSS region transcription start site region 74449
Cpgi19623 7 118584284 to 118584875 591 CpG island CpG island 19623
Tssr74450 7 118584669 to 118584741 72 - TSS region transcription start site region 74450
Tssr68714 7 118592279 to 118592315 36 + TSS region transcription start site region 68714
B230311B06Rik 7 118592328 to 118596838 4510 + lincRNA gene RIKEN cDNA B230311B06 gene
Tssr68715 7 118592484 to 118592505 21 + TSS region transcription start site region 68715
Tssr68716 7 118593698 to 118593702 4 + TSS region transcription start site region 68716
Tssr68717 7 118597295 to 118597342 47 + TSS region transcription start site region 68717
Tmc5 7 118597297 to 118675086 77789 + protein coding gene transmembrane channel-like gene family 5
Cpgi19624 7 118597384 to 118597857 473 CpG island CpG island 19624
Tssr68718 7 118600152 to 118600173 21 + TSS region transcription start site region 68718
Tssr68719 7 118600178 to 118600183 5 + TSS region transcription start site region 68719
Tssr68720 7 118600194 to 118600204 10 + TSS region transcription start site region 68720
Tssr68721 7 118600208 to 118600234 26 + TSS region transcription start site region 68721
Tssr68722 7 118600236 to 118600264 28 + TSS region transcription start site region 68722
Tssr68723 7 118633729 to 118633749 20 + TSS region transcription start site region 68723
Tssr68724 7 118633752 to 118633766 14 + TSS region transcription start site region 68724
Tssr68725 7 118649147 to 118649194 47 + TSS region transcription start site region 68725
Gm45236 7 118688545 to 118688773 228 + unclassified gene predicted gene 45236
Gde1 7 118688558 to 118705738 17180 - protein coding gene glycerophosphodiester phosphodiesterase 1
Tssr74451 7 118695074 to 118695092 18 - TSS region transcription start site region 74451
Cpgi19625 7 118705075 to 118705919 844 CpG island CpG island 19625
Tssr74452 7 118705708 to 118705786 78 - TSS region transcription start site region 74452
Tssr74453 7 118707347 to 118707352 5 - TSS region transcription start site region 74453
Cpgi19626 7 118712390 to 118713049 659 CpG island CpG island 19626
Tssr68726 7 118712516 to 118712572 56 + TSS region transcription start site region 68726
Ccp110 7 118712552 to 118737024 24472 + protein coding gene centriolar coiled coil protein 110
Tssr68727 7 118712573 to 118712616 43 + TSS region transcription start site region 68727
Tssr68728 7 118712667 to 118712679 12 + TSS region transcription start site region 68728
Tssr68729 7 118731867 to 118731871 4 + TSS region transcription start site region 68729
Vps35l 7 118740197 to 118841491 101294 + protein coding gene VPS35 endosomal protein sorting factor like
Cpgi19627 7 118740380 to 118741139 759 CpG island CpG island 19627
1700016B15Rik 7 118740449 to 118741181 732 - unclassified gene RIKEN cDNA 1700016B15 gene
Tssr74454 7 118740571 to 118740613 42 - TSS region transcription start site region 74454
Tssr68730 7 118740724 to 118740754 30 + TSS region transcription start site region 68730
Tssr2384 7 118761456 to 118761463 7 - TSS region transcription start site region 2384
Gm44549 7 118768017 to 118768593 576 + sense intronic lncRNA gene predicted gene 44549
Tssr74455 7 118781298 to 118781328 30 - TSS region transcription start site region 74455
Gm44550 7 118785143 to 118787200 2057 + unclassified gene predicted gene 44550
Gm26147 7 118832565 to 118832678 113 + snoRNA gene predicted gene, 26147
Knop1 7 118842217 to 118855998 13781 - protein coding gene lysine rich nucleolar protein 1
Tssr74456 7 118850773 to 118850784 11 - TSS region transcription start site region 74456
Cpgi19628 7 118855109 to 118856379 1270 CpG island CpG island 19628
Tssr74457 7 118855649 to 118855695 46 - TSS region transcription start site region 74457
Tssr68731 7 118855735 to 118855798 63 + TSS region transcription start site region 68731
Iqck 7 118855753 to 118972652 116899 + protein coding gene IQ motif containing K
Tssr74458 7 118855951 to 118855960 9 - TSS region transcription start site region 74458
Tssr74459 7 118855974 to 118855981 7 - TSS region transcription start site region 74459
Tssr74460 7 118855984 to 118856014 30 - TSS region transcription start site region 74460
Tssr74461 7 118856017 to 118856020 3 - TSS region transcription start site region 74461
Tssr74462 7 118856033 to 118856040 7 - TSS region transcription start site region 74462
Tssr74463 7 118856361 to 118856373 12 - TSS region transcription start site region 74463
Tssr68732 7 118912617 to 118912641 24 + TSS region transcription start site region 68732
Tssr68733 7 118937076 to 118937083 7 + TSS region transcription start site region 68733
Tssr68734 7 118937120 to 118937123 3 + TSS region transcription start site region 68734
Gm44763 7 118967668 to 118969686 2018 - antisense lncRNA gene predicted gene 44763
Gprc5b 7 118972047 to 118995211 23164 - protein coding gene G protein-coupled receptor, family C, group 5, member B
Tssr74464 7 118973712 to 118973716 4 - TSS region transcription start site region 74464
Tssr74465 7 118974618 to 118974631 13 - TSS region transcription start site region 74465
Tssr2385 7 118974763 to 118974787 24 - TSS region transcription start site region 2385
Tssr74466 7 118974958 to 118974979 21 - TSS region transcription start site region 74466
Tssr74467 7 118976674 to 118976691 17 - TSS region transcription start site region 74467
Tssr74468 7 118976698 to 118976729 31 - TSS region transcription start site region 74468
Tssr74469 7 118976801 to 118976828 27 - TSS region transcription start site region 74469
Tssr74470 7 118983751 to 118983759 8 - TSS region transcription start site region 74470
Cpgi19629 7 118983928 to 118984555 627 CpG island CpG island 19629
Tssr74471 7 118984038 to 118984069 31 - TSS region transcription start site region 74471
Tssr74472 7 118984077 to 118984101 24 - TSS region transcription start site region 74472
Gm39076 7 118985040 to 118988595 3555 + lncRNA gene predicted gene, 39076
Cpgi19630 7 118993959 to 118995994 2035 CpG island CpG island 19630
Tssr74473 7 118995066 to 118995079 13 - TSS region transcription start site region 74473
Tssr74474 7 118995091 to 118995105 14 - TSS region transcription start site region 74474
Tssr74475 7 118995142 to 118995203 61 - TSS region transcription start site region 74475
Tssr74476 7 118995212 to 118995219 7 - TSS region transcription start site region 74476
Vtbt4 7 119094158 to 119094307 149 QTL vertebral trabecular bone trait 4
Cfbw3 7 119094158 to 119094307 149 QTL cystic fibrosis body weight 3
Cfld4 7 119094158 to 119094307 149 QTL cystic fibrosis lung disease 4
D7Mit238 7 119094158 to 119094307 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 238
Adbg1 7 119094158 to 144844577 25750419 QTL adult body growth 1
Bw1n 7 119094307 to 45512542 -73581765 QTL body weight 1 in NSY