Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:116422881-116900163

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pik3c2a 7 116337265 to 116443449 106184 - protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
Gm40453 7 116434781 to 116436926 2145 + protein coding gene predicted gene, 40453
Cpgi19610 7 116442952 to 116444156 1204 CpG island CpG island 19610
Tssr74406 7 116443400 to 116443411 11 - TSS region transcription start site region 74406
Tssr74407 7 116443412 to 116443436 24 - TSS region transcription start site region 74407
Tssr74408 7 116443439 to 116443462 23 - TSS region transcription start site region 74408
Tssr68691 7 116443569 to 116443593 24 + TSS region transcription start site region 68691
AV356131 7 116443575 to 116444324 749 + bidirectional promoter lncRNA gene expressed sequence AV356131
Tssr74409 7 116444590 to 116444601 11 - TSS region transcription start site region 74409
Tssr74410 7 116458956 to 116458961 5 - TSS region transcription start site region 74410
Gm32676 7 116491942 to 116492407 465 - pseudogene predicted gene, 32676
Gm45031 7 116492117 to 116492404 287 - pseudogene predicted gene 45031
Cpgi19611 7 116503980 to 116504808 828 CpG island CpG island 19611
Tssr68692 7 116504363 to 116504397 34 + TSS region transcription start site region 68692
Nucb2 7 116504369 to 116540584 36215 + protein coding gene nucleobindin 2
Tssr68693 7 116504409 to 116504430 21 + TSS region transcription start site region 68693
Tssr68694 7 116504437 to 116504452 15 + TSS region transcription start site region 68694
Gm45151 7 116543656 to 116545755 2099 + lincRNA gene predicted gene 45151
4732496C06Rik 7 116546865 to 116549364 2499 + lincRNA gene RIKEN cDNA 4732496C06 gene
Tssr68695 7 116546897 to 116546900 3 + TSS region transcription start site region 68695
Gm9197 7 116598054 to 116598504 450 - pseudogene predicted gene 9197
Tssr68696 7 116604052 to 116604053 1 + TSS region transcription start site region 68696
n-R5s157 7 116625122 to 116625242 120 - rRNA gene nuclear encoded rRNA 5S 157
Gm46018 7 116657881 to 116665163 7282 + lncRNA gene predicted gene, 46018
Tssr68697 7 116665733 to 116665736 3 + TSS region transcription start site region 68697
Gm25423 7 116691379 to 116691485 106 - snRNA gene predicted gene, 25423
Cpgi19612 7 116701095 to 116701283 188 CpG island CpG island 19612
Gm39074 7 116717679 to 116726131 8452 + lncRNA gene predicted gene, 39074
Gm45948 7 116726279 to 116732315 6036 + lncRNA gene predicted gene, 45948
Gm6008 7 116803624 to 116804464 840 - pseudogene predicted gene 6008
D7Mit40 7 116817442 to 116817642 200 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 40
Bbaa16 7 116817642 to 36580590 -80237052 QTL B.burgdorferi-associated arthritis 16
Gm4366 7 116824510 to 116825851 1341 - pseudogene predicted gene 4366
Tssr74411 7 116825842 to 116825847 5 - TSS region transcription start site region 74411