Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:116398481-118078481

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pik3c2a 7 116337265 to 116443449 106184 - protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
Gm45033 7 116396551 to 116399717 3166 - unclassified gene predicted gene 45033
Tssr74405 7 116402985 to 116403020 35 - TSS region transcription start site region 74405
C430039J01Rik 7 116409847 to 116410803 956 - unclassified gene RIKEN cDNA C430039J01 gene
Gm40453 7 116434781 to 116436926 2145 + protein coding gene predicted gene, 40453
Cpgi19610 7 116442952 to 116444156 1204 CpG island CpG island 19610
Tssr74406 7 116443400 to 116443411 11 - TSS region transcription start site region 74406
Tssr74407 7 116443412 to 116443436 24 - TSS region transcription start site region 74407
Tssr74408 7 116443439 to 116443462 23 - TSS region transcription start site region 74408
Tssr68691 7 116443569 to 116443593 24 + TSS region transcription start site region 68691
AV356131 7 116443575 to 116444324 749 + bidirectional promoter lncRNA gene expressed sequence AV356131
Tssr74409 7 116444590 to 116444601 11 - TSS region transcription start site region 74409
Tssr74410 7 116458956 to 116458961 5 - TSS region transcription start site region 74410
Gm32676 7 116491942 to 116492407 465 - pseudogene predicted gene, 32676
Gm45031 7 116492117 to 116492404 287 - pseudogene predicted gene 45031
Cpgi19611 7 116503980 to 116504808 828 CpG island CpG island 19611
Tssr68692 7 116504363 to 116504397 34 + TSS region transcription start site region 68692
Nucb2 7 116504369 to 116540584 36215 + protein coding gene nucleobindin 2
Tssr68693 7 116504409 to 116504430 21 + TSS region transcription start site region 68693
Tssr68694 7 116504437 to 116504452 15 + TSS region transcription start site region 68694
Gm45151 7 116543656 to 116545755 2099 + lincRNA gene predicted gene 45151
4732496C06Rik 7 116546865 to 116549364 2499 + lincRNA gene RIKEN cDNA 4732496C06 gene
Tssr68695 7 116546897 to 116546900 3 + TSS region transcription start site region 68695
Gm9197 7 116598054 to 116598504 450 - pseudogene predicted gene 9197
Tssr68696 7 116604052 to 116604053 1 + TSS region transcription start site region 68696
n-R5s157 7 116625122 to 116625242 120 - rRNA gene nuclear encoded rRNA 5S 157
Gm46018 7 116657881 to 116665163 7282 + lncRNA gene predicted gene, 46018
Tssr68697 7 116665733 to 116665736 3 + TSS region transcription start site region 68697
Gm25423 7 116691379 to 116691485 106 - snRNA gene predicted gene, 25423
Cpgi19612 7 116701095 to 116701283 188 CpG island CpG island 19612
Gm39074 7 116717679 to 116726131 8452 + lncRNA gene predicted gene, 39074
Gm45948 7 116726279 to 116732315 6036 + lncRNA gene predicted gene, 45948
Gm6008 7 116803624 to 116804464 840 - pseudogene predicted gene 6008
D7Mit40 7 116817442 to 116817642 200 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 40
Bbaa16 7 116817642 to 36580590 -80237052 QTL B.burgdorferi-associated arthritis 16
Gm4366 7 116824510 to 116825851 1341 - pseudogene predicted gene 4366
Tssr74411 7 116825842 to 116825847 5 - TSS region transcription start site region 74411
Gm26054 7 116952589 to 116952695 106 - snRNA gene predicted gene, 26054
D7Mit64 7 117208801 to 117208927 126 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 64
Gm39075 7 117229607 to 117278839 49232 + lincRNA gene predicted gene, 39075
Tons2 7 117238481 to 117238481 0 QTL tongue size 2
Irm1 7 117238481 to 135128325 17889844 QTL inflammatory response modulator 1
Tssr68698 7 117380018 to 117380030 12 + TSS region transcription start site region 68698
Cpgi19613 7 117380313 to 117382019 1706 CpG island CpG island 19613
Tssr68699 7 117380937 to 117380992 55 + TSS region transcription start site region 68699
Xylt1 7 117380979 to 117667630 286651 + protein coding gene xylosyltransferase 1
Tssr68700 7 117380996 to 117381014 18 + TSS region transcription start site region 68700
Gm45153 7 117381862 to 117383762 1900 + unclassified gene predicted gene 45153
Tssr68701 7 117390031 to 117390066 35 + TSS region transcription start site region 68701
Tssr68702 7 117390135 to 117390147 12 + TSS region transcription start site region 68702
Tssr68703 7 117411434 to 117411467 33 + TSS region transcription start site region 68703
Tssr2381 7 117449737 to 117449767 30 - TSS region transcription start site region 2381
Tssr74412 7 117470268 to 117470287 19 - TSS region transcription start site region 74412
Tssr74413 7 117475164 to 117475196 32 - TSS region transcription start site region 74413
Tssr68704 7 117485533 to 117485538 5 + TSS region transcription start site region 68704
Tssr74414 7 117486496 to 117486522 26 - TSS region transcription start site region 74414
Tssr74415 7 117486545 to 117486556 11 - TSS region transcription start site region 74415
Tssr68705 7 117486707 to 117486754 47 + TSS region transcription start site region 68705
Tssr68706 7 117568473 to 117568529 56 + TSS region transcription start site region 68706
Tssr68707 7 117604468 to 117604472 4 + TSS region transcription start site region 68707
Tssr68708 7 117670618 to 117670642 24 + TSS region transcription start site region 68708
Gm34762 7 117719378 to 117759196 39818 - lncRNA gene predicted gene, 34762
D7Mit329 7 117748872 to 117748996 124 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 329
Gm24063 7 117776794 to 117776898 104 + miRNA gene predicted gene, 24063
Gm34822 7 117849939 to 117851343 1404 - lncRNA gene predicted gene, 34822
D7Mit239 7 117987004 to 117987108 104 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 239
Tssr68709 7 117998529 to 117998534 5 + TSS region transcription start site region 68709
Gm34878 7 118050560 to 118059838 9278 - lncRNA gene predicted gene, 34878
D7Mit132 7 118061804 to 118061933 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 132