Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:116278054-116918504

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plekha7 7 116123485 to 116308376 184891 - protein coding gene pleckstrin homology domain containing, family A member 7
Gm44867 7 116281511 to 116282885 1374 - sense intronic lncRNA gene predicted gene 44867
Tssr74401 7 116290560 to 116290602 42 - TSS region transcription start site region 74401
Cpgi19608 7 116307079 to 116308771 1692 CpG island CpG island 19608
Tssr74402 7 116308334 to 116308362 28 - TSS region transcription start site region 74402
Rps13 7 116331507 to 116334190 2683 - protein coding gene ribosomal protein S13
Snord14a 7 116333171 to 116333257 86 - snoRNA gene small nucleolar RNA, C/D box 14A
Cpgi19609 7 116333636 to 116334707 1071 CpG island CpG island 19609
Tssr74403 7 116334132 to 116334188 56 - TSS region transcription start site region 74403
Gm10589 7 116334236 to 116348181 13945 + lncRNA gene predicted gene 10589
Tssr68690 7 116334244 to 116334268 24 + TSS region transcription start site region 68690
Gm44777 7 116334255 to 116338633 4378 + antisense lncRNA gene predicted gene 44777
Pik3c2a 7 116337265 to 116443449 106184 - protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
Tssr74404 7 116381685 to 116381689 4 - TSS region transcription start site region 74404
Gm45033 7 116396551 to 116399717 3166 - unclassified gene predicted gene 45033
Tssr74405 7 116402985 to 116403020 35 - TSS region transcription start site region 74405
C430039J01Rik 7 116409847 to 116410803 956 - unclassified gene RIKEN cDNA C430039J01 gene
Gm40453 7 116434781 to 116436926 2145 + protein coding gene predicted gene, 40453
Cpgi19610 7 116442952 to 116444156 1204 CpG island CpG island 19610
Tssr74406 7 116443400 to 116443411 11 - TSS region transcription start site region 74406
Tssr74407 7 116443412 to 116443436 24 - TSS region transcription start site region 74407
Tssr74408 7 116443439 to 116443462 23 - TSS region transcription start site region 74408
Tssr68691 7 116443569 to 116443593 24 + TSS region transcription start site region 68691
AV356131 7 116443575 to 116444324 749 + bidirectional promoter lncRNA gene expressed sequence AV356131
Tssr74409 7 116444590 to 116444601 11 - TSS region transcription start site region 74409
Tssr74410 7 116458956 to 116458961 5 - TSS region transcription start site region 74410
Gm32676 7 116491942 to 116492407 465 - pseudogene predicted gene, 32676
Gm45031 7 116492117 to 116492404 287 - pseudogene predicted gene 45031
Cpgi19611 7 116503980 to 116504808 828 CpG island CpG island 19611
Tssr68692 7 116504363 to 116504397 34 + TSS region transcription start site region 68692
Nucb2 7 116504369 to 116540584 36215 + protein coding gene nucleobindin 2
Tssr68693 7 116504409 to 116504430 21 + TSS region transcription start site region 68693
Tssr68694 7 116504437 to 116504452 15 + TSS region transcription start site region 68694
Gm45151 7 116543656 to 116545755 2099 + lincRNA gene predicted gene 45151
4732496C06Rik 7 116546865 to 116549364 2499 + lincRNA gene RIKEN cDNA 4732496C06 gene
Tssr68695 7 116546897 to 116546900 3 + TSS region transcription start site region 68695
Gm9197 7 116598054 to 116598504 450 - pseudogene predicted gene 9197
Tssr68696 7 116604052 to 116604053 1 + TSS region transcription start site region 68696
n-R5s157 7 116625122 to 116625242 120 - rRNA gene nuclear encoded rRNA 5S 157
Gm46018 7 116657881 to 116665163 7282 + lncRNA gene predicted gene, 46018
Tssr68697 7 116665733 to 116665736 3 + TSS region transcription start site region 68697
Gm25423 7 116691379 to 116691485 106 - snRNA gene predicted gene, 25423
Cpgi19612 7 116701095 to 116701283 188 CpG island CpG island 19612
Gm39074 7 116717679 to 116726131 8452 + lncRNA gene predicted gene, 39074
Gm45948 7 116726279 to 116732315 6036 + lncRNA gene predicted gene, 45948
Gm6008 7 116803624 to 116804464 840 - pseudogene predicted gene 6008
D7Mit40 7 116817442 to 116817642 200 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 40
Bbaa16 7 116817642 to 36580590 -80237052 QTL B.burgdorferi-associated arthritis 16
Gm4366 7 116824510 to 116825851 1341 - pseudogene predicted gene 4366
Tssr74411 7 116825842 to 116825847 5 - TSS region transcription start site region 74411