Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:115531865-117564364

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox6 7 115470872 to 116038796 567924 - protein coding gene SRY (sex determining region Y)-box 6
Tssr74359 7 115550575 to 115550601 26 - TSS region transcription start site region 74359
D7Mit253.1 7 115565540 to 115565649 109 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 253.1
D7Dcr48 7 115565680 to 115565778 98 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 48
Eae26 7 115565687 to 115565775 88 QTL experimental allergic encephalomyelitis susceptibility 26
D7Mit253 7 115565687 to 115565775 88 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 253
Tssr74360 7 115597891 to 115597928 37 - TSS region transcription start site region 74360
Tssr74361 7 115664054 to 115664058 4 - TSS region transcription start site region 74361
Tssr74362 7 115697188 to 115697220 32 - TSS region transcription start site region 74362
Tssr74363 7 115698184 to 115698206 22 - TSS region transcription start site region 74363
Tssr74364 7 115722738 to 115722741 3 - TSS region transcription start site region 74364
Tssr74365 7 115725006 to 115725009 3 - TSS region transcription start site region 74365
Tssr74366 7 115737934 to 115737936 2 - TSS region transcription start site region 74366
Asrq7 7 115795739 to 115795739 0 QTL acoustic startle response 7
Tssr74367 7 115824699 to 115824752 53 - TSS region transcription start site region 74367
Tssr74368 7 115841620 to 115841624 4 - TSS region transcription start site region 74368
D7Mit237 7 115842797 to 115842920 123 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 237
Tssr74369 7 115846080 to 115846112 32 - TSS region transcription start site region 74369
Tssr74370 7 115846118 to 115846154 36 - TSS region transcription start site region 74370
Tssr74371 7 115846158 to 115846159 1 - TSS region transcription start site region 74371
Tssr74372 7 115846162 to 115846173 11 - TSS region transcription start site region 74372
Tssr74373 7 115859820 to 115859846 26 - TSS region transcription start site region 74373
Tssr74374 7 115859847 to 115859864 17 - TSS region transcription start site region 74374
Mdq11 7 115893951 to 115893951 0 QTL mammary ductal QTL 11
Tssr74375 7 115953298 to 115953328 30 - TSS region transcription start site region 74375
Tssr74376 7 115953345 to 115953355 10 - TSS region transcription start site region 74376
Tssr68685 7 115995266 to 115995286 20 + TSS region transcription start site region 68685
Gm45025 7 115995274 to 116014145 18871 + antisense lncRNA gene predicted gene 45025
Tssr74377 7 116030971 to 116031000 29 - TSS region transcription start site region 74377
Tssr74378 7 116031092 to 116031122 30 - TSS region transcription start site region 74378
Cpgi19603 7 116031298 to 116032524 1226 CpG island CpG island 19603
Tssr68686 7 116031920 to 116031932 12 + TSS region transcription start site region 68686
Sox6os 7 116031979 to 116032550 571 + antisense lncRNA gene SRY (sex determining region Y)-box 6, opposite strand
Tssr68687 7 116031996 to 116032009 13 + TSS region transcription start site region 68687
Cpgi19604 7 116033464 to 116034792 1328 CpG island CpG island 19604
Tssr74379 7 116033606 to 116033624 18 - TSS region transcription start site region 74379
Tssr74380 7 116033811 to 116033822 11 - TSS region transcription start site region 74380
Tssr74381 7 116033863 to 116033895 32 - TSS region transcription start site region 74381
Tssr74382 7 116034309 to 116034338 29 - TSS region transcription start site region 74382
Tssr74383 7 116034390 to 116034417 27 - TSS region transcription start site region 74383
Tssr74384 7 116034463 to 116034543 80 - TSS region transcription start site region 74384
Tssr74385 7 116034597 to 116034619 22 - TSS region transcription start site region 74385
Tssr74386 7 116038734 to 116038750 16 - TSS region transcription start site region 74386
Tssr74387 7 116038804 to 116038818 14 - TSS region transcription start site region 74387
Cpgi19605 7 116039427 to 116040499 1072 CpG island CpG island 19605
Tssr74388 7 116039564 to 116039577 13 - TSS region transcription start site region 74388
1700003G18Rik 7 116081762 to 116093149 11387 - lncRNA gene RIKEN cDNA 1700003G18 gene
Gm4353 7 116082863 to 116084633 1770 - pseudogene predicted gene 4353
Cpgi19606 7 116093006 to 116093734 728 CpG island CpG island 19606
Tssr74389 7 116093119 to 116093165 46 - TSS region transcription start site region 74389
Tssr68688 7 116093296 to 116093329 33 + TSS region transcription start site region 68688
Tssr74390 7 116093311 to 116093320 9 - TSS region transcription start site region 74390
Tssr68689 7 116093339 to 116093372 33 + TSS region transcription start site region 68689
1110004F10Rik 7 116093380 to 116105210 11830 + protein coding gene RIKEN cDNA 1110004F10 gene
Plekha7 7 116123485 to 116308376 184891 - protein coding gene pleckstrin homology domain containing, family A member 7
Tssr74391 7 116198487 to 116198517 30 - TSS region transcription start site region 74391
Tssr74392 7 116202356 to 116202360 4 - TSS region transcription start site region 74392
Cpgi19607 7 116236976 to 116238048 1072 CpG island CpG island 19607
Tssr74393 7 116237615 to 116237630 15 - TSS region transcription start site region 74393
Tssr74394 7 116237643 to 116237661 18 - TSS region transcription start site region 74394
Tssr74395 7 116237767 to 116237781 14 - TSS region transcription start site region 74395
Tssr74396 7 116237800 to 116237821 21 - TSS region transcription start site region 74396
Tssr74397 7 116238384 to 116238392 8 - TSS region transcription start site region 74397
Tssr74398 7 116238412 to 116238427 15 - TSS region transcription start site region 74398
Tssr74399 7 116264255 to 116264265 10 - TSS region transcription start site region 74399
Tssr74400 7 116264274 to 116264280 6 - TSS region transcription start site region 74400
Gm44867 7 116281511 to 116282885 1374 - sense intronic lncRNA gene predicted gene 44867
Tssr74401 7 116290560 to 116290602 42 - TSS region transcription start site region 74401
Cpgi19608 7 116307079 to 116308771 1692 CpG island CpG island 19608
Tssr74402 7 116308334 to 116308362 28 - TSS region transcription start site region 74402
Rps13 7 116331507 to 116334190 2683 - protein coding gene ribosomal protein S13
Snord14a 7 116333171 to 116333257 86 - snoRNA gene small nucleolar RNA, C/D box 14A
Cpgi19609 7 116333636 to 116334707 1071 CpG island CpG island 19609
Tssr74403 7 116334132 to 116334188 56 - TSS region transcription start site region 74403
Gm10589 7 116334236 to 116348181 13945 + lncRNA gene predicted gene 10589
Tssr68690 7 116334244 to 116334268 24 + TSS region transcription start site region 68690
Gm44777 7 116334255 to 116338633 4378 + antisense lncRNA gene predicted gene 44777
Pik3c2a 7 116337265 to 116443449 106184 - protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
Tssr74404 7 116381685 to 116381689 4 - TSS region transcription start site region 74404
Gm45033 7 116396551 to 116399717 3166 - unclassified gene predicted gene 45033
Tssr74405 7 116402985 to 116403020 35 - TSS region transcription start site region 74405
C430039J01Rik 7 116409847 to 116410803 956 - unclassified gene RIKEN cDNA C430039J01 gene
Gm40453 7 116434781 to 116436926 2145 + protein coding gene predicted gene, 40453
Cpgi19610 7 116442952 to 116444156 1204 CpG island CpG island 19610
Tssr74406 7 116443400 to 116443411 11 - TSS region transcription start site region 74406
Tssr74407 7 116443412 to 116443436 24 - TSS region transcription start site region 74407
Tssr74408 7 116443439 to 116443462 23 - TSS region transcription start site region 74408
Tssr68691 7 116443569 to 116443593 24 + TSS region transcription start site region 68691
AV356131 7 116443575 to 116444324 749 + bidirectional promoter lncRNA gene expressed sequence AV356131
Tssr74409 7 116444590 to 116444601 11 - TSS region transcription start site region 74409
Tssr74410 7 116458956 to 116458961 5 - TSS region transcription start site region 74410
Gm32676 7 116491942 to 116492407 465 - pseudogene predicted gene, 32676
Gm45031 7 116492117 to 116492404 287 - pseudogene predicted gene 45031
Cpgi19611 7 116503980 to 116504808 828 CpG island CpG island 19611
Tssr68692 7 116504363 to 116504397 34 + TSS region transcription start site region 68692
Nucb2 7 116504369 to 116540584 36215 + protein coding gene nucleobindin 2
Tssr68693 7 116504409 to 116504430 21 + TSS region transcription start site region 68693
Tssr68694 7 116504437 to 116504452 15 + TSS region transcription start site region 68694
Gm45151 7 116543656 to 116545755 2099 + lincRNA gene predicted gene 45151
4732496C06Rik 7 116546865 to 116549364 2499 + lincRNA gene RIKEN cDNA 4732496C06 gene
Tssr68695 7 116546897 to 116546900 3 + TSS region transcription start site region 68695
Gm9197 7 116598054 to 116598504 450 - pseudogene predicted gene 9197
Tssr68696 7 116604052 to 116604053 1 + TSS region transcription start site region 68696
n-R5s157 7 116625122 to 116625242 120 - rRNA gene nuclear encoded rRNA 5S 157
Gm46018 7 116657881 to 116665163 7282 + lncRNA gene predicted gene, 46018
Tssr68697 7 116665733 to 116665736 3 + TSS region transcription start site region 68697
Gm25423 7 116691379 to 116691485 106 - snRNA gene predicted gene, 25423
Cpgi19612 7 116701095 to 116701283 188 CpG island CpG island 19612
Gm39074 7 116717679 to 116726131 8452 + lncRNA gene predicted gene, 39074
Gm45948 7 116726279 to 116732315 6036 + lncRNA gene predicted gene, 45948
Gm6008 7 116803624 to 116804464 840 - pseudogene predicted gene 6008
D7Mit40 7 116817442 to 116817642 200 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 40
Bbaa16 7 116817642 to 36580590 -80237052 QTL B.burgdorferi-associated arthritis 16
Gm4366 7 116824510 to 116825851 1341 - pseudogene predicted gene 4366
Tssr74411 7 116825842 to 116825847 5 - TSS region transcription start site region 74411
Gm26054 7 116952589 to 116952695 106 - snRNA gene predicted gene, 26054
D7Mit64 7 117208801 to 117208927 126 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 64
Gm39075 7 117229607 to 117278839 49232 + lincRNA gene predicted gene, 39075
Irm1 7 117238481 to 135128325 17889844 QTL inflammatory response modulator 1
Tons2 7 117238481 to 117238481 0 QTL tongue size 2
Tssr68698 7 117380018 to 117380030 12 + TSS region transcription start site region 68698
Cpgi19613 7 117380313 to 117382019 1706 CpG island CpG island 19613
Tssr68699 7 117380937 to 117380992 55 + TSS region transcription start site region 68699
Xylt1 7 117380979 to 117667630 286651 + protein coding gene xylosyltransferase 1
Tssr68700 7 117380996 to 117381014 18 + TSS region transcription start site region 68700
Gm45153 7 117381862 to 117383762 1900 + unclassified gene predicted gene 45153
Tssr68701 7 117390031 to 117390066 35 + TSS region transcription start site region 68701
Tssr68702 7 117390135 to 117390147 12 + TSS region transcription start site region 68702
Tssr68703 7 117411434 to 117411467 33 + TSS region transcription start site region 68703
Tssr2381 7 117449737 to 117449767 30 - TSS region transcription start site region 2381
Tssr74412 7 117470268 to 117470287 19 - TSS region transcription start site region 74412
Tssr74413 7 117475164 to 117475196 32 - TSS region transcription start site region 74413
Tssr68704 7 117485533 to 117485538 5 + TSS region transcription start site region 68704
Tssr74414 7 117486496 to 117486522 26 - TSS region transcription start site region 74414
Tssr74415 7 117486545 to 117486556 11 - TSS region transcription start site region 74415
Tssr68705 7 117486707 to 117486754 47 + TSS region transcription start site region 68705