Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:113595342-117335348

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251 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr2376 7 113621597 to 113621606 9 + TSS region transcription start site region 2376
Gm23700 7 113666915 to 113667016 101 - miRNA gene predicted gene, 23700
Gm39072 7 113669626 to 113684665 15039 - lncRNA gene predicted gene, 39072
Tssr74334 7 113699769 to 113699771 2 - TSS region transcription start site region 74334
Gm5600 7 113706094 to 113711001 4907 - lincRNA gene predicted gene 5600
Gm29507 7 113729654 to 113752166 22512 + lincRNA gene predicted gene 29507
Tssr2377 7 113760218 to 113760221 3 + TSS region transcription start site region 2377
Cpgi19594 7 113765632 to 113767023 1391 CpG island CpG island 19594
Tssr68625 7 113765775 to 113765795 20 + TSS region transcription start site region 68625
Tssr68626 7 113765837 to 113765847 10 + TSS region transcription start site region 68626
Tssr68627 7 113765906 to 113765911 5 + TSS region transcription start site region 68627
Spon1 7 113765998 to 114043370 277372 + protein coding gene spondin 1, (f-spondin) extracellular matrix protein
Tssr68628 7 113766025 to 113766039 14 + TSS region transcription start site region 68628
Tssr68629 7 113766044 to 113766063 19 + TSS region transcription start site region 68629
Tssr68630 7 113766083 to 113766098 15 + TSS region transcription start site region 68630
Tssr68631 7 113766119 to 113766199 80 + TSS region transcription start site region 68631
Tssr68632 7 113766241 to 113766255 14 + TSS region transcription start site region 68632
Tssr74335 7 113816981 to 113816992 11 - TSS region transcription start site region 74335
Tssr68633 7 114041030 to 114041062 32 + TSS region transcription start site region 68633
Rras2 7 114046782 to 114117781 70999 - protein coding gene related RAS viral (r-ras) oncogene 2
Tssr74336 7 114070172 to 114070192 20 - TSS region transcription start site region 74336
Gm45615 7 114086898 to 114088357 1459 + antisense lncRNA gene predicted gene 45615
Tssr68634 7 114088228 to 114088238 10 + TSS region transcription start site region 68634
Cpgi19595 7 114116727 to 114118181 1454 CpG island CpG island 19595
Tssr74337 7 114117735 to 114117750 15 - TSS region transcription start site region 74337
Tssr74338 7 114117761 to 114117787 26 - TSS region transcription start site region 74338
Tssr68635 7 114139642 to 114139664 22 + TSS region transcription start site region 68635
Tssr2378 7 114152268 to 114152271 3 + TSS region transcription start site region 2378
Tssr2379 7 114152605 to 114152610 5 + TSS region transcription start site region 2379
Tssr68636 7 114181375 to 114181407 32 + TSS region transcription start site region 68636
Gm45454 7 114208634 to 114209088 454 - pseudogene predicted gene 45454
Copb1 7 114215559 to 114254680 39121 - protein coding gene coatomer protein complex, subunit beta 1
Tssr74339 7 114234996 to 114235009 13 - TSS region transcription start site region 74339
Tssr74340 7 114237622 to 114237631 9 - TSS region transcription start site region 74340
Cpgi19596 7 114254060 to 114254884 824 CpG island CpG island 19596
Tssr74341 7 114254648 to 114254657 9 - TSS region transcription start site region 74341
Tssr74342 7 114254659 to 114254733 74 - TSS region transcription start site region 74342
Psma1 7 114264606 to 114276118 11512 - protein coding gene proteasome (prosome, macropain) subunit, alpha type 1
Cpgi19597 7 114275717 to 114276408 691 CpG island CpG island 19597
Tssr74343 7 114276042 to 114276102 60 - TSS region transcription start site region 74343
Tssr74344 7 114276107 to 114276125 18 - TSS region transcription start site region 74344
Tssr68637 7 114276302 to 114276331 29 + TSS region transcription start site region 68637
Tssr68638 7 114290337 to 114290354 17 + TSS region transcription start site region 68638
Tssr68639 7 114291611 to 114291626 15 + TSS region transcription start site region 68639
Tssr68640 7 114297534 to 114297541 7 + TSS region transcription start site region 68640
4933406I18Rik 7 114315479 to 114415161 99682 - lincRNA gene RIKEN cDNA 4933406I18 gene
Tssr68641 7 114316712 to 114316724 12 + TSS region transcription start site region 68641
Tssr74345 7 114317517 to 114317528 11 - TSS region transcription start site region 74345
Tssr68642 7 114317645 to 114317662 17 + TSS region transcription start site region 68642
Tssr68643 7 114317664 to 114317675 11 + TSS region transcription start site region 68643
A930016I07Rik 7 114364335 to 114365214 879 unclassified gene RIKEN cDNA A930016I07 gene
Cpgi19598 7 114414459 to 114416777 2318 CpG island CpG island 19598
Tssr74346 7 114415037 to 114415061 24 - TSS region transcription start site region 74346
Tssr74347 7 114415128 to 114415166 38 - TSS region transcription start site region 74347
Tssr68644 7 114415205 to 114415267 62 + TSS region transcription start site region 68644
Tssr68645 7 114415272 to 114415297 25 + TSS region transcription start site region 68645
Pde3b 7 114415281 to 114539251 123970 + protein coding gene phosphodiesterase 3B, cGMP-inhibited
Tssr68646 7 114415377 to 114415384 7 + TSS region transcription start site region 68646
Tssr74348 7 114416483 to 114416532 49 - TSS region transcription start site region 74348
Tssr74349 7 114416603 to 114416620 17 - TSS region transcription start site region 74349
Tssr74350 7 114416626 to 114416637 11 - TSS region transcription start site region 74350
Tssr68647 7 114416705 to 114416719 14 + TSS region transcription start site region 68647
Tssr74351 7 114447395 to 114447422 27 - TSS region transcription start site region 74351
Tssr74352 7 114479912 to 114479925 13 - TSS region transcription start site region 74352
Tssr68648 7 114482706 to 114482716 10 + TSS region transcription start site region 68648
Tssr68649 7 114494563 to 114494576 13 + TSS region transcription start site region 68649
Tssr68650 7 114502423 to 114502429 6 + TSS region transcription start site region 68650
Tssr68651 7 114536790 to 114536810 20 + TSS region transcription start site region 68651
Cyp2r1 7 114549682 to 114562972 13290 - protein coding gene cytochrome P450, family 2, subfamily r, polypeptide 1
Cpgi19599 7 114562464 to 114563215 751 CpG island CpG island 19599
Tssr74353 7 114562945 to 114562989 44 - TSS region transcription start site region 74353
Tssr68652 7 114570963 to 114570987 24 + TSS region transcription start site region 68652
Calca 7 114631478 to 114636357 4879 - protein coding gene calcitonin/calcitonin-related polypeptide, alpha
Tssr74354 7 114634140 to 114634158 18 - TSS region transcription start site region 74354
Cpgi19600 7 114635788 to 114636373 585 CpG island CpG island 19600
Tssr74355 7 114636299 to 114636315 16 - TSS region transcription start site region 74355
Tssr2380 7 114667937 to 114667941 4 + TSS region transcription start site region 2380
Tssr68653 7 114698498 to 114698501 3 + TSS region transcription start site region 68653
Gm18599 7 114698520 to 114699644 1124 - pseudogene predicted gene, 18599
Gm15500 7 114705216 to 114706234 1018 - pseudogene predicted pseudogene 15500
Tssr74356 7 114706237 to 114706241 4 - TSS region transcription start site region 74356
Tssr68654 7 114717279 to 114717290 11 + TSS region transcription start site region 68654
Tssr68655 7 114717293 to 114717305 12 + TSS region transcription start site region 68655
Tssr68656 7 114717329 to 114717346 17 + TSS region transcription start site region 68656
Tssr68657 7 114717429 to 114717448 19 + TSS region transcription start site region 68657
Tssr68658 7 114718643 to 114718661 18 + TSS region transcription start site region 68658
Calcb 7 114718643 to 114723365 4722 + protein coding gene calcitonin-related polypeptide, beta
Tssr68659 7 114719586 to 114719621 35 + TSS region transcription start site region 68659
Tssr68660 7 114722191 to 114722208 17 + TSS region transcription start site region 68660
Tssr68661 7 114722244 to 114722259 15 + TSS region transcription start site region 68661
Tssr68662 7 114722451 to 114722483 32 + TSS region transcription start site region 68662
Tssr68663 7 114722781 to 114722795 14 + TSS region transcription start site region 68663
Insc 7 114743694 to 114850383 106689 + protein coding gene INSC spindle orientation adaptor protein
Tssr68664 7 114743715 to 114743733 18 + TSS region transcription start site region 68664
Tssr68665 7 114745526 to 114745536 10 + TSS region transcription start site region 68665
Cpgi19601 7 114745584 to 114745988 404 CpG island CpG island 19601
Tssr68666 7 114745674 to 114745683 9 + TSS region transcription start site region 68666
Tssr68667 7 114745685 to 114745718 33 + TSS region transcription start site region 68667
Tssr68668 7 114745907 to 114745931 24 + TSS region transcription start site region 68668
Tssr68669 7 114745939 to 114745950 11 + TSS region transcription start site region 68669
Tssr68670 7 114753698 to 114753713 15 + TSS region transcription start site region 68670
Tssr68671 7 114753759 to 114753764 5 + TSS region transcription start site region 68671
Tssr68672 7 114753780 to 114753793 13 + TSS region transcription start site region 68672
Tssr68673 7 114753795 to 114753828 33 + TSS region transcription start site region 68673
Tssr68674 7 114753832 to 114753837 5 + TSS region transcription start site region 68674
Tssr68675 7 114768752 to 114768763 11 + TSS region transcription start site region 68675
Tssr68676 7 114768767 to 114768781 14 + TSS region transcription start site region 68676
Tssr68677 7 114768784 to 114768798 14 + TSS region transcription start site region 68677
Tssr68678 7 114768881 to 114768891 10 + TSS region transcription start site region 68678
Gm24982 7 114832383 to 114832514 131 - snoRNA gene predicted gene, 24982
Tssr68679 7 114846304 to 114846323 19 + TSS region transcription start site region 68679
Tssr68680 7 114846325 to 114846338 13 + TSS region transcription start site region 68680
Gm45017 7 114851344 to 114854571 3227 - lincRNA gene predicted gene 45017
D7Mit98 7 114917267 to 114917439 172 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 98
Rps4l-ps 7 114926959 to 114927726 767 - pseudogene ribosomal protein S4-like, pseudogene
Cpgi19602 7 114927061 to 114927815 754 CpG island CpG island 19602
Tssr74357 7 114927779 to 114927781 2 - TSS region transcription start site region 74357
Gm22669 7 114936545 to 114936862 317 + unclassified non-coding RNA gene predicted gene, 22669
Gm45020 7 114942122 to 114948497 6375 - lincRNA gene predicted gene 45020
A730082K24Rik 7 114948650 to 114983960 35310 + lincRNA gene RIKEN cDNA A730082K24 gene
Tssr68681 7 115020323 to 115020336 13 + TSS region transcription start site region 68681
Gm34225 7 115031937 to 115066824 34887 + lincRNA gene predicted gene, 34225
Tssr68682 7 115110012 to 115110016 4 + TSS region transcription start site region 68682
Gm34282 7 115132426 to 115171203 38777 + lncRNA gene predicted gene, 34282
Tssr68683 7 115171988 to 115172003 15 + TSS region transcription start site region 68683
Rpl19-ps10 7 115172056 to 115172385 329 + pseudogene ribosomal protein L19, pseudogene 10
Gm27684 7 115172273 to 115172352 79 + miRNA gene predicted gene, 27684
Tssr74358 7 115312914 to 115312919 5 - TSS region transcription start site region 74358
D7Mit99 7 115375979 to 115376135 156 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 99
Gm45999 7 115392184 to 115398303 6119 - lncRNA gene predicted gene, 45999
Tssr68684 7 115465342 to 115465348 6 + TSS region transcription start site region 68684
Sox6 7 115470872 to 116038796 567924 - protein coding gene SRY (sex determining region Y)-box 6
Tssr74359 7 115550575 to 115550601 26 - TSS region transcription start site region 74359
D7Mit253.1 7 115565540 to 115565649 109 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 253.1
D7Dcr48 7 115565680 to 115565778 98 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 48
Eae26 7 115565687 to 115565775 88 QTL experimental allergic encephalomyelitis susceptibility 26
D7Mit253 7 115565687 to 115565775 88 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 253
Tssr74360 7 115597891 to 115597928 37 - TSS region transcription start site region 74360
Tssr74361 7 115664054 to 115664058 4 - TSS region transcription start site region 74361
Tssr74362 7 115697188 to 115697220 32 - TSS region transcription start site region 74362
Tssr74363 7 115698184 to 115698206 22 - TSS region transcription start site region 74363
Tssr74364 7 115722738 to 115722741 3 - TSS region transcription start site region 74364
Tssr74365 7 115725006 to 115725009 3 - TSS region transcription start site region 74365
Tssr74366 7 115737934 to 115737936 2 - TSS region transcription start site region 74366
Asrq7 7 115795739 to 115795739 0 QTL acoustic startle response 7
Tssr74367 7 115824699 to 115824752 53 - TSS region transcription start site region 74367
Tssr74368 7 115841620 to 115841624 4 - TSS region transcription start site region 74368
D7Mit237 7 115842797 to 115842920 123 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 237
Tssr74369 7 115846080 to 115846112 32 - TSS region transcription start site region 74369
Tssr74370 7 115846118 to 115846154 36 - TSS region transcription start site region 74370
Tssr74371 7 115846158 to 115846159 1 - TSS region transcription start site region 74371
Tssr74372 7 115846162 to 115846173 11 - TSS region transcription start site region 74372
Tssr74373 7 115859820 to 115859846 26 - TSS region transcription start site region 74373
Tssr74374 7 115859847 to 115859864 17 - TSS region transcription start site region 74374
Mdq11 7 115893951 to 115893951 0 QTL mammary ductal QTL 11
Tssr74375 7 115953298 to 115953328 30 - TSS region transcription start site region 74375
Tssr74376 7 115953345 to 115953355 10 - TSS region transcription start site region 74376
Tssr68685 7 115995266 to 115995286 20 + TSS region transcription start site region 68685
Gm45025 7 115995274 to 116014145 18871 + antisense lncRNA gene predicted gene 45025
Tssr74377 7 116030971 to 116031000 29 - TSS region transcription start site region 74377
Tssr74378 7 116031092 to 116031122 30 - TSS region transcription start site region 74378
Cpgi19603 7 116031298 to 116032524 1226 CpG island CpG island 19603
Tssr68686 7 116031920 to 116031932 12 + TSS region transcription start site region 68686
Sox6os 7 116031979 to 116032550 571 + antisense lncRNA gene SRY (sex determining region Y)-box 6, opposite strand
Tssr68687 7 116031996 to 116032009 13 + TSS region transcription start site region 68687
Cpgi19604 7 116033464 to 116034792 1328 CpG island CpG island 19604
Tssr74379 7 116033606 to 116033624 18 - TSS region transcription start site region 74379
Tssr74380 7 116033811 to 116033822 11 - TSS region transcription start site region 74380
Tssr74381 7 116033863 to 116033895 32 - TSS region transcription start site region 74381
Tssr74382 7 116034309 to 116034338 29 - TSS region transcription start site region 74382
Tssr74383 7 116034390 to 116034417 27 - TSS region transcription start site region 74383
Tssr74384 7 116034463 to 116034543 80 - TSS region transcription start site region 74384
Tssr74385 7 116034597 to 116034619 22 - TSS region transcription start site region 74385
Tssr74386 7 116038734 to 116038750 16 - TSS region transcription start site region 74386
Tssr74387 7 116038804 to 116038818 14 - TSS region transcription start site region 74387
Cpgi19605 7 116039427 to 116040499 1072 CpG island CpG island 19605
Tssr74388 7 116039564 to 116039577 13 - TSS region transcription start site region 74388
1700003G18Rik 7 116081762 to 116093149 11387 - lncRNA gene RIKEN cDNA 1700003G18 gene
Gm4353 7 116082863 to 116084633 1770 - pseudogene predicted gene 4353
Cpgi19606 7 116093006 to 116093734 728 CpG island CpG island 19606
Tssr74389 7 116093119 to 116093165 46 - TSS region transcription start site region 74389
Tssr68688 7 116093296 to 116093329 33 + TSS region transcription start site region 68688
Tssr74390 7 116093311 to 116093320 9 - TSS region transcription start site region 74390
Tssr68689 7 116093339 to 116093372 33 + TSS region transcription start site region 68689
1110004F10Rik 7 116093380 to 116105210 11830 + protein coding gene RIKEN cDNA 1110004F10 gene
Plekha7 7 116123485 to 116308376 184891 - protein coding gene pleckstrin homology domain containing, family A member 7
Tssr74391 7 116198487 to 116198517 30 - TSS region transcription start site region 74391
Tssr74392 7 116202356 to 116202360 4 - TSS region transcription start site region 74392
Cpgi19607 7 116236976 to 116238048 1072 CpG island CpG island 19607
Tssr74393 7 116237615 to 116237630 15 - TSS region transcription start site region 74393
Tssr74394 7 116237643 to 116237661 18 - TSS region transcription start site region 74394
Tssr74395 7 116237767 to 116237781 14 - TSS region transcription start site region 74395
Tssr74396 7 116237800 to 116237821 21 - TSS region transcription start site region 74396
Tssr74397 7 116238384 to 116238392 8 - TSS region transcription start site region 74397
Tssr74398 7 116238412 to 116238427 15 - TSS region transcription start site region 74398
Tssr74399 7 116264255 to 116264265 10 - TSS region transcription start site region 74399
Tssr74400 7 116264274 to 116264280 6 - TSS region transcription start site region 74400
Gm44867 7 116281511 to 116282885 1374 - sense intronic lncRNA gene predicted gene 44867
Tssr74401 7 116290560 to 116290602 42 - TSS region transcription start site region 74401
Cpgi19608 7 116307079 to 116308771 1692 CpG island CpG island 19608