Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:113336626-115496637

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Btbd10 7 113315626 to 113369392 53766 - protein coding gene BTB (POZ) domain containing 10
Tssr74325 7 113347273 to 113347293 20 - TSS region transcription start site region 74325
Tssr74326 7 113347376 to 113347413 37 - TSS region transcription start site region 74326
Tssr74327 7 113368543 to 113368549 6 - TSS region transcription start site region 74327
Tssr74328 7 113368811 to 113368839 28 - TSS region transcription start site region 74328
Cpgi19592 7 113368863 to 113370031 1168 CpG island CpG island 19592
Tssr68613 7 113368946 to 113368955 9 + TSS region transcription start site region 68613
Tssr74329 7 113369299 to 113369310 11 - TSS region transcription start site region 74329
Tssr74330 7 113369326 to 113369395 69 - TSS region transcription start site region 74330
Tssr68614 7 113369468 to 113369509 41 + TSS region transcription start site region 68614
Pth 7 113385580 to 113388570 2990 - protein coding gene parathyroid hormone
Tssr74331 7 113388563 to 113388578 15 - TSS region transcription start site region 74331
Tssr68615 7 113392388 to 113392389 1 + TSS region transcription start site region 68615
Tssr68616 7 113419735 to 113419738 3 + TSS region transcription start site region 68616
Gm45614 7 113420374 to 113421094 720 + pseudogene predicted gene 45614
Gm18780 7 113448346 to 113448919 573 - pseudogene predicted gene, 18780
Tssr68617 7 113512817 to 113512820 3 + TSS region transcription start site region 68617
Cpgi19593 7 113513040 to 113514523 1483 CpG island CpG island 19593
Tssr68618 7 113513815 to 113513827 12 + TSS region transcription start site region 68618
Tssr68619 7 113513829 to 113513846 17 + TSS region transcription start site region 68619
Far1 7 113513834 to 113570888 57054 + protein coding gene fatty acyl CoA reductase 1
Tssr68620 7 113513854 to 113513909 55 + TSS region transcription start site region 68620
Tssr68621 7 113514085 to 113514109 24 + TSS region transcription start site region 68621
Tssr68622 7 113514111 to 113514139 28 + TSS region transcription start site region 68622
Tssr68623 7 113514164 to 113514169 5 + TSS region transcription start site region 68623
Far1os 7 113538026 to 113564987 26961 - antisense lncRNA gene fatty acyl CoA reductase 1, opposite strand
Tssr68624 7 113556774 to 113556823 49 + TSS region transcription start site region 68624
Tssr74332 7 113564961 to 113564969 8 - TSS region transcription start site region 74332
Tssr74333 7 113564972 to 113564986 14 - TSS region transcription start site region 74333
Gm33828 7 113592773 to 113593815 1042 + pseudogene predicted gene, 33828
Gm45612 7 113592862 to 113593021 159 + pseudogene predicted gene 45612
Tssr2376 7 113621597 to 113621606 9 + TSS region transcription start site region 2376
Gm23700 7 113666915 to 113667016 101 - miRNA gene predicted gene, 23700
Gm39072 7 113669626 to 113684665 15039 - lncRNA gene predicted gene, 39072
Tssr74334 7 113699769 to 113699771 2 - TSS region transcription start site region 74334
Gm5600 7 113706094 to 113711001 4907 - lincRNA gene predicted gene 5600
Gm29507 7 113729654 to 113752166 22512 + lincRNA gene predicted gene 29507
Tssr2377 7 113760218 to 113760221 3 + TSS region transcription start site region 2377
Cpgi19594 7 113765632 to 113767023 1391 CpG island CpG island 19594
Tssr68625 7 113765775 to 113765795 20 + TSS region transcription start site region 68625
Tssr68626 7 113765837 to 113765847 10 + TSS region transcription start site region 68626
Tssr68627 7 113765906 to 113765911 5 + TSS region transcription start site region 68627
Spon1 7 113765998 to 114043370 277372 + protein coding gene spondin 1, (f-spondin) extracellular matrix protein
Tssr68628 7 113766025 to 113766039 14 + TSS region transcription start site region 68628
Tssr68629 7 113766044 to 113766063 19 + TSS region transcription start site region 68629
Tssr68630 7 113766083 to 113766098 15 + TSS region transcription start site region 68630
Tssr68631 7 113766119 to 113766199 80 + TSS region transcription start site region 68631
Tssr68632 7 113766241 to 113766255 14 + TSS region transcription start site region 68632
Tssr74335 7 113816981 to 113816992 11 - TSS region transcription start site region 74335
Tssr68633 7 114041030 to 114041062 32 + TSS region transcription start site region 68633
Rras2 7 114046782 to 114117781 70999 - protein coding gene related RAS viral (r-ras) oncogene 2
Tssr74336 7 114070172 to 114070192 20 - TSS region transcription start site region 74336
Gm45615 7 114086898 to 114088357 1459 + antisense lncRNA gene predicted gene 45615
Tssr68634 7 114088228 to 114088238 10 + TSS region transcription start site region 68634
Cpgi19595 7 114116727 to 114118181 1454 CpG island CpG island 19595
Tssr74337 7 114117735 to 114117750 15 - TSS region transcription start site region 74337
Tssr74338 7 114117761 to 114117787 26 - TSS region transcription start site region 74338
Tssr68635 7 114139642 to 114139664 22 + TSS region transcription start site region 68635
Tssr2378 7 114152268 to 114152271 3 + TSS region transcription start site region 2378
Tssr2379 7 114152605 to 114152610 5 + TSS region transcription start site region 2379
Tssr68636 7 114181375 to 114181407 32 + TSS region transcription start site region 68636
Gm45454 7 114208634 to 114209088 454 - pseudogene predicted gene 45454
Copb1 7 114215559 to 114254680 39121 - protein coding gene coatomer protein complex, subunit beta 1
Tssr74339 7 114234996 to 114235009 13 - TSS region transcription start site region 74339
Tssr74340 7 114237622 to 114237631 9 - TSS region transcription start site region 74340
Cpgi19596 7 114254060 to 114254884 824 CpG island CpG island 19596
Tssr74341 7 114254648 to 114254657 9 - TSS region transcription start site region 74341
Tssr74342 7 114254659 to 114254733 74 - TSS region transcription start site region 74342
Psma1 7 114264606 to 114276118 11512 - protein coding gene proteasome (prosome, macropain) subunit, alpha type 1
Cpgi19597 7 114275717 to 114276408 691 CpG island CpG island 19597
Tssr74343 7 114276042 to 114276102 60 - TSS region transcription start site region 74343
Tssr74344 7 114276107 to 114276125 18 - TSS region transcription start site region 74344
Tssr68637 7 114276302 to 114276331 29 + TSS region transcription start site region 68637
Tssr68638 7 114290337 to 114290354 17 + TSS region transcription start site region 68638
Tssr68639 7 114291611 to 114291626 15 + TSS region transcription start site region 68639
Tssr68640 7 114297534 to 114297541 7 + TSS region transcription start site region 68640
4933406I18Rik 7 114315479 to 114415161 99682 - lincRNA gene RIKEN cDNA 4933406I18 gene
Tssr68641 7 114316712 to 114316724 12 + TSS region transcription start site region 68641
Tssr74345 7 114317517 to 114317528 11 - TSS region transcription start site region 74345
Tssr68642 7 114317645 to 114317662 17 + TSS region transcription start site region 68642
Tssr68643 7 114317664 to 114317675 11 + TSS region transcription start site region 68643
A930016I07Rik 7 114364335 to 114365214 879 unclassified gene RIKEN cDNA A930016I07 gene
Cpgi19598 7 114414459 to 114416777 2318 CpG island CpG island 19598
Tssr74346 7 114415037 to 114415061 24 - TSS region transcription start site region 74346
Tssr74347 7 114415128 to 114415166 38 - TSS region transcription start site region 74347
Tssr68644 7 114415205 to 114415267 62 + TSS region transcription start site region 68644
Tssr68645 7 114415272 to 114415297 25 + TSS region transcription start site region 68645
Pde3b 7 114415281 to 114539251 123970 + protein coding gene phosphodiesterase 3B, cGMP-inhibited
Tssr68646 7 114415377 to 114415384 7 + TSS region transcription start site region 68646
Tssr74348 7 114416483 to 114416532 49 - TSS region transcription start site region 74348
Tssr74349 7 114416603 to 114416620 17 - TSS region transcription start site region 74349
Tssr74350 7 114416626 to 114416637 11 - TSS region transcription start site region 74350
Tssr68647 7 114416705 to 114416719 14 + TSS region transcription start site region 68647
Tssr74351 7 114447395 to 114447422 27 - TSS region transcription start site region 74351
Tssr74352 7 114479912 to 114479925 13 - TSS region transcription start site region 74352
Tssr68648 7 114482706 to 114482716 10 + TSS region transcription start site region 68648
Tssr68649 7 114494563 to 114494576 13 + TSS region transcription start site region 68649
Tssr68650 7 114502423 to 114502429 6 + TSS region transcription start site region 68650
Tssr68651 7 114536790 to 114536810 20 + TSS region transcription start site region 68651
Cyp2r1 7 114549682 to 114562972 13290 - protein coding gene cytochrome P450, family 2, subfamily r, polypeptide 1
Cpgi19599 7 114562464 to 114563215 751 CpG island CpG island 19599
Tssr74353 7 114562945 to 114562989 44 - TSS region transcription start site region 74353
Tssr68652 7 114570963 to 114570987 24 + TSS region transcription start site region 68652
Calca 7 114631478 to 114636357 4879 - protein coding gene calcitonin/calcitonin-related polypeptide, alpha
Tssr74354 7 114634140 to 114634158 18 - TSS region transcription start site region 74354
Cpgi19600 7 114635788 to 114636373 585 CpG island CpG island 19600
Tssr74355 7 114636299 to 114636315 16 - TSS region transcription start site region 74355
Tssr2380 7 114667937 to 114667941 4 + TSS region transcription start site region 2380
Tssr68653 7 114698498 to 114698501 3 + TSS region transcription start site region 68653
Gm18599 7 114698520 to 114699644 1124 - pseudogene predicted gene, 18599
Gm15500 7 114705216 to 114706234 1018 - pseudogene predicted pseudogene 15500
Tssr74356 7 114706237 to 114706241 4 - TSS region transcription start site region 74356
Tssr68654 7 114717279 to 114717290 11 + TSS region transcription start site region 68654
Tssr68655 7 114717293 to 114717305 12 + TSS region transcription start site region 68655
Tssr68656 7 114717329 to 114717346 17 + TSS region transcription start site region 68656
Tssr68657 7 114717429 to 114717448 19 + TSS region transcription start site region 68657
Tssr68658 7 114718643 to 114718661 18 + TSS region transcription start site region 68658
Calcb 7 114718643 to 114723365 4722 + protein coding gene calcitonin-related polypeptide, beta
Tssr68659 7 114719586 to 114719621 35 + TSS region transcription start site region 68659
Tssr68660 7 114722191 to 114722208 17 + TSS region transcription start site region 68660
Tssr68661 7 114722244 to 114722259 15 + TSS region transcription start site region 68661
Tssr68662 7 114722451 to 114722483 32 + TSS region transcription start site region 68662
Tssr68663 7 114722781 to 114722795 14 + TSS region transcription start site region 68663
Insc 7 114743694 to 114850383 106689 + protein coding gene INSC spindle orientation adaptor protein
Tssr68664 7 114743715 to 114743733 18 + TSS region transcription start site region 68664
Tssr68665 7 114745526 to 114745536 10 + TSS region transcription start site region 68665
Cpgi19601 7 114745584 to 114745988 404 CpG island CpG island 19601
Tssr68666 7 114745674 to 114745683 9 + TSS region transcription start site region 68666
Tssr68667 7 114745685 to 114745718 33 + TSS region transcription start site region 68667
Tssr68668 7 114745907 to 114745931 24 + TSS region transcription start site region 68668
Tssr68669 7 114745939 to 114745950 11 + TSS region transcription start site region 68669
Tssr68670 7 114753698 to 114753713 15 + TSS region transcription start site region 68670
Tssr68671 7 114753759 to 114753764 5 + TSS region transcription start site region 68671
Tssr68672 7 114753780 to 114753793 13 + TSS region transcription start site region 68672
Tssr68673 7 114753795 to 114753828 33 + TSS region transcription start site region 68673
Tssr68674 7 114753832 to 114753837 5 + TSS region transcription start site region 68674
Tssr68675 7 114768752 to 114768763 11 + TSS region transcription start site region 68675
Tssr68676 7 114768767 to 114768781 14 + TSS region transcription start site region 68676
Tssr68677 7 114768784 to 114768798 14 + TSS region transcription start site region 68677
Tssr68678 7 114768881 to 114768891 10 + TSS region transcription start site region 68678
Gm24982 7 114832383 to 114832514 131 - snoRNA gene predicted gene, 24982
Tssr68679 7 114846304 to 114846323 19 + TSS region transcription start site region 68679
Tssr68680 7 114846325 to 114846338 13 + TSS region transcription start site region 68680
Gm45017 7 114851344 to 114854571 3227 - lincRNA gene predicted gene 45017
D7Mit98 7 114917267 to 114917439 172 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 98
Rps4l-ps 7 114926959 to 114927726 767 - pseudogene ribosomal protein S4-like, pseudogene
Cpgi19602 7 114927061 to 114927815 754 CpG island CpG island 19602
Tssr74357 7 114927779 to 114927781 2 - TSS region transcription start site region 74357
Gm22669 7 114936545 to 114936862 317 + unclassified non-coding RNA gene predicted gene, 22669
Gm45020 7 114942122 to 114948497 6375 - lincRNA gene predicted gene 45020
A730082K24Rik 7 114948650 to 114983960 35310 + lincRNA gene RIKEN cDNA A730082K24 gene
Tssr68681 7 115020323 to 115020336 13 + TSS region transcription start site region 68681
Gm34225 7 115031937 to 115066824 34887 + lincRNA gene predicted gene, 34225
Tssr68682 7 115110012 to 115110016 4 + TSS region transcription start site region 68682
Gm34282 7 115132426 to 115171203 38777 + lncRNA gene predicted gene, 34282
Tssr68683 7 115171988 to 115172003 15 + TSS region transcription start site region 68683
Rpl19-ps10 7 115172056 to 115172385 329 + pseudogene ribosomal protein L19, pseudogene 10
Gm27684 7 115172273 to 115172352 79 + miRNA gene predicted gene, 27684
Tssr74358 7 115312914 to 115312919 5 - TSS region transcription start site region 74358
D7Mit99 7 115375979 to 115376135 156 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 99
Gm45999 7 115392184 to 115398303 6119 - lncRNA gene predicted gene, 45999
Tssr68684 7 115465342 to 115465348 6 + TSS region transcription start site region 68684
Sox6 7 115470872 to 116038796 567924 - protein coding gene SRY (sex determining region Y)-box 6