Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:111027461-113137494

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi19581 7 111028637 to 111029468 831 CpG island CpG island 19581
Tssr68531 7 111028737 to 111028750 13 + TSS region transcription start site region 68531
Tssr68532 7 111028765 to 111028785 20 + TSS region transcription start site region 68532
Ctr9 7 111028951 to 111056377 27426 + protein coding gene CTR9 homolog, Paf1/RNA polymerase II complex component
Tssr68533 7 111028961 to 111028972 11 + TSS region transcription start site region 68533
Tssr68534 7 111028979 to 111029005 26 + TSS region transcription start site region 68534
Tssr68535 7 111029007 to 111029018 11 + TSS region transcription start site region 68535
Tssr68536 7 111029019 to 111029030 11 + TSS region transcription start site region 68536
Tssr68537 7 111056777 to 111056781 4 + TSS region transcription start site region 68537
Eif4g2 7 111067985 to 111083030 15045 - protein coding gene eukaryotic translation initiation factor 4, gamma 2
Tssr74281 7 111072730 to 111072765 35 - TSS region transcription start site region 74281
Tssr74282 7 111074062 to 111074104 42 - TSS region transcription start site region 74282
Tssr74283 7 111074477 to 111074514 37 - TSS region transcription start site region 74283
Tssr74284 7 111074722 to 111074745 23 - TSS region transcription start site region 74284
Tssr74285 7 111074818 to 111074838 20 - TSS region transcription start site region 74285
Tssr74286 7 111075611 to 111075669 58 - TSS region transcription start site region 74286
Gm23262 7 111076060 to 111076227 167 - snoRNA gene predicted gene, 23262
Tssr74287 7 111076155 to 111076176 21 - TSS region transcription start site region 74287
Tssr74288 7 111076178 to 111076194 16 - TSS region transcription start site region 74288
Tssr74289 7 111076217 to 111076231 14 - TSS region transcription start site region 74289
Tssr74290 7 111076384 to 111076398 14 - TSS region transcription start site region 74290
Tssr74291 7 111078121 to 111078139 18 - TSS region transcription start site region 74291
Tssr74292 7 111078504 to 111078555 51 - TSS region transcription start site region 74292
Tssr74293 7 111078556 to 111078568 12 - TSS region transcription start site region 74293
Tssr74294 7 111079316 to 111079337 21 - TSS region transcription start site region 74294
Tssr68538 7 111080175 to 111080193 18 + TSS region transcription start site region 68538
Tssr74295 7 111080289 to 111080313 24 - TSS region transcription start site region 74295
Tssr2372 7 111080317 to 111080322 5 - TSS region transcription start site region 2372
Tssr74296 7 111080931 to 111080946 15 - TSS region transcription start site region 74296
Tssr74297 7 111081596 to 111081637 41 - TSS region transcription start site region 74297
Cpgi19582 7 111081971 to 111083602 1631 CpG island CpG island 19582
Tssr74298 7 111082026 to 111082055 29 - TSS region transcription start site region 74298
Tssr74299 7 111082215 to 111082251 36 - TSS region transcription start site region 74299
Tssr74300 7 111082447 to 111082506 59 - TSS region transcription start site region 74300
Tssr74301 7 111082529 to 111082540 11 - TSS region transcription start site region 74301
Tssr74302 7 111082608 to 111082631 23 - TSS region transcription start site region 74302
Tssr74303 7 111082997 to 111083037 40 - TSS region transcription start site region 74303
Tssr68539 7 111083174 to 111083205 31 + TSS region transcription start site region 68539
Tssr68540 7 111083210 to 111083227 17 + TSS region transcription start site region 68540
Tssr68541 7 111083324 to 111083344 20 + TSS region transcription start site region 68541
Gm45378 7 111090106 to 111092816 2710 - unclassified gene predicted gene 45378
1700012D14Rik 7 111117673 to 111122675 5002 - lncRNA gene RIKEN cDNA 1700012D14 gene
Cpgi19583 7 111122057 to 111123204 1147 CpG island CpG island 19583
Tssr68542 7 111122175 to 111122196 21 + TSS region transcription start site region 68542
Tssr74304 7 111122668 to 111122709 41 - TSS region transcription start site region 74304
Tssr68543 7 111122835 to 111122870 35 + TSS region transcription start site region 68543
Tssr68544 7 111156224 to 111156233 9 + TSS region transcription start site region 68544
Gm33098 7 111210366 to 111220995 10629 + lncRNA gene predicted gene, 33098
Gm33145 7 111282910 to 111285680 2770 - lncRNA gene predicted gene, 33145
Tssr68545 7 111325978 to 111325983 5 + TSS region transcription start site region 68545
D7Mit150 7 111329661 to 111329803 142 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 150
5430402P08Rik 7 111366298 to 111395608 29310 + lincRNA gene RIKEN cDNA 5430402P08 gene
Gm5338 7 111386694 to 111387332 638 - pseudogene predicted gene 5338
Galnt18 7 111471661 to 111779977 308316 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 18
D7Mit356 7 111514329 to 111514441 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 356
D7Mit97 7 111560855 to 111560995 140 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 97
Tssr74305 7 111593845 to 111593871 26 - TSS region transcription start site region 74305
Tssr74306 7 111593936 to 111593949 13 - TSS region transcription start site region 74306
Tssr74307 7 111593978 to 111593990 12 - TSS region transcription start site region 74307
Tssr74308 7 111594231 to 111594245 14 - TSS region transcription start site region 74308
Tssr2373 7 111692814 to 111692852 38 - TSS region transcription start site region 2373
Tssr74309 7 111735948 to 111735976 28 - TSS region transcription start site region 74309
Tssr74310 7 111736017 to 111736044 27 - TSS region transcription start site region 74310
Tssr74311 7 111736047 to 111736064 17 - TSS region transcription start site region 74311
Tssr74312 7 111736141 to 111736153 12 - TSS region transcription start site region 74312
Cpgi19584 7 111778958 to 111780330 1372 CpG island CpG island 19584
Tssr74313 7 111779963 to 111779993 30 - TSS region transcription start site region 74313
Tssr74314 7 111780054 to 111780068 14 - TSS region transcription start site region 74314
Gm25787 7 111792920 to 111793011 91 - miRNA gene predicted gene, 25787
Gm45588 7 111857926 to 111858555 629 - pseudogene predicted gene 45588
Gm23345 7 111947181 to 111947330 149 - snRNA gene predicted gene, 23345
Tssr74315 7 112003823 to 112003828 5 - TSS region transcription start site region 74315
Gm33204 7 112009776 to 112012475 2699 + lncRNA gene predicted gene, 33204
Gm3960 7 112021951 to 112023495 1544 - unclassified gene predicted gene 3960
Cpgi19585 7 112022903 to 112024168 1265 CpG island CpG island 19585
Tssr68546 7 112023251 to 112023317 66 + TSS region transcription start site region 68546
Tssr68547 7 112023433 to 112023444 11 + TSS region transcription start site region 68547
Tssr68548 7 112023447 to 112023462 15 + TSS region transcription start site region 68548
Tssr68549 7 112023469 to 112023566 97 + TSS region transcription start site region 68549
Usp47 7 112023483 to 112111386 87903 + protein coding gene ubiquitin specific peptidase 47
Tssr68550 7 112023577 to 112023590 13 + TSS region transcription start site region 68550
Tssr74316 7 112024045 to 112024073 28 - TSS region transcription start site region 74316
Tssr74317 7 112024111 to 112024154 43 - TSS region transcription start site region 74317
Tssr68551 7 112074651 to 112074677 26 + TSS region transcription start site region 68551
Tssr68552 7 112077836 to 112077849 13 + TSS region transcription start site region 68552
Tssr68553 7 112082461 to 112082494 33 + TSS region transcription start site region 68553
D7Ertd602e 7 112082811 to 112083043 232 DNA segment DNA segment, Chr 7, ERATO Doi 602, expressed
Tssr68554 7 112083116 to 112083141 25 + TSS region transcription start site region 68554
Tssr68555 7 112093077 to 112093127 50 + TSS region transcription start site region 68555
Dkk3 7 112116017 to 112159057 43040 - protein coding gene dickkopf WNT signaling pathway inhibitor 3
Tssr74318 7 112140390 to 112140401 11 - TSS region transcription start site region 74318
Cpgi19586 7 112158257 to 112158481 224 CpG island CpG island 19586
Tssr74319 7 112158403 to 112158458 55 - TSS region transcription start site region 74319
Tssr74320 7 112159034 to 112159095 61 - TSS region transcription start site region 74320
Gm39071 7 112186831 to 112187850 1019 - lncRNA gene predicted gene, 39071
Gm39070 7 112199555 to 112203992 4437 + lncRNA gene predicted gene, 39070
D7Mit281 7 112212330 to 112212440 110 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 281
Gm33247 7 112216936 to 112217834 898 + lncRNA gene predicted gene, 33247
Cpgi19587 7 112225395 to 112226643 1248 CpG island CpG island 19587
Mical2 7 112225836 to 112355194 129358 + protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 2
Tssr68556 7 112225837 to 112225848 11 + TSS region transcription start site region 68556
Tssr68557 7 112225857 to 112225900 43 + TSS region transcription start site region 68557
Tssr68558 7 112226751 to 112226789 38 + TSS region transcription start site region 68558
Tssr68559 7 112238502 to 112238513 11 + TSS region transcription start site region 68559
Tssr68560 7 112238527 to 112238538 11 + TSS region transcription start site region 68560
Tssr68561 7 112241863 to 112241874 11 + TSS region transcription start site region 68561
Tssr68562 7 112283647 to 112283652 5 + TSS region transcription start site region 68562
Tssr68563 7 112310600 to 112310604 4 + TSS region transcription start site region 68563
Tssr68564 7 112336593 to 112336606 13 + TSS region transcription start site region 68564
Tssr68565 7 112342399 to 112342403 4 + TSS region transcription start site region 68565
Tssr68566 7 112354559 to 112354572 13 + TSS region transcription start site region 68566
Tssr68567 7 112354823 to 112354840 17 + TSS region transcription start site region 68567
Tssr68568 7 112361633 to 112361645 12 + TSS region transcription start site region 68568
Micalcl 7 112368308 to 112413104 44796 + protein coding gene MICAL C-terminal like
Tssr68569 7 112374839 to 112374864 25 + TSS region transcription start site region 68569
Tssr68570 7 112375213 to 112375259 46 + TSS region transcription start site region 68570
Tssr68571 7 112391195 to 112391210 15 + TSS region transcription start site region 68571
Tssr68572 7 112391249 to 112391269 20 + TSS region transcription start site region 68572
Tssr68573 7 112427025 to 112427038 13 + TSS region transcription start site region 68573
Cpgi19588 7 112427500 to 112428458 958 CpG island CpG island 19588
Tssr68574 7 112427671 to 112427680 9 + TSS region transcription start site region 68574
Parva 7 112427706 to 112591688 163982 + protein coding gene parvin, alpha
Tssr68575 7 112427715 to 112427718 3 + TSS region transcription start site region 68575
Tssr68576 7 112427866 to 112427882 16 + TSS region transcription start site region 68576
Tssr68577 7 112427885 to 112427952 67 + TSS region transcription start site region 68577
Tssr68578 7 112452936 to 112452959 23 + TSS region transcription start site region 68578
Gm45998 7 112459572 to 112465909 6337 + lncRNA gene predicted gene, 45998
Tssr68579 7 112500012 to 112500014 2 + TSS region transcription start site region 68579
Tssr68580 7 112519612 to 112519650 38 + TSS region transcription start site region 68580
Parvaos 7 112526972 to 112535683 8711 - antisense lncRNA gene parvin, alpha, opposite strand
Tssr74321 7 112535560 to 112535577 17 - TSS region transcription start site region 74321
2310014F06Rik 7 112612560 to 112680081 67521 - bidirectional promoter lncRNA gene RIKEN cDNA 2310014F06 gene
Gm24154 7 112618096 to 112618225 129 - snoRNA gene predicted gene, 24154
Gm45473 7 112652782 to 112653397 615 + pseudogene predicted gene 45473
Gm40451 7 112668458 to 112672262 3804 - lncRNA gene predicted gene, 40451
Cpgi19589 7 112678570 to 112680346 1776 CpG island CpG island 19589
Tssr68581 7 112679314 to 112679325 11 + TSS region transcription start site region 68581
Tead1 7 112679320 to 112906805 227485 + protein coding gene TEA domain family member 1
Tssr68582 7 112679327 to 112679373 46 + TSS region transcription start site region 68582
Tssr68583 7 112679378 to 112679387 9 + TSS region transcription start site region 68583
Tssr68584 7 112679401 to 112679422 21 + TSS region transcription start site region 68584
Tssr68585 7 112679426 to 112679431 5 + TSS region transcription start site region 68585
Tssr68586 7 112679443 to 112679466 23 + TSS region transcription start site region 68586
Tssr2374 7 112681050 to 112681069 19 - TSS region transcription start site region 2374
Tssr68587 7 112682725 to 112682729 4 + TSS region transcription start site region 68587
Tssr68588 7 112687222 to 112687225 3 + TSS region transcription start site region 68588
Tssr74322 7 112688510 to 112688520 10 - TSS region transcription start site region 74322
D7Mit370 7 112697610 to 112697705 95 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 370
Gm44462 7 112713951 to 112714079 128 + miRNA gene predicted gene, 44462
Tssr68589 7 112742025 to 112742060 35 + TSS region transcription start site region 68589
Tssr68590 7 112742070 to 112742080 10 + TSS region transcription start site region 68590
Tssr68591 7 112755685 to 112755690 5 + TSS region transcription start site region 68591
Tssr2375 7 112802923 to 112802925 2 + TSS region transcription start site region 2375
Tssr68592 7 112809797 to 112809810 13 + TSS region transcription start site region 68592
Tssr68593 7 112816123 to 112816132 9 + TSS region transcription start site region 68593
Tssr68594 7 112853153 to 112853158 5 + TSS region transcription start site region 68594
Tssr68595 7 112856598 to 112856613 15 + TSS region transcription start site region 68595
Tssr68596 7 112856616 to 112856625 9 + TSS region transcription start site region 68596
Tssr68597 7 112856631 to 112856636 5 + TSS region transcription start site region 68597
Tssr68598 7 112899009 to 112899013 4 + TSS region transcription start site region 68598
Tssr68599 7 112899940 to 112899953 13 + TSS region transcription start site region 68599
Tssr68600 7 112904901 to 112904906 5 + TSS region transcription start site region 68600
Tssr68601 7 112933861 to 112933878 17 + TSS region transcription start site region 68601
D7Mit222 7 112934466 to 112934612 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 222
D7Dcr47 7 112934478 to 112934618 140 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 47
Cia7 7 112934612 to 85716387 -27218225 QTL collagen induced arthritis QTL 7
Cpgi19590 7 112953678 to 112955549 1871 CpG island CpG island 19590
Tssr68602 7 112953955 to 112953975 20 + TSS region transcription start site region 68602
Rassf10 7 112953962 to 112957457 3495 + protein coding gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 10
Gm5599 7 112972096 to 112972883 787 - pseudogene predicted gene 5599
Gm33586 7 112983903 to 113010892 26989 + lincRNA gene predicted gene, 33586
Tssr68603 7 112993896 to 112993908 12 + TSS region transcription start site region 68603
Gm33527 7 112994293 to 113004975 10682 - lncRNA gene predicted gene, 33527
Gm40452 7 113048895 to 113050767 1872 - lncRNA gene predicted gene, 40452
4930543E12Rik 7 113100236 to 113142015 41779 - lincRNA gene RIKEN cDNA 4930543E12 gene
Gm23662 7 113119698 to 113119808 110 + rRNA gene predicted gene, 23662