Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:109706742-110736766

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Akip1 7 109703690 to 109712189 8499 + protein coding gene A kinase (PRKA) interacting protein 1
BC051019 7 109712181 to 109723850 11669 - protein coding gene cDNA sequence BC051019
Tssr74213 7 109723844 to 109723855 11 - TSS region transcription start site region 74213
Tssr74214 7 109723860 to 109723889 29 - TSS region transcription start site region 74214
Ascl3 7 109727465 to 109731726 4261 - protein coding gene achaete-scute family bHLH transcription factor 3
Cpgi19562 7 109727696 to 109728014 318 CpG island CpG island 19562
Tssr74215 7 109731708 to 109731715 7 - TSS region transcription start site region 74215
Tmem9b 7 109735836 to 109752263 16427 - protein coding gene TMEM9 domain family, member B
Cpgi19563 7 109751840 to 109752815 975 CpG island CpG island 19563
Tssr74216 7 109752193 to 109752208 15 - TSS region transcription start site region 74216
Tssr74217 7 109752210 to 109752290 80 - TSS region transcription start site region 74217
Tssr68474 7 109752307 to 109752342 35 + TSS region transcription start site region 68474
4930431P19Rik 7 109752320 to 109755278 2958 + pseudogene RIKEN cDNA 4930431P19 gene
Nrip3 7 109758056 to 109781545 23489 - protein coding gene nuclear receptor interacting protein 3
Tssr74218 7 109759341 to 109759348 7 - TSS region transcription start site region 74218
Tssr74219 7 109760208 to 109760213 5 - TSS region transcription start site region 74219
D7Mill13 7 109761607 to 109761831 224 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 13
Gm22822 7 109774612 to 109774718 106 - snRNA gene predicted gene, 22822
Cpgi19564 7 109781085 to 109782176 1091 CpG island CpG island 19564
Tssr74220 7 109781538 to 109781554 16 - TSS region transcription start site region 74220
D7Mit130 7 109788134 to 109788282 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 130
Tssr2366 7 109798672 to 109798678 6 + TSS region transcription start site region 2366
Scube2 7 109798690 to 109865679 66989 - protein coding gene signal peptide, CUB domain, EGF-like 2
Tssr74221 7 109807955 to 109807962 7 - TSS region transcription start site region 74221
Tssr74222 7 109807979 to 109807998 19 - TSS region transcription start site region 74222
Tssr74223 7 109808240 to 109808251 11 - TSS region transcription start site region 74223
Tssr74224 7 109840888 to 109840896 8 - TSS region transcription start site region 74224
Tssr74225 7 109840904 to 109840907 3 - TSS region transcription start site region 74225
Tssr74226 7 109840912 to 109840922 10 - TSS region transcription start site region 74226
Cpgi19565 7 109865094 to 109866117 1023 CpG island CpG island 19565
Tssr74227 7 109865637 to 109865652 15 - TSS region transcription start site region 74227
D7Ertd344e 7 109893026 to 109893245 219 DNA segment DNA segment, Chr 7, ERATO Doi 344, expressed
Dennd5a 7 109893780 to 109960470 66690 - protein coding gene DENN/MADD domain containing 5A
Tssr74228 7 109894010 to 109894027 17 - TSS region transcription start site region 74228
Tssr74229 7 109927337 to 109927340 3 - TSS region transcription start site region 74229
Tssr68475 7 109958274 to 109958279 5 + TSS region transcription start site region 68475
Cpgi19566 7 109959609 to 109960843 1234 CpG island CpG island 19566
Tssr74230 7 109960121 to 109960128 7 - TSS region transcription start site region 74230
Tssr74231 7 109960207 to 109960218 11 - TSS region transcription start site region 74231
Tssr74232 7 109960385 to 109960433 48 - TSS region transcription start site region 74232
Tssr74233 7 109960461 to 109960477 16 - TSS region transcription start site region 74233
Tssr74234 7 109960497 to 109960504 7 - TSS region transcription start site region 74234
Tmem41b 7 109972187 to 109986230 14043 - protein coding gene transmembrane protein 41B
Cpgi19567 7 109985683 to 109986591 908 CpG island CpG island 19567
Tssr74235 7 109986181 to 109986193 12 - TSS region transcription start site region 74235
Tssr74236 7 109986216 to 109986237 21 - TSS region transcription start site region 74236
Tssr74237 7 109986250 to 109986306 56 - TSS region transcription start site region 74237
Tssr74238 7 109986309 to 109986346 37 - TSS region transcription start site region 74238
Tssr74239 7 109986445 to 109986480 35 - TSS region transcription start site region 74239
Gm24842 7 109988078 to 109988131 53 + snRNA gene predicted gene, 24842
Tssr74240 7 109991429 to 109991441 12 - TSS region transcription start site region 74240
1600010M07Rik 7 109998377 to 110006646 8269 - antisense lncRNA gene RIKEN cDNA 1600010M07 gene
Cpgi19568 7 110003102 to 110003412 310 CpG island CpG island 19568
Tssr68476 7 110003574 to 110003576 2 + TSS region transcription start site region 68476
Gm23100 7 110003578 to 110003718 140 + snRNA gene predicted gene, 23100
Tssr74241 7 110006608 to 110006651 43 - TSS region transcription start site region 74241
Cpgi19569 7 110018115 to 110019140 1025 CpG island CpG island 19569
Tssr68477 7 110018254 to 110018267 13 + TSS region transcription start site region 68477
Ipo7 7 110018274 to 110056609 38335 + protein coding gene importin 7
Tssr68478 7 110018296 to 110018300 4 + TSS region transcription start site region 68478
Tssr68479 7 110018301 to 110018326 25 + TSS region transcription start site region 68479
Tssr68480 7 110023109 to 110023119 10 + TSS region transcription start site region 68480
Gm25636 7 110023210 to 110023342 132 + snoRNA gene predicted gene, 25636
Tssr68481 7 110029746 to 110029761 15 + TSS region transcription start site region 68481
Tssr68482 7 110044120 to 110044125 5 + TSS region transcription start site region 68482
Tssr68483 7 110046349 to 110046354 5 + TSS region transcription start site region 68483
Snora23 7 110046364 to 110046547 183 + snoRNA gene small nucleolar RNA, H/ACA box 23
AA474408 7 110057987 to 110061325 3338 - unclassified gene expressed sequence AA474408
Tssr74242 7 110059677 to 110059734 57 - TSS region transcription start site region 74242
Tssr74243 7 110059738 to 110059749 11 - TSS region transcription start site region 74243
Tssr74244 7 110060804 to 110060819 15 - TSS region transcription start site region 74244
Cpgi19570 7 110060878 to 110062285 1407 CpG island CpG island 19570
Tssr74245 7 110061319 to 110061341 22 - TSS region transcription start site region 74245
Tssr74246 7 110061353 to 110061364 11 - TSS region transcription start site region 74246
Tssr74247 7 110061538 to 110061552 14 - TSS region transcription start site region 74247
Zfp143 7 110061670 to 110095396 33726 + protein coding gene zinc finger protein 143
Tssr68484 7 110061703 to 110061732 29 + TSS region transcription start site region 68484
Tssr68485 7 110061803 to 110061817 14 + TSS region transcription start site region 68485
Tssr68486 7 110062104 to 110062123 19 + TSS region transcription start site region 68486
D7Wsu130e 7 110118864 to 110120016 1152 unclassified gene DNA segment, Chr 7, Wayne State University 130, expressed
Gm45819 7 110119990 to 110121740 1750 + unclassified gene predicted gene 45819
Tssr74248 7 110120326 to 110120332 6 - TSS region transcription start site region 74248
Cpgi19571 7 110121423 to 110123392 1969 CpG island CpG island 19571
Tssr74249 7 110121579 to 110121593 14 - TSS region transcription start site region 74249
Tssr68487 7 110122033 to 110122135 102 + TSS region transcription start site region 68487
Wee1 7 110122046 to 110143286 21240 + protein coding gene WEE 1 homolog 1 (S. pombe)
Tssr68488 7 110122253 to 110122295 42 + TSS region transcription start site region 68488
Tssr68489 7 110122299 to 110122323 24 + TSS region transcription start site region 68489
Tssr68490 7 110122507 to 110122579 72 + TSS region transcription start site region 68490
Tssr68491 7 110122719 to 110122778 59 + TSS region transcription start site region 68491
Tssr74250 7 110122890 to 110122903 13 - TSS region transcription start site region 74250
Tssr74251 7 110122919 to 110122944 25 - TSS region transcription start site region 74251
Tssr74252 7 110123001 to 110123029 28 - TSS region transcription start site region 74252
Cpgi19572 7 110164288 to 110165075 787 CpG island CpG island 19572
Tssr68492 7 110164315 to 110164321 6 + TSS region transcription start site region 68492
Tssr74253 7 110164868 to 110164875 7 - TSS region transcription start site region 74253
Tssr2367 7 110164881 to 110164926 45 - TSS region transcription start site region 2367
Tssr2368 7 110166226 to 110166259 33 - TSS region transcription start site region 2368
Tssr74254 7 110166352 to 110166363 11 - TSS region transcription start site region 74254
Cpgi19573 7 110221564 to 110222304 740 CpG island CpG island 19573
Tssr68493 7 110221697 to 110221708 11 + TSS region transcription start site region 68493
Swap70 7 110221711 to 110283506 61795 + protein coding gene SWA-70 protein
Tssr68494 7 110221724 to 110221739 15 + TSS region transcription start site region 68494
Tssr68495 7 110221742 to 110221766 24 + TSS region transcription start site region 68495
Tssr68496 7 110237739 to 110237741 2 + TSS region transcription start site region 68496
Tssr68497 7 110237878 to 110237881 3 + TSS region transcription start site region 68497
Tssr68498 7 110241605 to 110241609 4 + TSS region transcription start site region 68498
Tssr2369 7 110243570 to 110243574 4 + TSS region transcription start site region 2369
Gm45515 7 110277782 to 110281527 3745 - antisense lncRNA gene predicted gene 45515
Gm32861 7 110285502 to 110289142 3640 - lncRNA gene predicted gene, 32861
Tssr74255 7 110288228 to 110288236 8 - TSS region transcription start site region 74255
Tssr74256 7 110293463 to 110293467 4 - TSS region transcription start site region 74256
Gm9132 7 110302001 to 110302832 831 + pseudogene predicted gene 9132
D7Mit328 7 110302821 to 110302932 111 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 328
Sbf2 7 110308013 to 110614922 306909 - protein coding gene SET binding factor 2
Tssr74257 7 110372653 to 110372696 43 - TSS region transcription start site region 74257
Tssr74258 7 110372712 to 110372724 12 - TSS region transcription start site region 74258
Gm9064 7 110425070 to 110425602 532 + pseudogene predicted gene 9064
Tssr74259 7 110464634 to 110464667 33 - TSS region transcription start site region 74259
Gm17219 7 110522066 to 110522658 592 + pseudogene predicted gene 17219
Gm10087 7 110526792 to 110527121 329 + pseudogene predicted gene 10087
Gm46027 7 110598953 to 110602925 3972 - lncRNA gene predicted gene, 46027
Tssr74260 7 110611659 to 110611662 3 - TSS region transcription start site region 74260
Cpgi19574 7 110614042 to 110615520 1478 CpG island CpG island 19574
Tssr68499 7 110614331 to 110614351 20 + TSS region transcription start site region 68499
Tssr74261 7 110614888 to 110614928 40 - TSS region transcription start site region 74261
Cpgi19575 7 110626252 to 110626613 361 CpG island CpG island 19575
Gm28863 7 110626281 to 110639358 13077 - antisense lncRNA gene predicted gene 28863
Cpgi19576 7 110627486 to 110627790 304 CpG island CpG island 19576
Tssr68500 7 110627650 to 110627666 16 + TSS region transcription start site region 68500
Adm 7 110627669 to 110629819 2150 + protein coding gene adrenomedullin
Cpgi19577 7 110627935 to 110629272 1337 CpG island CpG island 19577
Tssr68501 7 110628534 to 110628545 11 + TSS region transcription start site region 68501
Tssr68502 7 110629526 to 110629531 5 + TSS region transcription start site region 68502
Cpgi19578 7 110630305 to 110630803 498 CpG island CpG island 19578
Tssr74262 7 110648729 to 110648738 9 - TSS region transcription start site region 74262
Tssr74263 7 110648766 to 110648784 18 - TSS region transcription start site region 74263
Tssr74264 7 110648817 to 110648833 16 - TSS region transcription start site region 74264
Gm21123 7 110690163 to 110699732 9569 - lincRNA gene predicted gene, 21123
Gm18907 7 110712972 to 110713492 520 - pseudogene predicted gene, 18907