Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:109698690-109965679

48 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
St5	7	109523911 to 109703605	179694	-	protein coding gene	suppression of tumorigenicity 5
Gm44864	7	109699525 to 109703608	4083	+	antisense lncRNA gene	predicted gene 44864
Cpgi19561	7	109703222 to 109704316	1094		CpG island	CpG island 19561
Tssr74211	7	109703563 to 109703574	11	-	TSS region	transcription start site region 74211
Tssr74212	7	109703582 to 109703621	39	-	TSS region	transcription start site region 74212
Tssr68473	7	109703672 to 109703759	87	+	TSS region	transcription start site region 68473
Akip1	7	109703690 to 109712189	8499	+	protein coding gene	A kinase (PRKA) interacting protein 1
BC051019	7	109712181 to 109723850	11669	-	protein coding gene	cDNA sequence BC051019
Tssr74213	7	109723844 to 109723855	11	-	TSS region	transcription start site region 74213
Tssr74214	7	109723860 to 109723889	29	-	TSS region	transcription start site region 74214
Ascl3	7	109727465 to 109731726	4261	-	protein coding gene	achaete-scute family bHLH transcription factor 3
Cpgi19562	7	109727696 to 109728014	318		CpG island	CpG island 19562
Tssr74215	7	109731708 to 109731715	7	-	TSS region	transcription start site region 74215
Tmem9b	7	109735836 to 109752263	16427	-	protein coding gene	TMEM9 domain family, member B
Cpgi19563	7	109751840 to 109752815	975		CpG island	CpG island 19563
Tssr74216	7	109752193 to 109752208	15	-	TSS region	transcription start site region 74216
Tssr74217	7	109752210 to 109752290	80	-	TSS region	transcription start site region 74217
Tssr68474	7	109752307 to 109752342	35	+	TSS region	transcription start site region 68474
4930431P19Rik	7	109752320 to 109755278	2958	+	pseudogene	RIKEN cDNA 4930431P19 gene
Nrip3	7	109758056 to 109781545	23489	-	protein coding gene	nuclear receptor interacting protein 3
Tssr74218	7	109759341 to 109759348	7	-	TSS region	transcription start site region 74218
Tssr74219	7	109760208 to 109760213	5	-	TSS region	transcription start site region 74219
D7Mill13	7	109761607 to 109761831	224		DNA segment	DNA segment, Chr 7, Millennium Pharmaceuticals Inc 13
Gm22822	7	109774612 to 109774718	106	-	snRNA gene	predicted gene, 22822
Cpgi19564	7	109781085 to 109782176	1091		CpG island	CpG island 19564
Tssr74220	7	109781538 to 109781554	16	-	TSS region	transcription start site region 74220
D7Mit130	7	109788134 to 109788282	148		DNA segment	DNA segment, Chr 7, Massachusetts Institute of Technology 130
Tssr2366	7	109798672 to 109798678	6	+	TSS region	transcription start site region 2366
Scube2	7	109798690 to 109865679	66989	-	protein coding gene	signal peptide, CUB domain, EGF-like 2
Tssr74221	7	109807955 to 109807962	7	-	TSS region	transcription start site region 74221
Tssr74222	7	109807979 to 109807998	19	-	TSS region	transcription start site region 74222
Tssr74223	7	109808240 to 109808251	11	-	TSS region	transcription start site region 74223
Tssr74224	7	109840888 to 109840896	8	-	TSS region	transcription start site region 74224
Tssr74225	7	109840904 to 109840907	3	-	TSS region	transcription start site region 74225
Tssr74226	7	109840912 to 109840922	10	-	TSS region	transcription start site region 74226
Cpgi19565	7	109865094 to 109866117	1023		CpG island	CpG island 19565
Tssr74227	7	109865637 to 109865652	15	-	TSS region	transcription start site region 74227
D7Ertd344e	7	109893026 to 109893245	219		DNA segment	DNA segment, Chr 7, ERATO Doi 344, expressed
Dennd5a	7	109893780 to 109960470	66690	-	protein coding gene	DENN/MADD domain containing 5A
Tssr74228	7	109894010 to 109894027	17	-	TSS region	transcription start site region 74228
Tssr74229	7	109927337 to 109927340	3	-	TSS region	transcription start site region 74229
Tssr68475	7	109958274 to 109958279	5	+	TSS region	transcription start site region 68475
Cpgi19566	7	109959609 to 109960843	1234		CpG island	CpG island 19566
Tssr74230	7	109960121 to 109960128	7	-	TSS region	transcription start site region 74230
Tssr74231	7	109960207 to 109960218	11	-	TSS region	transcription start site region 74231
Tssr74232	7	109960385 to 109960433	48	-	TSS region	transcription start site region 74232
Tssr74233	7	109960461 to 109960477	16	-	TSS region	transcription start site region 74233
Tssr74234	7	109960497 to 109960504	7	-	TSS region	transcription start site region 74234