Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:109004616-109574776

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi19553 7 109010463 to 109011592 1129 CpG island CpG island 19553
Tssr2363 7 109010827 to 109010835 8 + TSS region transcription start site region 2363
Tssr68464 7 109010842 to 109010845 3 + TSS region transcription start site region 68464
Tssr68465 7 109010850 to 109010930 80 + TSS region transcription start site region 68465
Tub 7 109010880 to 109034459 23579 + protein coding gene tubby bipartite transcription factor
Ric3 7 109034312 to 109083331 49019 - protein coding gene RIC3 acetylcholine receptor chaperone
Gm25450 7 109076136 to 109076242 106 - snRNA gene predicted gene, 25450
D7Mill3 7 109076458 to 109076585 127 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 3
Cpgi19554 7 109082946 to 109083580 634 CpG island CpG island 19554
Tssr74170 7 109083284 to 109083337 53 - TSS region transcription start site region 74170
D7Mit219 7 109096065 to 109096188 123 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 219
Lmo1 7 109138572 to 109175207 36635 - protein coding gene LIM domain only 1
Gm44781 7 109142887 to 109146604 3717 + antisense lncRNA gene predicted gene 44781
D7Mill4 7 109165463 to 109165710 247 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 4
Cpgi19555 7 109169254 to 109170224 970 CpG island CpG island 19555
Tssr74171 7 109170044 to 109170064 20 - TSS region transcription start site region 74171
Tssr74172 7 109170529 to 109170557 28 - TSS region transcription start site region 74172
Cpgi19556 7 109174430 to 109175972 1542 CpG island CpG island 19556
Tssr74173 7 109175115 to 109175126 11 - TSS region transcription start site region 74173
Tssr74174 7 109175130 to 109175171 41 - TSS region transcription start site region 74174
Tssr74175 7 109175313 to 109175356 43 - TSS region transcription start site region 74175
Tssr74176 7 109175358 to 109175369 11 - TSS region transcription start site region 74176
D7Mit325 7 109200103 to 109200202 99 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 325
Gm45024 7 109208301 to 109224200 15899 - lincRNA gene predicted gene 45024
D7Mit280 7 109230147 to 109230254 107 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 280
Cpgi19557 7 109241343 to 109241552 209 CpG island CpG island 19557
Gm32563 7 109252932 to 109256986 4054 + lncRNA gene predicted gene, 32563
Stk33 7 109279223 to 109439081 159858 - protein coding gene serine/threonine kinase 33
D7Mill5 7 109284527 to 109284719 192 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 5
D7Mill6 7 109289616 to 109289776 160 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 6
D7Mit63 7 109345223 to 109345370 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 63
D7Mit236 7 109346720 to 109346849 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 236
Tssr2364 7 109384867 to 109384869 2 + TSS region transcription start site region 2364
Gm9105 7 109387478 to 109388875 1397 - pseudogene predicted gene 9105
D7Mill7 7 109437324 to 109437554 230 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 7
1700095J03Rik 7 109438618 to 109444893 6275 + antisense lncRNA gene RIKEN cDNA 1700095J03 gene
Cpgi19558 7 109438716 to 109439530 814 CpG island CpG island 19558
Tssr74177 7 109438786 to 109438837 51 - TSS region transcription start site region 74177
Tssr74178 7 109438998 to 109439017 19 - TSS region transcription start site region 74178
Tssr74179 7 109439025 to 109439066 41 - TSS region transcription start site region 74179
Tssr74180 7 109439076 to 109439083 7 - TSS region transcription start site region 74180
Tssr68466 7 109439126 to 109439137 11 + TSS region transcription start site region 68466
Tssr68467 7 109439157 to 109439165 8 + TSS region transcription start site region 68467
Tssr68468 7 109439192 to 109439203 11 + TSS region transcription start site region 68468
Tssr68469 7 109439227 to 109439241 14 + TSS region transcription start site region 68469
Trim66 7 109449006 to 109508134 59128 - protein coding gene tripartite motif-containing 66
Tssr74181 7 109456627 to 109456658 31 - TSS region transcription start site region 74181
Tssr2365 7 109457993 to 109457996 3 + TSS region transcription start site region 2365
D7Mill8 7 109463515 to 109463729 214 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 8
Tssr74182 7 109493627 to 109493641 14 - TSS region transcription start site region 74182
Tssr74183 7 109494037 to 109494067 30 - TSS region transcription start site region 74183
4933428C20Rik 7 109494096 to 109495112 1016 unclassified gene RIKEN cDNA 4933428C20 gene
Tssr74184 7 109516686 to 109516723 37 - TSS region transcription start site region 74184
Cpgi19559 7 109518696 to 109519911 1215 CpG island CpG island 19559
Tssr74185 7 109518965 to 109519027 62 - TSS region transcription start site region 74185
Tssr68470 7 109519139 to 109519242 103 + TSS region transcription start site region 68470
Rpl27a 7 109519195 to 109522369 3174 + protein coding gene ribosomal protein L27A
Snora3 7 109520132 to 109520251 119 + snoRNA gene small nucleolar RNA, H/ACA box 3
Tssr68471 7 109521087 to 109521090 3 + TSS region transcription start site region 68471
Gm47284 7 109521249 to 109521368 119 + miRNA gene predicted gene, 47284
Gm24888 7 109521280 to 109521409 129 + snoRNA gene predicted gene, 24888
St5 7 109523911 to 109703605 179694 - protein coding gene suppression of tumorigenicity 5
Tssr74186 7 109524181 to 109524201 20 - TSS region transcription start site region 74186
Tssr74187 7 109525706 to 109525715 9 - TSS region transcription start site region 74187
Tssr74188 7 109525742 to 109525757 15 - TSS region transcription start site region 74188
Tssr74189 7 109534857 to 109534868 11 - TSS region transcription start site region 74189
Tssr74190 7 109545280 to 109545299 19 - TSS region transcription start site region 74190
D7Mill9 7 109547507 to 109547741 234 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 9
Tssr74191 7 109557467 to 109557468 1 - TSS region transcription start site region 74191