Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:108490358-109860369

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Olfr501-ps1 7 108508058 to 108509000 942 + polymorphic pseudogene olfactory receptor 501, pseudogene 1
Olfr502 7 108523004 to 108523948 944 - protein coding gene olfactory receptor 502
Gm5053 7 108527727 to 108529070 1343 - pseudogene predicted gene 5053
Olfr503 7 108544527 to 108545498 971 + protein coding gene olfactory receptor 503
Olfr504 7 108564837 to 108565793 956 - protein coding gene olfactory receptor 504
Gm18410 7 108566250 to 108566826 576 - pseudogene predicted gene, 18410
Gm44865 7 108566845 to 108567375 530 + pseudogene predicted gene 44865
Olfr505-ps1 7 108574524 to 108575385 861 + pseudogene olfactory receptor 505, pseudogene 1
Gm19127 7 108579038 to 108581482 2444 - pseudogene predicted gene, 19127
Olfr506 7 108612309 to 108613253 944 + protein coding gene olfactory receptor 506
Olfr507 7 108621814 to 108622764 950 + protein coding gene olfactory receptor 507
Olfr508 7 108629994 to 108630926 932 + protein coding gene olfactory receptor 508
Olfr509 7 108645609 to 108646574 965 - protein coding gene olfactory receptor 509
Olfr510 7 108666424 to 108668362 1938 + protein coding gene olfactory receptor 510
Olfr511-ps1 7 108696201 to 108696417 216 + pseudogene olfactory receptor 511, pseudogene 1
Olfr512 7 108713355 to 108714335 980 + protein coding gene olfactory receptor 512
Olfr513 7 108754858 to 108755787 929 + protein coding gene olfactory receptor 513
Gm45232 7 108795003 to 108795164 161 + pseudogene predicted gene 45232
Tssr68455 7 108804485 to 108804489 4 + TSS region transcription start site region 68455
Olfr514 7 108825065 to 108825997 932 - protein coding gene olfactory receptor 514
Olfr515-ps1 7 108843304 to 108843492 188 - pseudogene olfactory receptor 515, pseudogene 1
Olfr516 7 108845064 to 108846008 944 - protein coding gene olfactory receptor 516
Gm17992 7 108865424 to 108866495 1071 + pseudogene predicted gene, 17992
Olfr517 7 108868208 to 108869152 944 - protein coding gene olfactory receptor 517
Olfr518 7 108880603 to 108881604 1001 - protein coding gene olfactory receptor 518
Lskcn2 7 108883789 to 119094307 10210518 QTL LSK cell number 2
Skull10 7 108883789 to 108883949 160 QTL skull morphology 10
D7Mit17 7 108883789 to 108883949 160 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 17
Nba3 7 108883789 to 108883949 160 QTL New Zealand Black autoimmunity 3
Olfr519 7 108893461 to 108894405 944 - protein coding gene olfactory receptor 519
Nlrp10 7 108921853 to 108930158 8305 - protein coding gene NLR family, pyrin domain containing 10
Tssr74167 7 108924391 to 108924395 4 - TSS region transcription start site region 74167
Tssr74168 7 108930151 to 108930164 13 - TSS region transcription start site region 74168
Tssr74169 7 108930168 to 108930183 15 - TSS region transcription start site region 74169
D7Mit127 7 108932735 to 108932934 199 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 127
Cpgi19551 7 108934266 to 108934909 643 CpG island CpG island 19551
Tssr68456 7 108934405 to 108934430 25 + TSS region transcription start site region 68456
Eif3f 7 108934415 to 108941942 7527 + protein coding gene eukaryotic translation initiation factor 3, subunit F
Tssr68457 7 108934517 to 108934528 11 + TSS region transcription start site region 68457
Tssr68458 7 108938036 to 108938063 27 + TSS region transcription start site region 68458
Tssr68459 7 108938067 to 108938091 24 + TSS region transcription start site region 68459
Tssr68460 7 108938469 to 108938488 19 + TSS region transcription start site region 68460
Cpgi19552 7 108950177 to 108951474 1297 CpG island CpG island 19552
Tssr68461 7 108950472 to 108950485 13 + TSS region transcription start site region 68461
Tssr68462 7 108950628 to 108950679 51 + TSS region transcription start site region 68462
BC049265 7 108950656 to 108961534 10878 unclassified gene cDNA sequence BC049265
Tssr68463 7 108950697 to 108950703 6 + TSS region transcription start site region 68463
Gm26599 7 108950754 to 108961535 10781 - lincRNA gene predicted gene, 26599
Gm39067 7 108954159 to 108955256 1097 - lncRNA gene predicted gene, 39067
Gm32309 7 108969683 to 108992084 22401 - lncRNA gene predicted gene, 32309
Cpgi19553 7 109010463 to 109011592 1129 CpG island CpG island 19553
Tssr2363 7 109010827 to 109010835 8 + TSS region transcription start site region 2363
Tssr68464 7 109010842 to 109010845 3 + TSS region transcription start site region 68464
Tssr68465 7 109010850 to 109010930 80 + TSS region transcription start site region 68465
Tub 7 109010880 to 109034459 23579 + protein coding gene tubby bipartite transcription factor
Ric3 7 109034312 to 109083331 49019 - protein coding gene RIC3 acetylcholine receptor chaperone
Gm25450 7 109076136 to 109076242 106 - snRNA gene predicted gene, 25450
D7Mill3 7 109076458 to 109076585 127 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 3
Cpgi19554 7 109082946 to 109083580 634 CpG island CpG island 19554
Tssr74170 7 109083284 to 109083337 53 - TSS region transcription start site region 74170
D7Mit219 7 109096065 to 109096188 123 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 219
Lmo1 7 109138572 to 109175207 36635 - protein coding gene LIM domain only 1
Gm44781 7 109142887 to 109146604 3717 + antisense lncRNA gene predicted gene 44781
D7Mill4 7 109165463 to 109165710 247 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 4
Cpgi19555 7 109169254 to 109170224 970 CpG island CpG island 19555
Tssr74171 7 109170044 to 109170064 20 - TSS region transcription start site region 74171
Tssr74172 7 109170529 to 109170557 28 - TSS region transcription start site region 74172
Cpgi19556 7 109174430 to 109175972 1542 CpG island CpG island 19556
Tssr74173 7 109175115 to 109175126 11 - TSS region transcription start site region 74173
Tssr74174 7 109175130 to 109175171 41 - TSS region transcription start site region 74174
Tssr74175 7 109175313 to 109175356 43 - TSS region transcription start site region 74175
Tssr74176 7 109175358 to 109175369 11 - TSS region transcription start site region 74176
D7Mit325 7 109200103 to 109200202 99 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 325
Gm45024 7 109208301 to 109224200 15899 - lincRNA gene predicted gene 45024
D7Mit280 7 109230147 to 109230254 107 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 280
Cpgi19557 7 109241343 to 109241552 209 CpG island CpG island 19557
Gm32563 7 109252932 to 109256986 4054 + lncRNA gene predicted gene, 32563
Stk33 7 109279223 to 109439081 159858 - protein coding gene serine/threonine kinase 33
D7Mill5 7 109284527 to 109284719 192 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 5
D7Mill6 7 109289616 to 109289776 160 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 6
D7Mit63 7 109345223 to 109345370 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 63
D7Mit236 7 109346720 to 109346849 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 236
Tssr2364 7 109384867 to 109384869 2 + TSS region transcription start site region 2364
Gm9105 7 109387478 to 109388875 1397 - pseudogene predicted gene 9105
D7Mill7 7 109437324 to 109437554 230 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 7
1700095J03Rik 7 109438618 to 109444893 6275 + antisense lncRNA gene RIKEN cDNA 1700095J03 gene
Cpgi19558 7 109438716 to 109439530 814 CpG island CpG island 19558
Tssr74177 7 109438786 to 109438837 51 - TSS region transcription start site region 74177
Tssr74178 7 109438998 to 109439017 19 - TSS region transcription start site region 74178
Tssr74179 7 109439025 to 109439066 41 - TSS region transcription start site region 74179
Tssr74180 7 109439076 to 109439083 7 - TSS region transcription start site region 74180
Tssr68466 7 109439126 to 109439137 11 + TSS region transcription start site region 68466
Tssr68467 7 109439157 to 109439165 8 + TSS region transcription start site region 68467
Tssr68468 7 109439192 to 109439203 11 + TSS region transcription start site region 68468
Tssr68469 7 109439227 to 109439241 14 + TSS region transcription start site region 68469
Trim66 7 109449006 to 109508134 59128 - protein coding gene tripartite motif-containing 66
Tssr74181 7 109456627 to 109456658 31 - TSS region transcription start site region 74181
Tssr2365 7 109457993 to 109457996 3 + TSS region transcription start site region 2365
D7Mill8 7 109463515 to 109463729 214 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 8
Tssr74182 7 109493627 to 109493641 14 - TSS region transcription start site region 74182
Tssr74183 7 109494037 to 109494067 30 - TSS region transcription start site region 74183
4933428C20Rik 7 109494096 to 109495112 1016 unclassified gene RIKEN cDNA 4933428C20 gene
Tssr74184 7 109516686 to 109516723 37 - TSS region transcription start site region 74184
Cpgi19559 7 109518696 to 109519911 1215 CpG island CpG island 19559
Tssr74185 7 109518965 to 109519027 62 - TSS region transcription start site region 74185
Tssr68470 7 109519139 to 109519242 103 + TSS region transcription start site region 68470
Rpl27a 7 109519195 to 109522369 3174 + protein coding gene ribosomal protein L27A
Snora3 7 109520132 to 109520251 119 + snoRNA gene small nucleolar RNA, H/ACA box 3
Tssr68471 7 109521087 to 109521090 3 + TSS region transcription start site region 68471
Gm47284 7 109521249 to 109521368 119 + miRNA gene predicted gene, 47284
Gm24888 7 109521280 to 109521409 129 + snoRNA gene predicted gene, 24888
St5 7 109523911 to 109703605 179694 - protein coding gene suppression of tumorigenicity 5
Tssr74186 7 109524181 to 109524201 20 - TSS region transcription start site region 74186
Tssr74187 7 109525706 to 109525715 9 - TSS region transcription start site region 74187
Tssr74188 7 109525742 to 109525757 15 - TSS region transcription start site region 74188
Tssr74189 7 109534857 to 109534868 11 - TSS region transcription start site region 74189
Tssr74190 7 109545280 to 109545299 19 - TSS region transcription start site region 74190
D7Mill9 7 109547507 to 109547741 234 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 9
Tssr74191 7 109557467 to 109557468 1 - TSS region transcription start site region 74191
Tssr74192 7 109600782 to 109600784 2 - TSS region transcription start site region 74192
Tssr74193 7 109602625 to 109602637 12 - TSS region transcription start site region 74193
Tssr74194 7 109602652 to 109602709 57 - TSS region transcription start site region 74194
Tssr74195 7 109602742 to 109602747 5 - TSS region transcription start site region 74195
Tssr74196 7 109609225 to 109609229 4 - TSS region transcription start site region 74196
Tssr68472 7 109610263 to 109610302 39 + TSS region transcription start site region 68472
Tssr74197 7 109616332 to 109616345 13 - TSS region transcription start site region 74197
Tssr74198 7 109616350 to 109616374 24 - TSS region transcription start site region 74198
Tssr74199 7 109616404 to 109616487 83 - TSS region transcription start site region 74199
Tssr74200 7 109616548 to 109616616 68 - TSS region transcription start site region 74200
Tssr74201 7 109616795 to 109616819 24 - TSS region transcription start site region 74201
Tssr74202 7 109628021 to 109628025 4 - TSS region transcription start site region 74202
D7Mill10 7 109630865 to 109631071 206 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 10
Tssr74203 7 109637379 to 109637407 28 - TSS region transcription start site region 74203
Tssr74204 7 109637422 to 109637436 14 - TSS region transcription start site region 74204
Tssr74205 7 109637494 to 109637510 16 - TSS region transcription start site region 74205
Tssr74206 7 109637606 to 109637620 14 - TSS region transcription start site region 74206
Tssr74207 7 109665696 to 109665699 3 - TSS region transcription start site region 74207
Cpgi19560 7 109671514 to 109672050 536 CpG island CpG island 19560
Tssr74208 7 109671940 to 109671961 21 - TSS region transcription start site region 74208
Tssr74209 7 109671964 to 109671992 28 - TSS region transcription start site region 74209
Tssr74210 7 109672229 to 109672248 19 - TSS region transcription start site region 74210
Gm44864 7 109699525 to 109703608 4083 + antisense lncRNA gene predicted gene 44864
Cpgi19561 7 109703222 to 109704316 1094 CpG island CpG island 19561
Tssr74211 7 109703563 to 109703574 11 - TSS region transcription start site region 74211
Tssr74212 7 109703582 to 109703621 39 - TSS region transcription start site region 74212
Tssr68473 7 109703672 to 109703759 87 + TSS region transcription start site region 68473
Akip1 7 109703690 to 109712189 8499 + protein coding gene A kinase (PRKA) interacting protein 1
BC051019 7 109712181 to 109723850 11669 - protein coding gene cDNA sequence BC051019
Tssr74213 7 109723844 to 109723855 11 - TSS region transcription start site region 74213
Tssr74214 7 109723860 to 109723889 29 - TSS region transcription start site region 74214
Ascl3 7 109727465 to 109731726 4261 - protein coding gene achaete-scute family bHLH transcription factor 3
Cpgi19562 7 109727696 to 109728014 318 CpG island CpG island 19562
Tssr74215 7 109731708 to 109731715 7 - TSS region transcription start site region 74215
Tmem9b 7 109735836 to 109752263 16427 - protein coding gene TMEM9 domain family, member B
Cpgi19563 7 109751840 to 109752815 975 CpG island CpG island 19563
Tssr74216 7 109752193 to 109752208 15 - TSS region transcription start site region 74216
Tssr74217 7 109752210 to 109752290 80 - TSS region transcription start site region 74217
Tssr68474 7 109752307 to 109752342 35 + TSS region transcription start site region 68474
4930431P19Rik 7 109752320 to 109755278 2958 + pseudogene RIKEN cDNA 4930431P19 gene
Nrip3 7 109758056 to 109781545 23489 - protein coding gene nuclear receptor interacting protein 3
Tssr74218 7 109759341 to 109759348 7 - TSS region transcription start site region 74218
Tssr74219 7 109760208 to 109760213 5 - TSS region transcription start site region 74219
D7Mill13 7 109761607 to 109761831 224 DNA segment DNA segment, Chr 7, Millennium Pharmaceuticals Inc 13
Gm22822 7 109774612 to 109774718 106 - snRNA gene predicted gene, 22822
Cpgi19564 7 109781085 to 109782176 1091 CpG island CpG island 19564
Tssr74220 7 109781538 to 109781554 16 - TSS region transcription start site region 74220
D7Mit130 7 109788134 to 109788282 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 130
Tssr2366 7 109798672 to 109798678 6 + TSS region transcription start site region 2366
Scube2 7 109798690 to 109865679 66989 - protein coding gene signal peptide, CUB domain, EGF-like 2
Tssr74221 7 109807955 to 109807962 7 - TSS region transcription start site region 74221
Tssr74222 7 109807979 to 109807998 19 - TSS region transcription start site region 74222
Tssr74223 7 109808240 to 109808251 11 - TSS region transcription start site region 74223
Tssr74224 7 109840888 to 109840896 8 - TSS region transcription start site region 74224
Tssr74225 7 109840904 to 109840907 3 - TSS region transcription start site region 74225
Tssr74226 7 109840912 to 109840922 10 - TSS region transcription start site region 74226