Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:105631568-106363337

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim3 7 105604463 to 105633571 29108 - protein coding gene tripartite motif-containing 3
Cpgi19540 7 105632934 to 105633998 1064 CpG island CpG island 19540
Tssr74079 7 105633433 to 105633442 9 - TSS region transcription start site region 74079
Tssr74080 7 105633460 to 105633477 17 - TSS region transcription start site region 74080
Tssr74081 7 105633479 to 105633521 42 - TSS region transcription start site region 74081
Tssr74082 7 105633525 to 105633601 76 - TSS region transcription start site region 74082
Arfip2 7 105634203 to 105640416 6213 - protein coding gene ADP-ribosylation factor interacting protein 2
Timm10b 7 105640056 to 105643637 3581 + protein coding gene translocase of inner mitochondrial membrane 10B
Cpgi19541 7 105640084 to 105641221 1137 CpG island CpG island 19541
Tssr74083 7 105640317 to 105640370 53 - TSS region transcription start site region 74083
Tssr2358 7 105640416 to 105640421 5 + TSS region transcription start site region 2358
Tssr68382 7 105640463 to 105640514 51 + TSS region transcription start site region 68382
Tssr68383 7 105640522 to 105640586 64 + TSS region transcription start site region 68383
Gm45799 7 105640552 to 105684439 43887 + protein coding gene predicted gene 45799
Tssr68384 7 105640783 to 105640809 26 + TSS region transcription start site region 68384
Tssr68385 7 105640996 to 105641027 31 + TSS region transcription start site region 68385
Tssr68386 7 105641052 to 105641070 18 + TSS region transcription start site region 68386
Tssr68387 7 105642337 to 105642342 5 + TSS region transcription start site region 68387
Gm22504 7 105642338 to 105642476 138 - snoRNA gene predicted gene, 22504
Tssr68388 7 105642615 to 105642622 7 + TSS region transcription start site region 68388
Tssr68389 7 105648203 to 105648206 3 + TSS region transcription start site region 68389
Tssr68390 7 105650769 to 105650798 29 + TSS region transcription start site region 68390
Tssr68391 7 105650813 to 105650833 20 + TSS region transcription start site region 68391
Dnhd1 7 105650827 to 105721799 70972 + protein coding gene dynein heavy chain domain 1
Mrps36-ps2 7 105690259 to 105690567 308 - pseudogene mitochondrial ribosomal protein S36, pseudogene 2
Rrp8 7 105731730 to 105737385 5655 - protein coding gene ribosomal RNA processing 8, methyltransferase, homolog (yeast)
Cpgi19542 7 105736100 to 105737398 1298 CpG island CpG island 19542
Tssr74084 7 105736390 to 105736404 14 - TSS region transcription start site region 74084
Tssr74085 7 105736426 to 105736441 15 - TSS region transcription start site region 74085
Tssr74086 7 105736447 to 105736488 41 - TSS region transcription start site region 74086
Tssr74087 7 105736490 to 105736534 44 - TSS region transcription start site region 74087
Tssr68392 7 105736565 to 105736589 24 + TSS region transcription start site region 68392
Ilk 7 105736592 to 105742925 6333 + protein coding gene integrin linked kinase
Tssr68393 7 105736644 to 105736698 54 + TSS region transcription start site region 68393
Tssr68394 7 105736702 to 105736735 33 + TSS region transcription start site region 68394
Tssr68395 7 105736746 to 105736764 18 + TSS region transcription start site region 68395
Tssr68396 7 105736776 to 105736785 9 + TSS region transcription start site region 68396
Tssr68397 7 105736884 to 105736908 24 + TSS region transcription start site region 68397
Tssr74088 7 105737238 to 105737275 37 - TSS region transcription start site region 74088
Tssr74089 7 105737291 to 105737313 22 - TSS region transcription start site region 74089
Tssr74090 7 105737339 to 105737398 59 - TSS region transcription start site region 74090
Tssr74091 7 105739139 to 105739143 4 - TSS region transcription start site region 74091
Tssr68398 7 105740280 to 105740295 15 + TSS region transcription start site region 68398
Tssr68399 7 105742522 to 105742538 16 + TSS region transcription start site region 68399
Tssr68400 7 105742543 to 105742560 17 + TSS region transcription start site region 68400
Taf10 7 105742894 to 105744379 1485 - protein coding gene TATA-box binding protein associated factor 10
Cpgi19543 7 105743511 to 105744700 1189 CpG island CpG island 19543
Tssr74092 7 105743925 to 105743947 22 - TSS region transcription start site region 74092
Tssr74093 7 105744312 to 105744358 46 - TSS region transcription start site region 74093
Tpp1 7 105744811 to 105752235 7424 - protein coding gene tripeptidyl peptidase I
Tssr74094 7 105745669 to 105745690 21 - TSS region transcription start site region 74094
Tssr74095 7 105745765 to 105745781 16 - TSS region transcription start site region 74095
Tssr74096 7 105746473 to 105746496 23 - TSS region transcription start site region 74096
Tssr74097 7 105746503 to 105746530 27 - TSS region transcription start site region 74097
Tssr74098 7 105746534 to 105746587 53 - TSS region transcription start site region 74098
Tssr74099 7 105746599 to 105746619 20 - TSS region transcription start site region 74099
Tssr74100 7 105746668 to 105746690 22 - TSS region transcription start site region 74100
Tssr74101 7 105747771 to 105747787 16 - TSS region transcription start site region 74101
Tssr74102 7 105749681 to 105749714 33 - TSS region transcription start site region 74102
Tssr74103 7 105750266 to 105750300 34 - TSS region transcription start site region 74103
D7Mit95 7 105751411 to 105751503 92 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 95
Tssr2359 7 105752010 to 105752027 17 - TSS region transcription start site region 2359
Tssr74104 7 105752193 to 105752234 41 - TSS region transcription start site region 74104
Dchs1 7 105752990 to 105787654 34664 - protein coding gene dachsous cadherin related 1
Cpgi19544 7 105761809 to 105763050 1241 CpG island CpG island 19544
Cpgi19545 7 105786824 to 105788072 1248 CpG island CpG island 19545
Tssr74105 7 105787483 to 105787494 11 - TSS region transcription start site region 74105
Tssr74106 7 105787506 to 105787523 17 - TSS region transcription start site region 74106
Tssr74107 7 105787544 to 105787555 11 - TSS region transcription start site region 74107
Tssr74108 7 105787567 to 105787639 72 - TSS region transcription start site region 74108
D7Mit302 7 105794470 to 105794615 145 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 302
Mrpl17 7 105803782 to 105811087 7305 - protein coding gene mitochondrial ribosomal protein L17
Cpgi19546 7 105810417 to 105811454 1037 CpG island CpG island 19546
Tssr74109 7 105810947 to 105811095 148 - TSS region transcription start site region 74109
Gm45912 7 105823264 to 105823806 542 - unclassified gene predicted gene 45912
9130208D14Rik 7 105824223 to 105831515 7292 - pseudogene RIKEN cDNA 9130208D14 gene
Gm15645 7 105861781 to 105863327 1546 + pseudogene predicted gene 15645
Gm45684 7 105885296 to 105886866 1570 - unclassified gene predicted gene 45684
Gm4070 7 105895139 to 105953967 58828 - protein coding gene predicted gene 4070
Gm20663 7 105901568 to 106093337 191769 + antisense lncRNA gene predicted gene 20663
Gm18852 7 105925000 to 105928592 3592 - pseudogene predicted gene, 18852
Gm27228 7 106038167 to 106039204 1037 - pseudogene predicted gene 27228
Gm8979 7 106075731 to 106079148 3417 - pseudogene predicted gene 8979
Gm27149 7 106091210 to 106092475 1265 - pseudogene predicted gene 27149
Tssr74110 7 106117300 to 106117324 24 - TSS region transcription start site region 74110
Gm8982 7 106123187 to 106124727 1540 + pseudogene predicted gene 8982
Gvin1 7 106156556 to 106215326 58770 - protein coding gene GTPase, very large interferon inducible 1
Gm18853 7 106186404 to 106189999 3595 - pseudogene predicted gene, 18853
Tssr2360 7 106264062 to 106264072 10 + TSS region transcription start site region 2360
Gm27150 7 106286445 to 106287482 1037 - pseudogene predicted gene 27150
Gm8989 7 106322396 to 106324528 2132 - pseudogene predicted gene 8989
Tssr74111 7 106352674 to 106352688 14 - TSS region transcription start site region 74111