Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 7:100499117-100657996

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62 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ucp2 7 100493358 to 100499629 6271 + protein coding gene uncoupling protein 2 (mitochondrial, proton carrier)
Tssr68149 7 100499228 to 100499245 17 + TSS region transcription start site region 68149
Tssr68150 7 100499266 to 100499283 17 + TSS region transcription start site region 68150
Tssr68151 7 100499298 to 100499316 18 + TSS region transcription start site region 68151
Tssr68152 7 100499331 to 100499358 27 + TSS region transcription start site region 68152
Tssr68153 7 100499359 to 100499381 22 + TSS region transcription start site region 68153
Tssr73747 7 100499391 to 100499406 15 - TSS region transcription start site region 73747
Tssr73748 7 100499449 to 100499476 27 - TSS region transcription start site region 73748
Tssr73749 7 100499508 to 100499536 28 - TSS region transcription start site region 73749
Dnajb13 7 100503011 to 100514815 11804 - protein coding gene DnaJ heat shock protein family (Hsp40) member B13
Stmm1 7 100505707 to 107683208 7177501 QTL skin tumor modifier of MSM 1
D7Mit96 7 100505707 to 100505782 75 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 96
D7Dcr43 7 100505709 to 100505800 91 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 43
Tssr73750 7 100511780 to 100511801 21 - TSS region transcription start site region 73750
Tssr73751 7 100514763 to 100514785 22 - TSS region transcription start site region 73751
Tssr73752 7 100514789 to 100514799 10 - TSS region transcription start site region 73752
Tssr73753 7 100514800 to 100514822 22 - TSS region transcription start site region 73753
Tssr68154 7 100523985 to 100523997 12 + TSS region transcription start site region 68154
Gm8463 7 100524016 to 100524628 612 + pseudogene predicted gene 8463
Tssr73754 7 100533459 to 100533481 22 - TSS region transcription start site region 73754
Gm39058 7 100535591 to 100536980 1389 - lncRNA gene predicted gene, 39058
Cpgi19485 7 100536863 to 100537324 461 CpG island CpG island 19485
Tssr68155 7 100537052 to 100537139 87 + TSS region transcription start site region 68155
Coa4 7 100537100 to 100540372 3272 + protein coding gene cytochrome c oxidase assembly factor 4
Tssr68156 7 100537170 to 100537179 9 + TSS region transcription start site region 68156
Tssr68157 7 100537192 to 100537221 29 + TSS region transcription start site region 68157
Tssr73755 7 100539316 to 100539326 10 - TSS region transcription start site region 73755
Tssr73756 7 100539589 to 100539598 9 - TSS region transcription start site region 73756
Tssr68158 7 100539899 to 100539927 28 + TSS region transcription start site region 68158
Gm39059 7 100542338 to 100543180 842 - lncRNA gene predicted gene, 39059
Mrpl48 7 100549117 to 100607996 58879 - protein coding gene mitochondrial ribosomal protein L48
Tssr73757 7 100550745 to 100550754 9 - TSS region transcription start site region 73757
Gm44648 7 100571922 to 100572250 328 + pseudogene predicted gene 44648
Cox20b 7 100580267 to 100580619 352 + pseudogene cytochrome c oxidase assembly protein 20B
Tssr68159 7 100580278 to 100580302 24 + TSS region transcription start site region 68159
Cpgi19486 7 100582715 to 100583183 468 CpG island CpG island 19486
Tssr73758 7 100583072 to 100583124 52 - TSS region transcription start site region 73758
Tssr73759 7 100589945 to 100589993 48 - TSS region transcription start site region 73759
Tssr73760 7 100590852 to 100590862 10 - TSS region transcription start site region 73760
Cpgi19487 7 100607071 to 100608710 1639 CpG island CpG island 19487
Tssr68160 7 100607556 to 100607618 62 + TSS region transcription start site region 68160
Rab6a 7 100607586 to 100641268 33682 + protein coding gene RAB6A, member RAS oncogene family
Tssr73761 7 100607658 to 100607692 34 - TSS region transcription start site region 73761
Tssr68161 7 100607660 to 100607823 163 + TSS region transcription start site region 68161
Tssr68162 7 100607836 to 100607854 18 + TSS region transcription start site region 68162
Tssr68163 7 100607887 to 100607899 12 + TSS region transcription start site region 68163
Tssr68164 7 100607912 to 100607992 80 + TSS region transcription start site region 68164
Tssr73762 7 100608229 to 100608268 39 - TSS region transcription start site region 73762
Tssr73763 7 100608293 to 100608308 15 - TSS region transcription start site region 73763
D930046H04Rik 7 100618772 to 100621256 2484 lncRNA gene RIKEN cDNA D930046H04 gene
Gm14382 7 100624518 to 100624954 436 + pseudogene predicted gene 14382
Tssr68165 7 100639304 to 100639313 9 + TSS region transcription start site region 68165
Tssr68166 7 100640560 to 100640583 23 + TSS region transcription start site region 68166
Plekhb1 7 100643896 to 100662394 18498 - protein coding gene pleckstrin homology domain containing, family B (evectins) member 1
Tssr73764 7 100644918 to 100644931 13 - TSS region transcription start site region 73764
Tssr73765 7 100653396 to 100653401 5 - TSS region transcription start site region 73765
Tssr73766 7 100653951 to 100653965 14 - TSS region transcription start site region 73766
Tssr73767 7 100656831 to 100656834 3 - TSS region transcription start site region 73767
Tssr73768 7 100656857 to 100656868 11 - TSS region transcription start site region 73768
Tssr73769 7 100656893 to 100656914 21 - TSS region transcription start site region 73769
Tssr73770 7 100656916 to 100656942 26 - TSS region transcription start site region 73770
Tssr73771 7 100656959 to 100656985 26 - TSS region transcription start site region 73771