Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:100290707-100720782

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
P4ha3 7 100285520 to 100319699 34179 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III
Tssr68111 7 100319030 to 100319048 18 + TSS region transcription start site region 68111
Tssr68112 7 100319094 to 100319105 11 + TSS region transcription start site region 68112
Tssr68113 7 100319249 to 100319272 23 + TSS region transcription start site region 68113
Tssr68114 7 100319404 to 100319433 29 + TSS region transcription start site region 68114
Ppme1 7 100326737 to 100371896 45159 - protein coding gene protein phosphatase methylesterase 1
Tssr73736 7 100355038 to 100355076 38 - TSS region transcription start site region 73736
Cpgi19482 7 100371587 to 100372498 911 CpG island CpG island 19482
Tssr73737 7 100371773 to 100371788 15 - TSS region transcription start site region 73737
Tssr73738 7 100371889 to 100371988 99 - TSS region transcription start site region 73738
Tssr68115 7 100372051 to 100372084 33 + TSS region transcription start site region 68115
Tssr68116 7 100372092 to 100372101 9 + TSS region transcription start site region 68116
Tssr68117 7 100372224 to 100372383 159 + TSS region transcription start site region 68117
C2cd3 7 100372233 to 100470152 97919 + protein coding gene C2 calcium-dependent domain containing 3
Tssr68118 7 100372388 to 100372424 36 + TSS region transcription start site region 68118
Gm44571 7 100381594 to 100382308 714 + pseudogene predicted gene 44571
Gm37716 7 100458460 to 100459406 946 + unclassified gene predicted gene, 37716
Gm10603 7 100463049 to 100467382 4333 - antisense lncRNA gene predicted gene 10603
Tssr73739 7 100467125 to 100467148 23 - TSS region transcription start site region 73739
Tssr73740 7 100467149 to 100467171 22 - TSS region transcription start site region 73740
Tssr73741 7 100467217 to 100467244 27 - TSS region transcription start site region 73741
Tssr73742 7 100467253 to 100467266 13 - TSS region transcription start site region 73742
Tssr68119 7 100472929 to 100472938 9 + TSS region transcription start site region 68119
Tssr68120 7 100472960 to 100472975 15 + TSS region transcription start site region 68120
Tssr68121 7 100472985 to 100472998 13 + TSS region transcription start site region 68121
Ucp3 7 100472991 to 100486432 13441 + protein coding gene uncoupling protein 3 (mitochondrial, proton carrier)
Tssr68122 7 100473016 to 100473024 8 + TSS region transcription start site region 68122
Cpgi19483 7 100479569 to 100480313 744 CpG island CpG island 19483
Cpgi19484 7 100492718 to 100493710 992 CpG island CpG island 19484
Tssr68123 7 100493319 to 100493324 5 + TSS region transcription start site region 68123
Tssr68124 7 100493349 to 100493370 21 + TSS region transcription start site region 68124
Ucp2 7 100493358 to 100499629 6271 + protein coding gene uncoupling protein 2 (mitochondrial, proton carrier)
Tssr68125 7 100493770 to 100493814 44 + TSS region transcription start site region 68125
Tssr68126 7 100493829 to 100493848 19 + TSS region transcription start site region 68126
Tssr68127 7 100493939 to 100493955 16 + TSS region transcription start site region 68127
Tssr68128 7 100494044 to 100494088 44 + TSS region transcription start site region 68128
Tssr68129 7 100494269 to 100494330 61 + TSS region transcription start site region 68129
Tssr68130 7 100494891 to 100494896 5 + TSS region transcription start site region 68130
Tssr73743 7 100495677 to 100495695 18 - TSS region transcription start site region 73743
Tssr68131 7 100495987 to 100496007 20 + TSS region transcription start site region 68131
Tssr68132 7 100496727 to 100496797 70 + TSS region transcription start site region 68132
Tssr68133 7 100496871 to 100496895 24 + TSS region transcription start site region 68133
Tssr68134 7 100497099 to 100497127 28 + TSS region transcription start site region 68134
Tssr68135 7 100498099 to 100498113 14 + TSS region transcription start site region 68135
Tssr68136 7 100498117 to 100498142 25 + TSS region transcription start site region 68136
Tssr68137 7 100498151 to 100498210 59 + TSS region transcription start site region 68137
Tssr73744 7 100498208 to 100498276 68 - TSS region transcription start site region 73744
Tssr68138 7 100498241 to 100498252 11 + TSS region transcription start site region 68138
Tssr68139 7 100498340 to 100498361 21 + TSS region transcription start site region 68139
Tssr68140 7 100498362 to 100498373 11 + TSS region transcription start site region 68140
Tssr68141 7 100498389 to 100498408 19 + TSS region transcription start site region 68141
Tssr73745 7 100498400 to 100498456 56 - TSS region transcription start site region 73745
Tssr68142 7 100498731 to 100498743 12 + TSS region transcription start site region 68142
Tssr2342 7 100498748 to 100498755 7 + TSS region transcription start site region 2342
Tssr68143 7 100498764 to 100498801 37 + TSS region transcription start site region 68143
Tssr68144 7 100498814 to 100498827 13 + TSS region transcription start site region 68144
Tssr73746 7 100498821 to 100498862 41 - TSS region transcription start site region 73746
Tssr68145 7 100498828 to 100498830 2 + TSS region transcription start site region 68145
Tssr68146 7 100498839 to 100498852 13 + TSS region transcription start site region 68146
Tssr68147 7 100498854 to 100498876 22 + TSS region transcription start site region 68147
Tssr68148 7 100498886 to 100498899 13 + TSS region transcription start site region 68148
Tssr68149 7 100499228 to 100499245 17 + TSS region transcription start site region 68149
Tssr68150 7 100499266 to 100499283 17 + TSS region transcription start site region 68150
Tssr68151 7 100499298 to 100499316 18 + TSS region transcription start site region 68151
Tssr68152 7 100499331 to 100499358 27 + TSS region transcription start site region 68152
Tssr68153 7 100499359 to 100499381 22 + TSS region transcription start site region 68153
Tssr73747 7 100499391 to 100499406 15 - TSS region transcription start site region 73747
Tssr73748 7 100499449 to 100499476 27 - TSS region transcription start site region 73748
Tssr73749 7 100499508 to 100499536 28 - TSS region transcription start site region 73749
Dnajb13 7 100503011 to 100514815 11804 - protein coding gene DnaJ heat shock protein family (Hsp40) member B13
Stmm1 7 100505707 to 107683208 7177501 QTL skin tumor modifier of MSM 1
D7Mit96 7 100505707 to 100505782 75 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 96
D7Dcr43 7 100505709 to 100505800 91 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 43
Tssr73750 7 100511780 to 100511801 21 - TSS region transcription start site region 73750
Tssr73751 7 100514763 to 100514785 22 - TSS region transcription start site region 73751
Tssr73752 7 100514789 to 100514799 10 - TSS region transcription start site region 73752
Tssr73753 7 100514800 to 100514822 22 - TSS region transcription start site region 73753
Tssr68154 7 100523985 to 100523997 12 + TSS region transcription start site region 68154
Gm8463 7 100524016 to 100524628 612 + pseudogene predicted gene 8463
Tssr73754 7 100533459 to 100533481 22 - TSS region transcription start site region 73754
Gm39058 7 100535591 to 100536980 1389 - lncRNA gene predicted gene, 39058
Cpgi19485 7 100536863 to 100537324 461 CpG island CpG island 19485
Tssr68155 7 100537052 to 100537139 87 + TSS region transcription start site region 68155
Coa4 7 100537100 to 100540372 3272 + protein coding gene cytochrome c oxidase assembly factor 4
Tssr68156 7 100537170 to 100537179 9 + TSS region transcription start site region 68156
Tssr68157 7 100537192 to 100537221 29 + TSS region transcription start site region 68157
Tssr73755 7 100539316 to 100539326 10 - TSS region transcription start site region 73755
Tssr73756 7 100539589 to 100539598 9 - TSS region transcription start site region 73756
Tssr68158 7 100539899 to 100539927 28 + TSS region transcription start site region 68158
Gm39059 7 100542338 to 100543180 842 - lincRNA gene predicted gene, 39059
Mrpl48 7 100549117 to 100607996 58879 - protein coding gene mitochondrial ribosomal protein L48
Tssr73757 7 100550745 to 100550754 9 - TSS region transcription start site region 73757
Gm44648 7 100571922 to 100572250 328 + pseudogene predicted gene 44648
Cox20b 7 100580267 to 100580619 352 + pseudogene cytochrome c oxidase assembly protein 20B
Tssr68159 7 100580278 to 100580302 24 + TSS region transcription start site region 68159
Cpgi19486 7 100582715 to 100583183 468 CpG island CpG island 19486
Tssr73758 7 100583072 to 100583124 52 - TSS region transcription start site region 73758
Tssr73759 7 100589945 to 100589993 48 - TSS region transcription start site region 73759
Tssr73760 7 100590852 to 100590862 10 - TSS region transcription start site region 73760
Cpgi19487 7 100607071 to 100608710 1639 CpG island CpG island 19487
Tssr68160 7 100607556 to 100607618 62 + TSS region transcription start site region 68160
Rab6a 7 100607586 to 100641268 33682 + protein coding gene RAB6A, member RAS oncogene family
Tssr73761 7 100607658 to 100607692 34 - TSS region transcription start site region 73761
Tssr68161 7 100607660 to 100607823 163 + TSS region transcription start site region 68161
Tssr68162 7 100607836 to 100607854 18 + TSS region transcription start site region 68162
Tssr68163 7 100607887 to 100607899 12 + TSS region transcription start site region 68163
Tssr68164 7 100607912 to 100607992 80 + TSS region transcription start site region 68164
Tssr73762 7 100608229 to 100608268 39 - TSS region transcription start site region 73762
Tssr73763 7 100608293 to 100608308 15 - TSS region transcription start site region 73763
D930046H04Rik 7 100618772 to 100621256 2484 unclassified non-coding RNA gene RIKEN cDNA D930046H04 gene
Gm14382 7 100624518 to 100624954 436 + pseudogene predicted gene 14382
Tssr68165 7 100639304 to 100639313 9 + TSS region transcription start site region 68165
Tssr68166 7 100640560 to 100640583 23 + TSS region transcription start site region 68166
Plekhb1 7 100643896 to 100662394 18498 - protein coding gene pleckstrin homology domain containing, family B (evectins) member 1
Tssr73764 7 100644918 to 100644931 13 - TSS region transcription start site region 73764
Tssr73765 7 100653396 to 100653401 5 - TSS region transcription start site region 73765
Tssr73766 7 100653951 to 100653965 14 - TSS region transcription start site region 73766
Tssr73767 7 100656831 to 100656834 3 - TSS region transcription start site region 73767
Tssr73768 7 100656857 to 100656868 11 - TSS region transcription start site region 73768
Tssr73769 7 100656893 to 100656914 21 - TSS region transcription start site region 73769
Tssr73770 7 100656916 to 100656942 26 - TSS region transcription start site region 73770
Tssr73771 7 100656959 to 100656985 26 - TSS region transcription start site region 73771
Tssr73772 7 100658345 to 100658356 11 - TSS region transcription start site region 73772
Tssr73773 7 100658369 to 100658386 17 - TSS region transcription start site region 73773
Tssr73774 7 100658394 to 100658451 57 - TSS region transcription start site region 73774
Tssr2343 7 100658406 to 100658411 5 + TSS region transcription start site region 2343
Tssr73775 7 100662331 to 100662362 31 - TSS region transcription start site region 73775
Tssr73776 7 100662376 to 100662395 19 - TSS region transcription start site region 73776
Tssr73777 7 100662431 to 100662440 9 - TSS region transcription start site region 73777
Tssr73778 7 100664303 to 100664313 10 - TSS region transcription start site region 73778
Gm35082 7 100675088 to 100677760 2672 + lincRNA gene predicted gene, 35082
Tssr2344 7 100681302 to 100681310 8 + TSS region transcription start site region 2344
Tssr73779 7 100706274 to 100706284 10 - TSS region transcription start site region 73779
Cpgi19488 7 100706365 to 100707144 779 CpG island CpG island 19488
Tssr68167 7 100706606 to 100706619 13 + TSS region transcription start site region 68167
Tssr68168 7 100706623 to 100706668 45 + TSS region transcription start site region 68168
Fam168a 7 100706640 to 100841646 135006 + protein coding gene family with sequence similarity 168, member A
Tssr68169 7 100706669 to 100706695 26 + TSS region transcription start site region 68169
Tssr68170 7 100706705 to 100706731 26 + TSS region transcription start site region 68170
Tssr2345 7 100706737 to 100706762 25 + TSS region transcription start site region 2345
Tssr68171 7 100706773 to 100706785 12 + TSS region transcription start site region 68171
Tssr68172 7 100706798 to 100706809 11 + TSS region transcription start site region 68172
Tssr2346 7 100706812 to 100706842 30 + TSS region transcription start site region 2346
Tssr2347 7 100706848 to 100706854 6 + TSS region transcription start site region 2347