Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:99463248-100415931

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxp1 6 98925338 to 99522721 597383 - protein coding gene forkhead box P1
Gm20696 6 99257484 to 99666797 409313 - protein coding gene predicted gene 20696
Tssr62311 6 99484187 to 99484197 10 - TSS region transcription start site region 62311
Gm22328 6 99484591 to 99484702 111 - miRNA gene predicted gene, 22328
Tssr62312 6 99500204 to 99500207 3 - TSS region transcription start site region 62312
Tssr62313 6 99504790 to 99504798 8 - TSS region transcription start site region 62313
Tssr62314 6 99516866 to 99516870 4 - TSS region transcription start site region 62314
Tssr62315 6 99518637 to 99518640 3 - TSS region transcription start site region 62315
Cpgi17781 6 99520215 to 99523601 3386 CpG island CpG island 17781
Tssr62316 6 99520949 to 99521030 81 - TSS region transcription start site region 62316
Tssr62317 6 99521050 to 99521072 22 - TSS region transcription start site region 62317
Tssr62318 6 99521153 to 99521167 14 - TSS region transcription start site region 62318
Tssr62319 6 99521212 to 99521225 13 - TSS region transcription start site region 62319
Tssr62320 6 99521229 to 99521260 31 - TSS region transcription start site region 62320
Tssr57977 6 99521348 to 99521363 15 + TSS region transcription start site region 57977
Tssr57978 6 99521371 to 99521399 28 + TSS region transcription start site region 57978
Tssr57979 6 99521406 to 99521419 13 + TSS region transcription start site region 57979
Tssr62321 6 99521728 to 99521744 16 - TSS region transcription start site region 62321
Tssr57980 6 99522449 to 99522454 5 + TSS region transcription start site region 57980
Tssr62322 6 99522570 to 99522592 22 - TSS region transcription start site region 62322
Tssr62323 6 99522655 to 99522736 81 - TSS region transcription start site region 62323
Tssr62324 6 99523323 to 99523338 15 - TSS region transcription start site region 62324
Tssr62325 6 99523373 to 99523405 32 - TSS region transcription start site region 62325
Gm46991 6 99527748 to 99533668 5920 - lncRNA gene predicted gene, 46991
Tssr62326 6 99545813 to 99545814 1 - TSS region transcription start site region 62326
Gm24936 6 99575891 to 99576137 246 + unclassified non-coding RNA gene predicted gene, 24936
Tssr62327 6 99585256 to 99585260 4 - TSS region transcription start site region 62327
Tssr62328 6 99595000 to 99595011 11 - TSS region transcription start site region 62328
Tssr1951 6 99618889 to 99618915 26 - TSS region transcription start site region 1951
Eif4e3 6 99625137 to 99666771 41634 - protein coding gene eukaryotic translation initiation factor 4E member 3
Tssr62329 6 99628942 to 99628945 3 - TSS region transcription start site region 62329
Tssr57981 6 99655665 to 99655676 11 + TSS region transcription start site region 57981
Gm44104 6 99658442 to 99662218 3776 - unclassified gene predicted gene, 44104
Tssr57982 6 99665868 to 99665877 9 + TSS region transcription start site region 57982
Cpgi17782 6 99666074 to 99667255 1181 CpG island CpG island 17782
Tssr62330 6 99666762 to 99666786 24 - TSS region transcription start site region 62330
Tssr62331 6 99666790 to 99666823 33 - TSS region transcription start site region 62331
Tssr62332 6 99667430 to 99667448 18 - TSS region transcription start site region 62332
Tssr62333 6 99669580 to 99669595 15 - TSS region transcription start site region 62333
Cpgi17783 6 99691663 to 99693878 2215 CpG island CpG island 17783
Tssr57983 6 99692280 to 99692323 43 + TSS region transcription start site region 57983
Tssr57984 6 99692362 to 99692377 15 + TSS region transcription start site region 57984
Gpr27 6 99692679 to 99693818 1139 + protein coding gene G protein-coupled receptor 27
Prok2 6 99711299 to 99726392 15093 - protein coding gene prokineticin 2
Tssr62334 6 99712167 to 99712174 7 - TSS region transcription start site region 62334
Cpgi17784 6 99725946 to 99727177 1231 CpG island CpG island 17784
Tssr62335 6 99726289 to 99726297 8 - TSS region transcription start site region 62335
Tssr62336 6 99726315 to 99726324 9 - TSS region transcription start site region 62336
Tssr62337 6 99726334 to 99726360 26 - TSS region transcription start site region 62337
Tssr62338 6 99726401 to 99726414 13 - TSS region transcription start site region 62338
Tssr62339 6 99726419 to 99726426 7 - TSS region transcription start site region 62339
Gm26748 6 99726785 to 99732609 5824 + antisense lncRNA gene predicted gene, 26748
Tssr1952 6 99750310 to 99750311 1 + TSS region transcription start site region 1952
Tssr57985 6 99770525 to 99770528 3 + TSS region transcription start site region 57985
Gm5314 6 99770657 to 99771122 465 + pseudogene predicted gene 5314
Tssr57986 6 99774939 to 99774952 13 + TSS region transcription start site region 57986
Tssr1953 6 99775019 to 99775020 1 + TSS region transcription start site region 1953
Gm6681 6 99839708 to 99840314 606 - pseudogene predicted gene 6681
Gm33143 6 99865071 to 99866771 1700 + lncRNA gene predicted gene, 33143
Tssr57987 6 99877607 to 99877621 14 + TSS region transcription start site region 57987
Tpt1-ps3 6 99877816 to 99878334 518 - pseudogene tumor protein, translationally-controlled, pseudogene 3
Tssr57988 6 99877960 to 99877979 19 + TSS region transcription start site region 57988
Tssr62340 6 99878431 to 99878433 2 - TSS region transcription start site region 62340
Gm43067 6 99884400 to 99896845 12445 - lincRNA gene predicted gene 43067
Gm24248 6 99893226 to 99893547 321 - unclassified non-coding RNA gene predicted gene, 24248
Tssr62341 6 99896829 to 99896858 29 - TSS region transcription start site region 62341
Gm44442 6 99928248 to 99950931 22683 - lincRNA gene predicted gene, 44442
D6Mit147 6 99964082 to 99964224 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 147
D6Mit147.2 6 99964188 to 99964297 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 147.2
Gm33201 6 99966521 to 99987545 21024 - lincRNA gene predicted gene, 33201
D6Mit38 6 100057020 to 100057179 159 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 38
ssl 6 100057020 to 114282207 14225187 heritable phenotypic marker small swaying lethal
Gm33243 6 100061897 to 100087243 25346 + lncRNA gene predicted gene, 33243
Gm38866 6 100095025 to 100099614 4589 + lncRNA gene predicted gene, 38866
Gm33297 6 100099616 to 100101412 1796 + lncRNA gene predicted gene, 33297
2010109P13Rik 6 100143423 to 100143814 391 - lncRNA gene RIKEN cDNA 2010109P13 gene
Gm33448 6 100155134 to 100181732 26598 - lncRNA gene predicted gene, 33448
Cpgi17785 6 100155655 to 100156184 529 CpG island CpG island 17785
Cpgi17786 6 100163213 to 100163367 154 CpG island CpG island 17786
Cpgi17787 6 100170855 to 100171048 193 CpG island CpG island 17787
Tssr62342 6 100181717 to 100181733 16 - TSS region transcription start site region 62342
Gm33554 6 100196003 to 100201228 5225 + lncRNA gene predicted gene, 33554
Gm38867 6 100205328 to 100209141 3813 + lncRNA gene predicted gene, 38867
Rybp 6 100228565 to 100287358 58793 - protein coding gene RING1 and YY1 binding protein
Tssr62343 6 100244143 to 100244147 4 - TSS region transcription start site region 62343
Gm18422 6 100247229 to 100248261 1032 + pseudogene predicted gene, 18422
Gm44045 6 100256708 to 100259227 2519 - unclassified gene predicted gene, 44045
Gm44044 6 100272610 to 100273698 1088 - unclassified gene predicted gene, 44044
Tssr62344 6 100286323 to 100286327 4 - TSS region transcription start site region 62344
Cpgi17788 6 100286390 to 100288374 1984 CpG island CpG island 17788
Tssr62345 6 100287444 to 100287465 21 - TSS region transcription start site region 62345
Tssr62346 6 100287479 to 100287501 22 - TSS region transcription start site region 62346