Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:98901315-100551324

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxp1 6 98925338 to 99522721 597383 - protein coding gene forkhead box P1
Tssr62256 6 98928026 to 98928043 17 - TSS region transcription start site region 62256
Tssr62257 6 98928923 to 98928925 2 - TSS region transcription start site region 62257
Tssr62258 6 98929393 to 98929398 5 - TSS region transcription start site region 62258
Tssr62259 6 98930069 to 98930084 15 - TSS region transcription start site region 62259
Tssr62260 6 98941742 to 98941743 1 - TSS region transcription start site region 62260
Tssr62261 6 98945576 to 98945591 15 - TSS region transcription start site region 62261
9130401L11Rik 6 98967701 to 98971926 4225 unclassified gene RIKEN cDNA 9130401L11 gene
Tssr62262 6 98978159 to 98978169 10 - TSS region transcription start site region 62262
D6Mit103 6 98993988 to 98994106 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 103
6030492E11Rik 6 98997642 to 98998605 963 unclassified gene RIKEN cDNA 6030492E11 gene
Tssr57961 6 99003216 to 99003229 13 + TSS region transcription start site region 57961
Tssr62263 6 99025212 to 99025215 3 - TSS region transcription start site region 62263
Cpgi17779 6 99027665 to 99028981 1316 CpG island CpG island 17779
Tssr62264 6 99028195 to 99028204 9 - TSS region transcription start site region 62264
Tssr62265 6 99028251 to 99028295 44 - TSS region transcription start site region 62265
Tssr62266 6 99028434 to 99028456 22 - TSS region transcription start site region 62266
Tssr62267 6 99028874 to 99028924 50 - TSS region transcription start site region 62267
Tssr62268 6 99044414 to 99044426 12 - TSS region transcription start site region 62268
Tssr62269 6 99052849 to 99052872 23 - TSS region transcription start site region 62269
Tssr57962 6 99053469 to 99053475 6 + TSS region transcription start site region 57962
Tssr62270 6 99057295 to 99057331 36 - TSS region transcription start site region 62270
Cpgi17780 6 99062721 to 99063039 318 CpG island CpG island 17780
Gm49348 6 99075911 to 99076057 146 - miRNA gene predicted gene, 49348
Tssr62271 6 99087497 to 99087544 47 - TSS region transcription start site region 62271
Tssr57963 6 99094731 to 99094737 6 + TSS region transcription start site region 57963
Tssr62272 6 99095581 to 99095593 12 - TSS region transcription start site region 62272
Tssr62273 6 99095603 to 99095613 10 - TSS region transcription start site region 62273
Tssr57964 6 99095720 to 99095731 11 + TSS region transcription start site region 57964
Tssr57965 6 99095773 to 99095782 9 + TSS region transcription start site region 57965
Tssr62274 6 99096181 to 99096186 5 - TSS region transcription start site region 62274
Tssr62275 6 99096196 to 99096240 44 - TSS region transcription start site region 62275
Tssr62276 6 99096245 to 99096259 14 - TSS region transcription start site region 62276
Tssr62277 6 99096261 to 99096272 11 - TSS region transcription start site region 62277
Tssr62278 6 99096955 to 99096961 6 - TSS region transcription start site region 62278
Gm19665 6 99097669 to 99108316 10647 - unclassified gene predicted gene, 19665
Gm38865 6 99118335 to 99127527 9192 - lncRNA gene predicted gene, 38865
Tssr62279 6 99167759 to 99167763 4 - TSS region transcription start site region 62279
Tssr57966 6 99172390 to 99172422 32 + TSS region transcription start site region 57966
Tssr62280 6 99173307 to 99173318 11 - TSS region transcription start site region 62280
Tssr62281 6 99173327 to 99173365 38 - TSS region transcription start site region 62281
Tssr1950 6 99173377 to 99173388 11 - TSS region transcription start site region 1950
Tssr62282 6 99173592 to 99173597 5 - TSS region transcription start site region 62282
Tssr62283 6 99176359 to 99176367 8 - TSS region transcription start site region 62283
Tssr57967 6 99189082 to 99189106 24 + TSS region transcription start site region 57967
Tssr62284 6 99193038 to 99193041 3 - TSS region transcription start site region 62284
Tssr62285 6 99194509 to 99194513 4 - TSS region transcription start site region 62285
Tssr62286 6 99203127 to 99203131 4 - TSS region transcription start site region 62286
Tssr57968 6 99204438 to 99204459 21 + TSS region transcription start site region 57968
Tssr62287 6 99204462 to 99204470 8 - TSS region transcription start site region 62287
Tssr62288 6 99204488 to 99204497 9 - TSS region transcription start site region 62288
Tssr62289 6 99204955 to 99204974 19 - TSS region transcription start site region 62289
Tssr62290 6 99234306 to 99234310 4 - TSS region transcription start site region 62290
Gm20696 6 99257484 to 99666797 409313 - protein coding gene predicted gene 20696
Tssr57969 6 99262886 to 99262891 5 + TSS region transcription start site region 57969
Tssr57970 6 99262924 to 99262928 4 + TSS region transcription start site region 57970
Tssr57971 6 99264456 to 99264488 32 + TSS region transcription start site region 57971
Tssr57972 6 99265022 to 99265042 20 + TSS region transcription start site region 57972
Tssr62291 6 99266366 to 99266378 12 - TSS region transcription start site region 62291
Tssr62292 6 99266381 to 99266401 20 - TSS region transcription start site region 62292
Tssr62293 6 99266494 to 99266540 46 - TSS region transcription start site region 62293
Tssr62294 6 99300299 to 99300313 14 - TSS region transcription start site region 62294
Tssr57973 6 99305986 to 99305994 8 + TSS region transcription start site region 57973
Gm32882 6 99318493 to 99323409 4916 + lncRNA gene predicted gene, 32882
Tssr62295 6 99334332 to 99334357 25 - TSS region transcription start site region 62295
Tssr57974 6 99334472 to 99334482 10 + TSS region transcription start site region 57974
Tssr62296 6 99338279 to 99338290 11 - TSS region transcription start site region 62296
Tssr62297 6 99338329 to 99338350 21 - TSS region transcription start site region 62297
Tssr62298 6 99339100 to 99339102 2 - TSS region transcription start site region 62298
Tssr62299 6 99339375 to 99339386 11 - TSS region transcription start site region 62299
Tssr62300 6 99339398 to 99339417 19 - TSS region transcription start site region 62300
Tssr62301 6 99339420 to 99339455 35 - TSS region transcription start site region 62301
Tssr62302 6 99339463 to 99339484 21 - TSS region transcription start site region 62302
Tssr57975 6 99340546 to 99340557 11 + TSS region transcription start site region 57975
Tssr62303 6 99364282 to 99364286 4 - TSS region transcription start site region 62303
Tssr62304 6 99376021 to 99376036 15 - TSS region transcription start site region 62304
Tssr62305 6 99376044 to 99376065 21 - TSS region transcription start site region 62305
Gm20705 6 99384607 to 99388499 3892 - sense intronic lncRNA gene predicted gene 20705
Tssr62306 6 99402047 to 99402050 3 - TSS region transcription start site region 62306
Tssr62307 6 99404055 to 99404060 5 - TSS region transcription start site region 62307
Tssr62308 6 99429015 to 99429043 28 - TSS region transcription start site region 62308
Tssr57976 6 99433479 to 99433491 12 + TSS region transcription start site region 57976
Tssr62309 6 99435346 to 99435368 22 - TSS region transcription start site region 62309
Tssr62310 6 99435371 to 99435382 11 - TSS region transcription start site region 62310
Tssr62311 6 99484187 to 99484197 10 - TSS region transcription start site region 62311
Gm22328 6 99484591 to 99484702 111 - miRNA gene predicted gene, 22328
Tssr62312 6 99500204 to 99500207 3 - TSS region transcription start site region 62312
Tssr62313 6 99504790 to 99504798 8 - TSS region transcription start site region 62313
Tssr62314 6 99516866 to 99516870 4 - TSS region transcription start site region 62314
Tssr62315 6 99518637 to 99518640 3 - TSS region transcription start site region 62315
Cpgi17781 6 99520215 to 99523601 3386 CpG island CpG island 17781
Tssr62316 6 99520949 to 99521030 81 - TSS region transcription start site region 62316
Tssr62317 6 99521050 to 99521072 22 - TSS region transcription start site region 62317
Tssr62318 6 99521153 to 99521167 14 - TSS region transcription start site region 62318
Tssr62319 6 99521212 to 99521225 13 - TSS region transcription start site region 62319
Tssr62320 6 99521229 to 99521260 31 - TSS region transcription start site region 62320
Tssr57977 6 99521348 to 99521363 15 + TSS region transcription start site region 57977
Tssr57978 6 99521371 to 99521399 28 + TSS region transcription start site region 57978
Tssr57979 6 99521406 to 99521419 13 + TSS region transcription start site region 57979
Tssr62321 6 99521728 to 99521744 16 - TSS region transcription start site region 62321
Tssr57980 6 99522449 to 99522454 5 + TSS region transcription start site region 57980
Tssr62322 6 99522570 to 99522592 22 - TSS region transcription start site region 62322
Tssr62323 6 99522655 to 99522736 81 - TSS region transcription start site region 62323
Tssr62324 6 99523323 to 99523338 15 - TSS region transcription start site region 62324
Tssr62325 6 99523373 to 99523405 32 - TSS region transcription start site region 62325
Gm46991 6 99527748 to 99533668 5920 - lncRNA gene predicted gene, 46991
Tssr62326 6 99545813 to 99545814 1 - TSS region transcription start site region 62326
Gm24936 6 99575891 to 99576137 246 + unclassified non-coding RNA gene predicted gene, 24936
Tssr62327 6 99585256 to 99585260 4 - TSS region transcription start site region 62327
Tssr62328 6 99595000 to 99595011 11 - TSS region transcription start site region 62328
Tssr1951 6 99618889 to 99618915 26 - TSS region transcription start site region 1951
Eif4e3 6 99625137 to 99666771 41634 - protein coding gene eukaryotic translation initiation factor 4E member 3
Tssr62329 6 99628942 to 99628945 3 - TSS region transcription start site region 62329
Tssr57981 6 99655665 to 99655676 11 + TSS region transcription start site region 57981
Gm44104 6 99658442 to 99662218 3776 - unclassified gene predicted gene, 44104
Tssr57982 6 99665868 to 99665877 9 + TSS region transcription start site region 57982
Cpgi17782 6 99666074 to 99667255 1181 CpG island CpG island 17782
Tssr62330 6 99666762 to 99666786 24 - TSS region transcription start site region 62330
Tssr62331 6 99666790 to 99666823 33 - TSS region transcription start site region 62331
Tssr62332 6 99667430 to 99667448 18 - TSS region transcription start site region 62332
Tssr62333 6 99669580 to 99669595 15 - TSS region transcription start site region 62333
Cpgi17783 6 99691663 to 99693878 2215 CpG island CpG island 17783
Tssr57983 6 99692280 to 99692323 43 + TSS region transcription start site region 57983
Tssr57984 6 99692362 to 99692377 15 + TSS region transcription start site region 57984
Gpr27 6 99692679 to 99693818 1139 + protein coding gene G protein-coupled receptor 27
Prok2 6 99711299 to 99726392 15093 - protein coding gene prokineticin 2
Tssr62334 6 99712167 to 99712174 7 - TSS region transcription start site region 62334
Cpgi17784 6 99725946 to 99727177 1231 CpG island CpG island 17784
Tssr62335 6 99726289 to 99726297 8 - TSS region transcription start site region 62335
Tssr62336 6 99726315 to 99726324 9 - TSS region transcription start site region 62336
Tssr62337 6 99726334 to 99726360 26 - TSS region transcription start site region 62337
Tssr62338 6 99726401 to 99726414 13 - TSS region transcription start site region 62338
Tssr62339 6 99726419 to 99726426 7 - TSS region transcription start site region 62339
Gm26748 6 99726785 to 99732609 5824 + antisense lncRNA gene predicted gene, 26748
Tssr1952 6 99750310 to 99750311 1 + TSS region transcription start site region 1952
Tssr57985 6 99770525 to 99770528 3 + TSS region transcription start site region 57985
Gm5314 6 99770657 to 99771122 465 + pseudogene predicted gene 5314
Tssr57986 6 99774939 to 99774952 13 + TSS region transcription start site region 57986
Tssr1953 6 99775019 to 99775020 1 + TSS region transcription start site region 1953
Gm6681 6 99839708 to 99840314 606 - pseudogene predicted gene 6681
Gm33143 6 99865071 to 99866771 1700 + lncRNA gene predicted gene, 33143
Tssr57987 6 99877607 to 99877621 14 + TSS region transcription start site region 57987
Tpt1-ps3 6 99877816 to 99878334 518 - pseudogene tumor protein, translationally-controlled, pseudogene 3
Tssr57988 6 99877960 to 99877979 19 + TSS region transcription start site region 57988
Tssr62340 6 99878431 to 99878433 2 - TSS region transcription start site region 62340
Gm43067 6 99884400 to 99896845 12445 - lincRNA gene predicted gene 43067
Gm24248 6 99893226 to 99893547 321 - unclassified non-coding RNA gene predicted gene, 24248
Tssr62341 6 99896829 to 99896858 29 - TSS region transcription start site region 62341
Gm44442 6 99928248 to 99950931 22683 - lincRNA gene predicted gene, 44442
D6Mit147 6 99964082 to 99964224 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 147
D6Mit147.2 6 99964188 to 99964297 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 147.2
Gm33201 6 99966521 to 99987545 21024 - lincRNA gene predicted gene, 33201
D6Mit38 6 100057020 to 100057179 159 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 38
ssl 6 100057020 to 114282207 14225187 heritable phenotypic marker small swaying lethal
Gm33243 6 100061897 to 100087243 25346 + lncRNA gene predicted gene, 33243
Gm38866 6 100095025 to 100099614 4589 + lncRNA gene predicted gene, 38866
Gm33297 6 100099616 to 100101412 1796 + lncRNA gene predicted gene, 33297
2010109P13Rik 6 100143423 to 100143814 391 - lncRNA gene RIKEN cDNA 2010109P13 gene
Gm33448 6 100155134 to 100181732 26598 - lncRNA gene predicted gene, 33448
Cpgi17785 6 100155655 to 100156184 529 CpG island CpG island 17785
Cpgi17786 6 100163213 to 100163367 154 CpG island CpG island 17786
Cpgi17787 6 100170855 to 100171048 193 CpG island CpG island 17787
Tssr62342 6 100181717 to 100181733 16 - TSS region transcription start site region 62342
Gm33554 6 100196003 to 100201228 5225 + lncRNA gene predicted gene, 33554
Gm38867 6 100205328 to 100209141 3813 + lncRNA gene predicted gene, 38867
Rybp 6 100228565 to 100287358 58793 - protein coding gene RING1 and YY1 binding protein
Tssr62343 6 100244143 to 100244147 4 - TSS region transcription start site region 62343
Gm18422 6 100247229 to 100248261 1032 + pseudogene predicted gene, 18422
Gm44045 6 100256708 to 100259227 2519 - unclassified gene predicted gene, 44045
Gm44044 6 100272610 to 100273698 1088 - unclassified gene predicted gene, 44044
Tssr62344 6 100286323 to 100286327 4 - TSS region transcription start site region 62344
Cpgi17788 6 100286390 to 100288374 1984 CpG island CpG island 17788
Tssr62345 6 100287444 to 100287465 21 - TSS region transcription start site region 62345
Tssr62346 6 100287479 to 100287501 22 - TSS region transcription start site region 62346
Tssr57989 6 100451026 to 100451042 16 + TSS region transcription start site region 57989
Tssr57990 6 100451046 to 100451057 11 + TSS region transcription start site region 57990
Gm38868 6 100469239 to 100471237 1998 + lncRNA gene predicted gene, 38868
Gm23234 6 100494681 to 100494814 133 - snoRNA gene predicted gene, 23234
Gm44107 6 100498515 to 100499914 1399 + lincRNA gene predicted gene, 44107
Gm33741 6 100504191 to 100510029 5838 - lncRNA gene predicted gene, 33741
Tssr57991 6 100527350 to 100527395 45 + TSS region transcription start site region 57991
1700049E22Rik 6 100527400 to 100533426 6026 + lincRNA gene RIKEN cDNA 1700049E22 gene