Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:96559196-97799206

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W10q11 6 4503823 to 96656149 92152326 QTL weight 10 weeks QTL 11
W3q3 6 4503823 to 96656149 92152326 QTL weight 3 weeks QTL 3
Egq8 6 4503823 to 96656149 92152326 QTL early growth QTL 8
W6q4 6 4503823 to 96656149 92152326 QTL weight 6 weeks QTL 4
Alh1 6 78000000 to 97000000 19000000 QTL amplitude of lateral head displacement 1
Tafa1 6 96113154 to 96657198 544044 + protein coding gene TAFA chemokine like family member 1
Gm26011 6 96560761 to 96560864 103 - snRNA gene predicted gene, 26011
Tssr57838 6 96592987 to 96592988 1 + TSS region transcription start site region 57838
D6Mit132 6 96655951 to 96656149 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 132
D6Mit379 6 96823096 to 96823191 95 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-379
Tafa4 6 96831206 to 97060411 229205 - protein coding gene TAFA chemokine like family member 4
Tssr1942 6 96978270 to 96978274 4 + TSS region transcription start site region 1942
Cpgi17769 6 97060134 to 97060667 533 CpG island CpG island 17769
Tssr62194 6 97060407 to 97060420 13 - TSS region transcription start site region 62194
Eogt 6 97110024 to 97149182 39158 - protein coding gene EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
Gm44065 6 97148194 to 97151720 3526 + unclassified gene predicted gene, 44065
Cpgi17770 6 97148211 to 97149192 981 CpG island CpG island 17770
Tssr1943 6 97148441 to 97148442 1 + TSS region transcription start site region 1943
Tssr62195 6 97148834 to 97148845 11 - TSS region transcription start site region 62195
Tssr62196 6 97148857 to 97148904 47 - TSS region transcription start site region 62196
Tssr62197 6 97148908 to 97148930 22 - TSS region transcription start site region 62197
Tmf1 6 97152997 to 97179122 26125 - protein coding gene TATA element modulatory factor 1
Tssr62198 6 97155037 to 97155041 4 - TSS region transcription start site region 62198
Gm26175 6 97162817 to 97162947 130 - snoRNA gene predicted gene, 26175
Tssr62199 6 97163545 to 97163557 12 - TSS region transcription start site region 62199
Cpgi17771 6 97178663 to 97179659 996 CpG island CpG island 17771
Tssr62200 6 97179071 to 97179095 24 - TSS region transcription start site region 62200
Tssr62201 6 97179100 to 97179159 59 - TSS region transcription start site region 62201
Tssr57839 6 97179196 to 97179206 10 + TSS region transcription start site region 57839
Uba3 6 97183670 to 97205647 21977 - protein coding gene ubiquitin-like modifier activating enzyme 3
Cpgi17772 6 97205152 to 97205922 770 CpG island CpG island 17772
Tssr62202 6 97205520 to 97205531 11 - TSS region transcription start site region 62202
Tssr62203 6 97205549 to 97205572 23 - TSS region transcription start site region 62203
Tssr62204 6 97205588 to 97205593 5 - TSS region transcription start site region 62204
Tssr57840 6 97210382 to 97210412 30 + TSS region transcription start site region 57840
Tssr57841 6 97210481 to 97210485 4 + TSS region transcription start site region 57841
Cpgi17773 6 97210664 to 97211136 472 CpG island CpG island 17773
Tssr57842 6 97210717 to 97210728 11 + TSS region transcription start site region 57842
Tssr57843 6 97210737 to 97210749 12 + TSS region transcription start site region 57843
Tssr57844 6 97210780 to 97210818 38 + TSS region transcription start site region 57844
Arl6ip5 6 97210792 to 97233315 22523 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 5
Tssr62205 6 97212289 to 97212300 11 - TSS region transcription start site region 62205
Tssr57845 6 97213943 to 97213956 13 + TSS region transcription start site region 57845
Tssr57846 6 97217972 to 97217996 24 + TSS region transcription start site region 57846
Tssr62206 6 97221740 to 97221772 32 - TSS region transcription start site region 62206
Tssr57847 6 97222604 to 97222619 15 + TSS region transcription start site region 57847
Tssr57848 6 97225037 to 97225052 15 + TSS region transcription start site region 57848
Tssr57849 6 97232561 to 97232576 15 + TSS region transcription start site region 57849
Tssr57850 6 97232658 to 97232683 25 + TSS region transcription start site region 57850
Tssr57851 6 97232858 to 97232872 14 + TSS region transcription start site region 57851
Tssr57852 6 97233245 to 97233265 20 + TSS region transcription start site region 57852
Lmod3 6 97238534 to 97252759 14225 - protein coding gene leiomodin 3 (fetal)
Tssr62207 6 97248520 to 97248544 24 - TSS region transcription start site region 62207
Tssr62208 6 97252325 to 97252337 12 - TSS region transcription start site region 62208
Tssr62209 6 97252457 to 97252486 29 - TSS region transcription start site region 62209
Tssr62210 6 97252648 to 97252662 14 - TSS region transcription start site region 62210
Tssr62211 6 97252678 to 97252698 20 - TSS region transcription start site region 62211
Tssr62212 6 97252723 to 97252737 14 - TSS region transcription start site region 62212
Tssr62213 6 97252747 to 97252765 18 - TSS region transcription start site region 62213
Tssr62214 6 97252768 to 97252777 9 - TSS region transcription start site region 62214
Tssr62215 6 97252779 to 97252790 11 - TSS region transcription start site region 62215
Tssr57853 6 97252879 to 97252898 19 + TSS region transcription start site region 57853
Gm32191 6 97253047 to 97270452 17405 + lncRNA gene predicted gene, 32191
Tssr62216 6 97253124 to 97253152 28 - TSS region transcription start site region 62216
Tssr62217 6 97253155 to 97253172 17 - TSS region transcription start site region 62217
Tssr62218 6 97253175 to 97253214 39 - TSS region transcription start site region 62218
Tssr57854 6 97262553 to 97262569 16 + TSS region transcription start site region 57854
D6Mit215 6 97280272 to 97280406 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 215
Frmd4b 6 97286867 to 97617541 330674 - protein coding gene FERM domain containing 4B
D6Mit326 6 97291848 to 97291937 89 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 326
Tssr62219 6 97309306 to 97309320 14 - TSS region transcription start site region 62219
Tssr62220 6 97311054 to 97311068 14 - TSS region transcription start site region 62220
Tssr62221 6 97312023 to 97312038 15 - TSS region transcription start site region 62221
Tssr1944 6 97312042 to 97312043 1 - TSS region transcription start site region 1944
Tssr62222 6 97312044 to 97312055 11 - TSS region transcription start site region 62222
Tssr57855 6 97312098 to 97312146 48 + TSS region transcription start site region 57855
Tssr62223 6 97312106 to 97312109 3 - TSS region transcription start site region 62223
Tssr62224 6 97312275 to 97312289 14 - TSS region transcription start site region 62224
Tssr62225 6 97312522 to 97312559 37 - TSS region transcription start site region 62225
Tssr62226 6 97352315 to 97352323 8 - TSS region transcription start site region 62226
Tssr62227 6 97354112 to 97354149 37 - TSS region transcription start site region 62227
Tssr62228 6 97354164 to 97354195 31 - TSS region transcription start site region 62228
Tssr62229 6 97381106 to 97381117 11 - TSS region transcription start site region 62229
Tssr62230 6 97384504 to 97384510 6 - TSS region transcription start site region 62230
Tssr57856 6 97385198 to 97385203 5 + TSS region transcription start site region 57856
Gm32380 6 97396905 to 97400688 3783 + lncRNA gene predicted gene, 32380
Tssr62231 6 97431402 to 97431453 51 - TSS region transcription start site region 62231
Tssr62232 6 97431459 to 97431466 7 - TSS region transcription start site region 62232
Tssr57857 6 97431494 to 97431512 18 + TSS region transcription start site region 57857
Tssr57858 6 97439542 to 97439557 15 + TSS region transcription start site region 57858
Gm19653 6 97449750 to 97451486 1736 + pseudogene predicted gene, 19653
Tssr62233 6 97457249 to 97457281 32 - TSS region transcription start site region 62233
Tssr62234 6 97459262 to 97459278 16 - TSS region transcription start site region 62234
Tssr62235 6 97459279 to 97459303 24 - TSS region transcription start site region 62235
Tssr62236 6 97459309 to 97459320 11 - TSS region transcription start site region 62236
Tssr62237 6 97459357 to 97459375 18 - TSS region transcription start site region 62237
Cpgi17774 6 97487477 to 97488110 633 CpG island CpG island 17774
Tssr62238 6 97487773 to 97487797 24 - TSS region transcription start site region 62238
Tssr62239 6 97487801 to 97487879 78 - TSS region transcription start site region 62239
Tssr62240 6 97487888 to 97487972 84 - TSS region transcription start site region 62240
Tssr57859 6 97509653 to 97509698 45 + TSS region transcription start site region 57859
Gm46970 6 97514567 to 97538173 23606 + lncRNA gene predicted gene, 46970
Tssr62241 6 97519092 to 97519096 4 - TSS region transcription start site region 62241
Cpgi17775 6 97523130 to 97523422 292 CpG island CpG island 17775
Tssr57860 6 97536591 to 97536593 2 + TSS region transcription start site region 57860
Gm25852 6 97547438 to 97547567 129 - snoRNA gene predicted gene, 25852
Gm46969 6 97566098 to 97577455 11357 + lncRNA gene predicted gene, 46969
Gm23510 6 97572076 to 97572238 162 - snRNA gene predicted gene, 23510
Gm32247 6 97577959 to 97656402 78443 + lncRNA gene predicted gene, 32247
Tssr62242 6 97578093 to 97578125 32 - TSS region transcription start site region 62242
Gm44102 6 97579427 to 97581092 1665 - unclassified gene predicted gene, 44102
Tssr62243 6 97606472 to 97606475 3 - TSS region transcription start site region 62243
Cpgi17776 6 97616719 to 97617849 1130 CpG island CpG island 17776
Tssr62244 6 97617536 to 97617597 61 - TSS region transcription start site region 62244
Tssr62245 6 97617627 to 97617642 15 - TSS region transcription start site region 62245
C030006F08Rik 6 97619678 to 97620415 737 unclassified gene RIKEN cDNA C030006F08 gene
Tssr57861 6 97625002 to 97625007 5 + TSS region transcription start site region 57861
Gm32481 6 97693923 to 97710400 16477 + lncRNA gene predicted gene, 32481
Gm24565 6 97730439 to 97730545 106 + snRNA gene predicted gene, 24565
D6Mit67 6 97751800 to 97751952 152 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 67
Gm23703 6 97790512 to 97790654 142 + snoRNA gene predicted gene, 23703
W6q5 6 146633626 to 96655951 -49977675 QTL weight 6 weeks QTL 5
Egq11 6 146633626 to 96655951 -49977675 QTL early growth QTL 11
Tesq2 6 146633626 to 96655951 -49977675 QTL testis weight QTL 2