Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:96453663-97904659

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W10q11 6 4503823 to 96656149 92152326 QTL weight 10 weeks QTL 11
W6q4 6 4503823 to 96656149 92152326 QTL weight 6 weeks QTL 4
Egq8 6 4503823 to 96656149 92152326 QTL early growth QTL 8
W3q3 6 4503823 to 96656149 92152326 QTL weight 3 weeks QTL 3
Alh1 6 78000000 to 97000000 19000000 QTL amplitude of lateral head displacement 1
Tafa1 6 96113154 to 96657198 544044 + protein coding gene TAFA chemokine like family member 1
Gm22971 6 96469435 to 96469531 96 - snRNA gene predicted gene, 22971
Gm26011 6 96560761 to 96560864 103 - snRNA gene predicted gene, 26011
Tssr57838 6 96592987 to 96592988 1 + TSS region transcription start site region 57838
D6Mit132 6 96655951 to 96656149 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 132
D6Mit379 6 96823096 to 96823191 95 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-379
Tafa4 6 96831206 to 97060411 229205 - protein coding gene TAFA chemokine like family member 4
Tssr1942 6 96978270 to 96978274 4 + TSS region transcription start site region 1942
Cpgi17769 6 97060134 to 97060667 533 CpG island CpG island 17769
Tssr62194 6 97060407 to 97060420 13 - TSS region transcription start site region 62194
Eogt 6 97110024 to 97149182 39158 - protein coding gene EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
Gm44065 6 97148194 to 97151720 3526 + unclassified gene predicted gene, 44065
Cpgi17770 6 97148211 to 97149192 981 CpG island CpG island 17770
Tssr1943 6 97148441 to 97148442 1 + TSS region transcription start site region 1943
Tssr62195 6 97148834 to 97148845 11 - TSS region transcription start site region 62195
Tssr62196 6 97148857 to 97148904 47 - TSS region transcription start site region 62196
Tssr62197 6 97148908 to 97148930 22 - TSS region transcription start site region 62197
Tmf1 6 97152997 to 97179122 26125 - protein coding gene TATA element modulatory factor 1
Tssr62198 6 97155037 to 97155041 4 - TSS region transcription start site region 62198
Gm26175 6 97162817 to 97162947 130 - snoRNA gene predicted gene, 26175
Tssr62199 6 97163545 to 97163557 12 - TSS region transcription start site region 62199
Cpgi17771 6 97178663 to 97179659 996 CpG island CpG island 17771
Tssr62200 6 97179071 to 97179095 24 - TSS region transcription start site region 62200
Tssr62201 6 97179100 to 97179159 59 - TSS region transcription start site region 62201
Tssr57839 6 97179196 to 97179206 10 + TSS region transcription start site region 57839
Uba3 6 97183670 to 97205647 21977 - protein coding gene ubiquitin-like modifier activating enzyme 3
Cpgi17772 6 97205152 to 97205922 770 CpG island CpG island 17772
Tssr62202 6 97205520 to 97205531 11 - TSS region transcription start site region 62202
Tssr62203 6 97205549 to 97205572 23 - TSS region transcription start site region 62203
Tssr62204 6 97205588 to 97205593 5 - TSS region transcription start site region 62204
Tssr57840 6 97210382 to 97210412 30 + TSS region transcription start site region 57840
Tssr57841 6 97210481 to 97210485 4 + TSS region transcription start site region 57841
Cpgi17773 6 97210664 to 97211136 472 CpG island CpG island 17773
Tssr57842 6 97210717 to 97210728 11 + TSS region transcription start site region 57842
Tssr57843 6 97210737 to 97210749 12 + TSS region transcription start site region 57843
Tssr57844 6 97210780 to 97210818 38 + TSS region transcription start site region 57844
Arl6ip5 6 97210792 to 97233315 22523 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 5
Tssr62205 6 97212289 to 97212300 11 - TSS region transcription start site region 62205
Tssr57845 6 97213943 to 97213956 13 + TSS region transcription start site region 57845
Tssr57846 6 97217972 to 97217996 24 + TSS region transcription start site region 57846
Tssr62206 6 97221740 to 97221772 32 - TSS region transcription start site region 62206
Tssr57847 6 97222604 to 97222619 15 + TSS region transcription start site region 57847
Tssr57848 6 97225037 to 97225052 15 + TSS region transcription start site region 57848
Tssr57849 6 97232561 to 97232576 15 + TSS region transcription start site region 57849
Tssr57850 6 97232658 to 97232683 25 + TSS region transcription start site region 57850
Tssr57851 6 97232858 to 97232872 14 + TSS region transcription start site region 57851
Tssr57852 6 97233245 to 97233265 20 + TSS region transcription start site region 57852
Lmod3 6 97238534 to 97252759 14225 - protein coding gene leiomodin 3 (fetal)
Tssr62207 6 97248520 to 97248544 24 - TSS region transcription start site region 62207
Tssr62208 6 97252325 to 97252337 12 - TSS region transcription start site region 62208
Tssr62209 6 97252457 to 97252486 29 - TSS region transcription start site region 62209
Tssr62210 6 97252648 to 97252662 14 - TSS region transcription start site region 62210
Tssr62211 6 97252678 to 97252698 20 - TSS region transcription start site region 62211
Tssr62212 6 97252723 to 97252737 14 - TSS region transcription start site region 62212
Tssr62213 6 97252747 to 97252765 18 - TSS region transcription start site region 62213
Tssr62214 6 97252768 to 97252777 9 - TSS region transcription start site region 62214
Tssr62215 6 97252779 to 97252790 11 - TSS region transcription start site region 62215
Tssr57853 6 97252879 to 97252898 19 + TSS region transcription start site region 57853
Gm32191 6 97253047 to 97270452 17405 + lncRNA gene predicted gene, 32191
Tssr62216 6 97253124 to 97253152 28 - TSS region transcription start site region 62216
Tssr62217 6 97253155 to 97253172 17 - TSS region transcription start site region 62217
Tssr62218 6 97253175 to 97253214 39 - TSS region transcription start site region 62218
Tssr57854 6 97262553 to 97262569 16 + TSS region transcription start site region 57854
D6Mit215 6 97280272 to 97280406 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 215
Frmd4b 6 97286867 to 97617541 330674 - protein coding gene FERM domain containing 4B
D6Mit326 6 97291848 to 97291937 89 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 326
Tssr62219 6 97309306 to 97309320 14 - TSS region transcription start site region 62219
Tssr62220 6 97311054 to 97311068 14 - TSS region transcription start site region 62220
Tssr62221 6 97312023 to 97312038 15 - TSS region transcription start site region 62221
Tssr1944 6 97312042 to 97312043 1 - TSS region transcription start site region 1944
Tssr62222 6 97312044 to 97312055 11 - TSS region transcription start site region 62222
Tssr57855 6 97312098 to 97312146 48 + TSS region transcription start site region 57855
Tssr62223 6 97312106 to 97312109 3 - TSS region transcription start site region 62223
Tssr62224 6 97312275 to 97312289 14 - TSS region transcription start site region 62224
Tssr62225 6 97312522 to 97312559 37 - TSS region transcription start site region 62225
Tssr62226 6 97352315 to 97352323 8 - TSS region transcription start site region 62226
Tssr62227 6 97354112 to 97354149 37 - TSS region transcription start site region 62227
Tssr62228 6 97354164 to 97354195 31 - TSS region transcription start site region 62228
Tssr62229 6 97381106 to 97381117 11 - TSS region transcription start site region 62229
Tssr62230 6 97384504 to 97384510 6 - TSS region transcription start site region 62230
Tssr57856 6 97385198 to 97385203 5 + TSS region transcription start site region 57856
Gm32380 6 97396905 to 97400688 3783 + lncRNA gene predicted gene, 32380
Tssr62231 6 97431402 to 97431453 51 - TSS region transcription start site region 62231
Tssr62232 6 97431459 to 97431466 7 - TSS region transcription start site region 62232
Tssr57857 6 97431494 to 97431512 18 + TSS region transcription start site region 57857
Tssr57858 6 97439542 to 97439557 15 + TSS region transcription start site region 57858
Gm19653 6 97449750 to 97451486 1736 + pseudogene predicted gene, 19653
Tssr62233 6 97457249 to 97457281 32 - TSS region transcription start site region 62233
Tssr62234 6 97459262 to 97459278 16 - TSS region transcription start site region 62234
Tssr62235 6 97459279 to 97459303 24 - TSS region transcription start site region 62235
Tssr62236 6 97459309 to 97459320 11 - TSS region transcription start site region 62236
Tssr62237 6 97459357 to 97459375 18 - TSS region transcription start site region 62237
Cpgi17774 6 97487477 to 97488110 633 CpG island CpG island 17774
Tssr62238 6 97487773 to 97487797 24 - TSS region transcription start site region 62238
Tssr62239 6 97487801 to 97487879 78 - TSS region transcription start site region 62239
Tssr62240 6 97487888 to 97487972 84 - TSS region transcription start site region 62240
Tssr57859 6 97509653 to 97509698 45 + TSS region transcription start site region 57859
Gm46970 6 97514567 to 97538173 23606 + lncRNA gene predicted gene, 46970
Tssr62241 6 97519092 to 97519096 4 - TSS region transcription start site region 62241
Cpgi17775 6 97523130 to 97523422 292 CpG island CpG island 17775
Tssr57860 6 97536591 to 97536593 2 + TSS region transcription start site region 57860
Gm25852 6 97547438 to 97547567 129 - snoRNA gene predicted gene, 25852
Gm46969 6 97566098 to 97577455 11357 + lncRNA gene predicted gene, 46969
Gm23510 6 97572076 to 97572238 162 - snRNA gene predicted gene, 23510
Gm32247 6 97577959 to 97656402 78443 + lncRNA gene predicted gene, 32247
Tssr62242 6 97578093 to 97578125 32 - TSS region transcription start site region 62242
Gm44102 6 97579427 to 97581092 1665 - unclassified gene predicted gene, 44102
Tssr62243 6 97606472 to 97606475 3 - TSS region transcription start site region 62243
Cpgi17776 6 97616719 to 97617849 1130 CpG island CpG island 17776
Tssr62244 6 97617536 to 97617597 61 - TSS region transcription start site region 62244
Tssr62245 6 97617627 to 97617642 15 - TSS region transcription start site region 62245
C030006F08Rik 6 97619678 to 97620415 737 unclassified gene RIKEN cDNA C030006F08 gene
Tssr57861 6 97625002 to 97625007 5 + TSS region transcription start site region 57861
Gm32481 6 97693923 to 97710400 16477 + lncRNA gene predicted gene, 32481
Gm24565 6 97730439 to 97730545 106 + snRNA gene predicted gene, 24565
D6Mit67 6 97751800 to 97751952 152 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 67
Gm23703 6 97790512 to 97790654 142 + snoRNA gene predicted gene, 23703
Cpgi17777 6 97806830 to 97807598 768 CpG island CpG island 17777
Tssr57862 6 97807014 to 97807067 53 + TSS region transcription start site region 57862
Mitf 6 97807052 to 98021349 214297 + protein coding gene melanogenesis associated transcription factor
Tssr57863 6 97807073 to 97807084 11 + TSS region transcription start site region 57863
Tssr57864 6 97807646 to 97807668 22 + TSS region transcription start site region 57864
Tssr57865 6 97807898 to 97807914 16 + TSS region transcription start site region 57865
Tssr62246 6 97818219 to 97818239 20 - TSS region transcription start site region 62246
Tssr62247 6 97821893 to 97821898 5 - TSS region transcription start site region 62247
Tssr57866 6 97826936 to 97826969 33 + TSS region transcription start site region 57866
Tssr57867 6 97827234 to 97827242 8 + TSS region transcription start site region 57867
Tssr57868 6 97827253 to 97827264 11 + TSS region transcription start site region 57868
Tssr57869 6 97827279 to 97827302 23 + TSS region transcription start site region 57869
Tssr1945 6 97827313 to 97827316 3 + TSS region transcription start site region 1945
Tssr57870 6 97827445 to 97827461 16 + TSS region transcription start site region 57870
Tssr57871 6 97827465 to 97827479 14 + TSS region transcription start site region 57871
Tssr57872 6 97828239 to 97828249 10 + TSS region transcription start site region 57872
Tssr57873 6 97828290 to 97828295 5 + TSS region transcription start site region 57873
Tssr57874 6 97828300 to 97828312 12 + TSS region transcription start site region 57874
Tssr57875 6 97828317 to 97828332 15 + TSS region transcription start site region 57875
Tssr57876 6 97828352 to 97828362 10 + TSS region transcription start site region 57876
Tssr57877 6 97829260 to 97829303 43 + TSS region transcription start site region 57877
Tssr57878 6 97829304 to 97829316 12 + TSS region transcription start site region 57878
Tssr57879 6 97829320 to 97829346 26 + TSS region transcription start site region 57879
Tssr57880 6 97829373 to 97829393 20 + TSS region transcription start site region 57880
Tssr57881 6 97829573 to 97829576 3 + TSS region transcription start site region 57881
Tssr57882 6 97829671 to 97829682 11 + TSS region transcription start site region 57882
Tssr57883 6 97830947 to 97830958 11 + TSS region transcription start site region 57883
Tssr57884 6 97831331 to 97831343 12 + TSS region transcription start site region 57884
Tssr57885 6 97833004 to 97833019 15 + TSS region transcription start site region 57885
Tssr57886 6 97835169 to 97835183 14 + TSS region transcription start site region 57886
Tssr57887 6 97836501 to 97836541 40 + TSS region transcription start site region 57887
Tssr57888 6 97850132 to 97850144 12 + TSS region transcription start site region 57888
Tssr57889 6 97850672 to 97850700 28 + TSS region transcription start site region 57889
Tssr57890 6 97850917 to 97850943 26 + TSS region transcription start site region 57890
Tssr57891 6 97850977 to 97850986 9 + TSS region transcription start site region 57891
Tssr57892 6 97853502 to 97853518 16 + TSS region transcription start site region 57892
Tssr1946 6 97854735 to 97854753 18 + TSS region transcription start site region 1946
Tssr57893 6 97862889 to 97862934 45 + TSS region transcription start site region 57893
Tssr62248 6 97863398 to 97863402 4 - TSS region transcription start site region 62248
Tssr57894 6 97868791 to 97868806 15 + TSS region transcription start site region 57894
Tssr57895 6 97869376 to 97869387 11 + TSS region transcription start site region 57895
Tssr57896 6 97874174 to 97874182 8 + TSS region transcription start site region 57896
Tssr57897 6 97875948 to 97875959 11 + TSS region transcription start site region 57897
Tssr57898 6 97876151 to 97876170 19 + TSS region transcription start site region 57898
Tssr57899 6 97876540 to 97876569 29 + TSS region transcription start site region 57899
Tssr57900 6 97880515 to 97880519 4 + TSS region transcription start site region 57900
Tssr57901 6 97884046 to 97884050 4 + TSS region transcription start site region 57901
Tssr57902 6 97888258 to 97888269 11 + TSS region transcription start site region 57902
Gm15531 6 97890288 to 97890539 251 - pseudogene predicted gene 15531
Tssr62249 6 97890570 to 97890575 5 - TSS region transcription start site region 62249
Tssr57903 6 97892355 to 97892371 16 + TSS region transcription start site region 57903
Tssr57904 6 97893936 to 97893952 16 + TSS region transcription start site region 57904
Tssr57905 6 97894036 to 97894064 28 + TSS region transcription start site region 57905
Tssr57906 6 97904652 to 97904668 16 + TSS region transcription start site region 57906
Tesq2 6 146633626 to 96655951 -49977675 QTL testis weight QTL 2
Egq11 6 146633626 to 96655951 -49977675 QTL early growth QTL 11
W6q5 6 146633626 to 96655951 -49977675 QTL weight 6 weeks QTL 5