Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:94223770-97213794

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Egq8 6 4503823 to 96656149 92152326 QTL early growth QTL 8
W10q11 6 4503823 to 96656149 92152326 QTL weight 10 weeks QTL 11
W3q3 6 4503823 to 96656149 92152326 QTL weight 3 weeks QTL 3
W6q4 6 4503823 to 96656149 92152326 QTL weight 6 weeks QTL 4
Efw 6 75544356 to 94225955 18681599 QTL epididymal fat weight
Nidd3n 6 75544356 to 94225955 18681599 QTL non-insulin-dependent diabetes mellitus 3 in NSY
Alh1 6 78000000 to 97000000 19000000 QTL amplitude of lateral head displacement 1
Magi1 6 93675455 to 94283917 608462 - protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 1
4930511A08Rik 6 94132923 to 94237442 104519 - lncRNA gene RIKEN cDNA 4930511A08 gene
D6Mit178 6 94225829 to 94225955 126 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 178
Tssr62169 6 94229105 to 94229118 13 - TSS region transcription start site region 62169
Tssr62170 6 94241324 to 94241336 12 - TSS region transcription start site region 62170
D6Mit249 6 94249215 to 94249355 140 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 249
Tssr62171 6 94251474 to 94251478 4 - TSS region transcription start site region 62171
D6Mit146 6 94272941 to 94273050 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 146
Cpgi17759 6 94282458 to 94284825 2367 CpG island CpG island 17759
Tssr62172 6 94283515 to 94283541 26 - TSS region transcription start site region 62172
Tssr62173 6 94283575 to 94283602 27 - TSS region transcription start site region 62173
Tssr62174 6 94283741 to 94283791 50 - TSS region transcription start site region 62174
Tssr62175 6 94283800 to 94283820 20 - TSS region transcription start site region 62175
Tssr62176 6 94283835 to 94283846 11 - TSS region transcription start site region 62176
Tssr62177 6 94283848 to 94283936 88 - TSS region transcription start site region 62177
Gm31661 6 94284034 to 94292086 8052 + lncRNA gene predicted gene, 31661
Gm44307 6 94323271 to 94324034 763 - pseudogene predicted gene, 44307
Gm19908 6 94349534 to 94349924 390 + pseudogene predicted gene, 19908
Gm7825 6 94417829 to 94418244 415 + pseudogene predicted gene 7825
Gm44315 6 94484180 to 94484398 218 - pseudogene predicted gene, 44315
Gm19079 6 94495431 to 94495966 535 - pseudogene predicted gene, 19079
Cpgi17760 6 94500124 to 94500626 502 CpG island CpG island 17760
Tssr57808 6 94500313 to 94500353 40 + TSS region transcription start site region 57808
Slc25a26 6 94500331 to 94604672 104341 + protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
Tssr57809 6 94500357 to 94500371 14 + TSS region transcription start site region 57809
Tssr57810 6 94500387 to 94500398 11 + TSS region transcription start site region 57810
Tssr57811 6 94592346 to 94592359 13 + TSS region transcription start site region 57811
Lrig1 6 94604529 to 94700158 95629 - protein coding gene leucine-rich repeats and immunoglobulin-like domains 1
Mir7041 6 94606364 to 94606415 51 - miRNA gene microRNA 7041
Tssr62178 6 94654617 to 94654622 5 - TSS region transcription start site region 62178
Tssr57812 6 94661669 to 94661706 37 + TSS region transcription start site region 57812
Tssr62179 6 94665193 to 94665220 27 - TSS region transcription start site region 62179
Tssr62180 6 94665325 to 94665347 22 - TSS region transcription start site region 62180
Tssr57813 6 94665536 to 94665551 15 + TSS region transcription start site region 57813
Tssr57814 6 94672712 to 94672725 13 + TSS region transcription start site region 57814
Tssr57815 6 94680942 to 94680952 10 + TSS region transcription start site region 57815
Tssr62181 6 94681684 to 94681694 10 - TSS region transcription start site region 62181
Tssr57816 6 94681755 to 94681791 36 + TSS region transcription start site region 57816
Tssr62182 6 94683876 to 94683880 4 - TSS region transcription start site region 62182
Tssr62183 6 94698856 to 94698859 3 - TSS region transcription start site region 62183
Tssr57817 6 94698909 to 94698915 6 + TSS region transcription start site region 57817
Cpgi17761 6 94699072 to 94700493 1421 CpG island CpG island 17761
Tssr57818 6 94699214 to 94699224 10 + TSS region transcription start site region 57818
Tssr62184 6 94700154 to 94700176 22 - TSS region transcription start site region 62184
Gm6638 6 94722169 to 94722803 634 + pseudogene predicted gene 6638
Tssr57819 6 94722172 to 94722177 5 + TSS region transcription start site region 57819
Cpgi17762 6 94730048 to 94730255 207 CpG island CpG island 17762
D6Nds2 6 94739206 to 94739316 110 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 2
Tssr57820 6 94745551 to 94745558 7 + TSS region transcription start site region 57820
Cpgi17763 6 94760716 to 94761134 418 CpG island CpG island 17763
Gm43997 6 94799432 to 94800436 1004 + unclassified gene predicted gene, 43997
Gm7833 6 94820530 to 94821519 989 + pseudogene predicted gene 7833
Gm23364 6 94823733 to 94823805 72 + miRNA gene predicted gene, 23364
Gm24601 6 94826781 to 94826923 142 - rRNA gene predicted gene, 24601
Tssr62185 6 94826881 to 94826889 8 - TSS region transcription start site region 62185
Gm44100 6 94848398 to 94848833 435 - pseudogene predicted gene, 44100
D6Mit101 6 94859651 to 94859795 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 101
4930511E03Rik 6 94943834 to 94951545 7711 + lincRNA gene RIKEN cDNA 4930511E03 gene
2410024F20Rik 6 95092012 to 95095080 3068 unclassified gene RIKEN cDNA 2410024F20 gene
Cpgi17764 6 95098441 to 95098706 265 CpG island CpG island 17764
Gm26501 6 95100201 to 95100307 106 - snRNA gene predicted gene, 26501
Kbtbd8os 6 95114017 to 95117631 3614 - antisense lncRNA gene kelch repeat and BTB (POZ) domain containing 8, opposite strand
Cpgi17765 6 95117589 to 95118586 997 CpG island CpG island 17765
Kbtbd8 6 95117880 to 95129793 11913 + protein coding gene kelch repeat and BTB (POZ) domain containing 8
Tssr57821 6 95117901 to 95117960 59 + TSS region transcription start site region 57821
Tssr1941 6 95149866 to 95149872 6 + TSS region transcription start site region 1941
Gm17822 6 95240228 to 95240578 350 - pseudogene predicted gene, 17822
D6Mit156 6 95245438 to 95245535 97 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 156
Tssr57822 6 95250264 to 95250274 10 + TSS region transcription start site region 57822
Gm5723 6 95250301 to 95254515 4214 + pseudogene predicted gene 5723
AY512915 6 95290574 to 95333993 43419 - lncRNA gene cDNA sequence AY512915
Gm10234 6 95322112 to 95322210 98 + protein coding gene predicted gene 10234
Tssr62186 6 95333992 to 95333994 2 - TSS region transcription start site region 62186
Suclg2 6 95473009 to 95718800 245791 - protein coding gene succinate-Coenzyme A ligase, GDP-forming, beta subunit
Cpgi17766 6 95718067 to 95719199 1132 CpG island CpG island 17766
Tssr62187 6 95718770 to 95718794 24 - TSS region transcription start site region 62187
Tssr62188 6 95718800 to 95718832 32 - TSS region transcription start site region 62188
Gm32009 6 95841599 to 95892114 50515 + lncRNA gene predicted gene, 32009
Gm38864 6 95905228 to 95922972 17744 + lncRNA gene predicted gene, 38864
Gm7838 6 95925750 to 95926893 1143 - pseudogene predicted gene 7838
2900060L22Rik 6 96022634 to 96117045 94411 - unclassified non-coding RNA gene RIKEN cDNA 2900060L22 gene
Tssr57823 6 96032995 to 96033022 27 + TSS region transcription start site region 57823
Gm5881 6 96033003 to 96033369 366 - pseudogene predicted gene 5881
Tssr62189 6 96033275 to 96033297 22 - TSS region transcription start site region 62189
A330102K18Rik 6 96035431 to 96036590 1159 unclassified gene RIKEN cDNA A330102K18 gene
Tssr57824 6 96113106 to 96113117 11 + TSS region transcription start site region 57824
Tssr57825 6 96113118 to 96113127 9 + TSS region transcription start site region 57825
Tssr57826 6 96113146 to 96113170 24 + TSS region transcription start site region 57826
Tafa1 6 96113154 to 96657198 544044 + protein coding gene TAFA chemokine like family member 1
Tssr57827 6 96113448 to 96113452 4 + TSS region transcription start site region 57827
Tssr57828 6 96115249 to 96115271 22 + TSS region transcription start site region 57828
Tssr62190 6 96115914 to 96115918 4 - TSS region transcription start site region 62190
Cpgi17767 6 96116637 to 96117227 590 CpG island CpG island 17767
Tssr62191 6 96116971 to 96117004 33 - TSS region transcription start site region 62191
Tssr57829 6 96126649 to 96126663 14 + TSS region transcription start site region 57829
Tssr57830 6 96140780 to 96140802 22 + TSS region transcription start site region 57830
1700123L14Rik 6 96164503 to 96166205 1702 - protein coding gene RIKEN cDNA 1700123L14 gene
Cpgi17768 6 96165416 to 96165570 154 CpG island CpG island 17768
Tssr62192 6 96166195 to 96166208 13 - TSS region transcription start site region 62192
Tssr62193 6 96166211 to 96166258 47 - TSS region transcription start site region 62193
Tssr57831 6 96253810 to 96253813 3 + TSS region transcription start site region 57831
Tssr57832 6 96258619 to 96258634 15 + TSS region transcription start site region 57832
Tssr57833 6 96282417 to 96282420 3 + TSS region transcription start site region 57833
D6Mit68 6 96330435 to 96330583 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 68
Tssr57834 6 96357084 to 96357106 22 + TSS region transcription start site region 57834
Tssr57835 6 96375349 to 96375358 9 + TSS region transcription start site region 57835
Tssr57836 6 96377810 to 96377814 4 + TSS region transcription start site region 57836
Tssr57837 6 96399643 to 96399664 21 + TSS region transcription start site region 57837
D6Mit191 6 96413461 to 96413651 190 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 191
Gm22971 6 96469435 to 96469531 96 - snRNA gene predicted gene, 22971
Gm26011 6 96560761 to 96560864 103 - snRNA gene predicted gene, 26011
Tssr57838 6 96592987 to 96592988 1 + TSS region transcription start site region 57838
D6Mit132 6 96655951 to 96656149 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 132
D6Mit379 6 96823096 to 96823191 95 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-379
Tafa4 6 96831206 to 97060411 229205 - protein coding gene TAFA chemokine like family member 4
Tssr1942 6 96978270 to 96978274 4 + TSS region transcription start site region 1942
Cpgi17769 6 97060134 to 97060667 533 CpG island CpG island 17769
Tssr62194 6 97060407 to 97060420 13 - TSS region transcription start site region 62194
Eogt 6 97110024 to 97149182 39158 - protein coding gene EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
Gm44065 6 97148194 to 97151720 3526 + unclassified gene predicted gene, 44065
Cpgi17770 6 97148211 to 97149192 981 CpG island CpG island 17770
Tssr1943 6 97148441 to 97148442 1 + TSS region transcription start site region 1943
Tssr62195 6 97148834 to 97148845 11 - TSS region transcription start site region 62195
Tssr62196 6 97148857 to 97148904 47 - TSS region transcription start site region 62196
Tssr62197 6 97148908 to 97148930 22 - TSS region transcription start site region 62197
Tmf1 6 97152997 to 97179122 26125 - protein coding gene TATA element modulatory factor 1
Tssr62198 6 97155037 to 97155041 4 - TSS region transcription start site region 62198
Gm26175 6 97162817 to 97162947 130 - snoRNA gene predicted gene, 26175
Tssr62199 6 97163545 to 97163557 12 - TSS region transcription start site region 62199
Cpgi17771 6 97178663 to 97179659 996 CpG island CpG island 17771
Tssr62200 6 97179071 to 97179095 24 - TSS region transcription start site region 62200
Tssr62201 6 97179100 to 97179159 59 - TSS region transcription start site region 62201
Tssr57839 6 97179196 to 97179206 10 + TSS region transcription start site region 57839
Uba3 6 97183670 to 97205647 21977 - protein coding gene ubiquitin-like modifier activating enzyme 3
Cpgi17772 6 97205152 to 97205922 770 CpG island CpG island 17772
Tssr62202 6 97205520 to 97205531 11 - TSS region transcription start site region 62202
Tssr62203 6 97205549 to 97205572 23 - TSS region transcription start site region 62203
Tssr62204 6 97205588 to 97205593 5 - TSS region transcription start site region 62204
Tssr57840 6 97210382 to 97210412 30 + TSS region transcription start site region 57840
Tssr57841 6 97210481 to 97210485 4 + TSS region transcription start site region 57841
Cpgi17773 6 97210664 to 97211136 472 CpG island CpG island 17773
Tssr57842 6 97210717 to 97210728 11 + TSS region transcription start site region 57842
Tssr57843 6 97210737 to 97210749 12 + TSS region transcription start site region 57843
Tssr57844 6 97210780 to 97210818 38 + TSS region transcription start site region 57844
Arl6ip5 6 97210792 to 97233315 22523 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 5
Tssr62205 6 97212289 to 97212300 11 - TSS region transcription start site region 62205
Tesq2 6 146633626 to 96655951 -49977675 QTL testis weight QTL 2
W6q5 6 146633626 to 96655951 -49977675 QTL weight 6 weeks QTL 5
Egq11 6 146633626 to 96655951 -49977675 QTL early growth QTL 11