Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:92242306-98623933

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503 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W10q11 6 4503823 to 96656149 92152326 QTL weight 10 weeks QTL 11
W3q3 6 4503823 to 96656149 92152326 QTL weight 3 weeks QTL 3
Egq8 6 4503823 to 96656149 92152326 QTL early growth QTL 8
W6q4 6 4503823 to 96656149 92152326 QTL weight 6 weeks QTL 4
Cplaq9 6 38669625 to 92607450 53937825 QTL circadian period of locomotor activity 9
Bbaa20 6 71322621 to 93464093 22141472 QTL B.burgdorferi-associated arthritis 20
Arrd1 6 75544356 to 92607450 17063094 QTL age-related retinal degeneration 1
Nidd3n 6 75544356 to 94225955 18681599 QTL non-insulin-dependent diabetes mellitus 3 in NSY
Efw 6 75544356 to 94225955 18681599 QTL epididymal fat weight
Alh1 6 78000000 to 97000000 19000000 QTL amplitude of lateral head displacement 1
Idd20 6 92039950 to 92716697 676747 QTL insulin dependent diabetes susceptibility 20
Trh 6 92242061 to 92244650 2589 - protein coding gene thyrotropin releasing hormone
Tssr62108 6 92242461 to 92242472 11 - TSS region transcription start site region 62108
Tssr62109 6 92242672 to 92242708 36 - TSS region transcription start site region 62109
Tssr62110 6 92242741 to 92242757 16 - TSS region transcription start site region 62110
Tssr62111 6 92242891 to 92242905 14 - TSS region transcription start site region 62111
Cpgi17749 6 92244292 to 92245001 709 CpG island CpG island 17749
Tssr62112 6 92244645 to 92244649 4 - TSS region transcription start site region 62112
Tssr62113 6 92246380 to 92246416 36 - TSS region transcription start site region 62113
Gm30688 6 92269224 to 92315813 46589 + lncRNA gene predicted gene, 30688
Gm44803 6 92271417 to 92271572 155 - pseudogene predicted gene 44803
Gm44024 6 92280918 to 92281393 475 - pseudogene predicted gene, 44024
Tssr57790 6 92306105 to 92306113 8 + TSS region transcription start site region 57790
Prickle2 6 92370908 to 92706155 335247 - protein coding gene prickle planar cell polarity protein 2
Cpgi17750 6 92376072 to 92376642 570 CpG island CpG island 17750
Gm38862 6 92403581 to 92422323 18742 + lncRNA gene predicted gene, 38862
Tssr62114 6 92418055 to 92418058 3 - TSS region transcription start site region 62114
Gm38861 6 92422455 to 92424686 2231 + lncRNA gene predicted gene, 38861
Tssr62115 6 92427261 to 92427264 3 - TSS region transcription start site region 62115
Tssr57791 6 92449187 to 92449197 10 + TSS region transcription start site region 57791
Tssr62116 6 92450047 to 92450061 14 - TSS region transcription start site region 62116
Tssr62117 6 92480975 to 92480992 17 - TSS region transcription start site region 62117
Tssr62118 6 92481164 to 92481214 50 - TSS region transcription start site region 62118
Tssr62119 6 92481343 to 92481405 62 - TSS region transcription start site region 62119
Tssr62120 6 92481642 to 92481646 4 - TSS region transcription start site region 62120
Tssr62121 6 92534835 to 92534850 15 - TSS region transcription start site region 62121
Tssr62122 6 92534855 to 92534890 35 - TSS region transcription start site region 62122
Tssr62123 6 92534902 to 92534913 11 - TSS region transcription start site region 62123
Gm17797 6 92561777 to 92562773 996 + pseudogene predicted gene, 17797
Gm5880 6 92564433 to 92565981 1548 - pseudogene predicted gene 5880
Tssr62124 6 92565602 to 92565640 38 - TSS region transcription start site region 62124
Tssr62125 6 92578499 to 92578503 4 - TSS region transcription start site region 62125
Pfat5 6 92607306 to 92607450 144 QTL predicted fat percentage 5
Sluc45 6 92607306 to 98258933 5651627 QTL susceptibility to lung cancer 45
D6Mit284 6 92607306 to 92607450 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 284
Tssr62126 6 92640787 to 92640800 13 - TSS region transcription start site region 62126
Tssr62127 6 92642343 to 92642347 4 - TSS region transcription start site region 62127
Tssr62128 6 92673468 to 92673471 3 - TSS region transcription start site region 62128
Tssr62129 6 92677853 to 92677856 3 - TSS region transcription start site region 62129
Cpgi17751 6 92705782 to 92706416 634 CpG island CpG island 17751
Tssr62130 6 92706173 to 92706234 61 - TSS region transcription start site region 62130
Tssr62131 6 92706237 to 92706296 59 - TSS region transcription start site region 62131
D6Mit31.2 6 92716403 to 92716531 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 31.2
D6Mit31 6 92716503 to 92716697 194 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 31
Cypr4 6 92716503 to 92716697 194 QTL cytokine production 4
Adamts9 6 92772699 to 92943492 170793 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
Tssr62132 6 92773333 to 92773338 5 - TSS region transcription start site region 62132
Tssr57792 6 92816433 to 92816455 22 + TSS region transcription start site region 57792
Tssr57793 6 92816460 to 92816483 23 + TSS region transcription start site region 57793
Tssr57794 6 92816489 to 92816498 9 + TSS region transcription start site region 57794
A730049H05Rik 6 92816578 to 92847176 30598 + protein coding gene RIKEN cDNA A730049H05 gene
Tssr62133 6 92816636 to 92816655 19 - TSS region transcription start site region 62133
Tssr57795 6 92827634 to 92827663 29 + TSS region transcription start site region 57795
Tssr57796 6 92827672 to 92827685 13 + TSS region transcription start site region 57796
Tssr57797 6 92827725 to 92827747 22 + TSS region transcription start site region 57797
Tssr57798 6 92827779 to 92827790 11 + TSS region transcription start site region 57798
Tssr62134 6 92857026 to 92857031 5 - TSS region transcription start site region 62134
Tssr62135 6 92860431 to 92860447 16 - TSS region transcription start site region 62135
Tssr62136 6 92860494 to 92860509 15 - TSS region transcription start site region 62136
Gm15737 6 92869357 to 92884411 15054 + protein coding gene predicted gene 15737
Tssr62137 6 92870105 to 92870107 2 - TSS region transcription start site region 62137
Tssr62138 6 92908343 to 92908347 4 - TSS region transcription start site region 62138
Tssr62139 6 92918067 to 92918085 18 - TSS region transcription start site region 62139
Cpgi17752 6 92940535 to 92941364 829 CpG island CpG island 17752
Tssr57799 6 92940572 to 92940592 20 + TSS region transcription start site region 57799
9530026P05Rik 6 92940582 to 93111749 171167 + antisense lncRNA gene RIKEN cDNA 9530026P05 gene
Tssr57800 6 92940594 to 92940619 25 + TSS region transcription start site region 57800
Cpgi17753 6 92941400 to 92941680 280 CpG island CpG island 17753
Cpgi17754 6 92942020 to 92942417 397 CpG island CpG island 17754
Cpgi17755 6 92942935 to 92943977 1042 CpG island CpG island 17755
Tssr62140 6 92943370 to 92943382 12 - TSS region transcription start site region 62140
Tssr62141 6 92943485 to 92943507 22 - TSS region transcription start site region 62141
Tssr62142 6 92943513 to 92943539 26 - TSS region transcription start site region 62142
D630004L18Rik 6 92963853 to 92964660 807 unclassified gene RIKEN cDNA D630004L18 gene
Tssr62143 6 92988202 to 92988212 10 - TSS region transcription start site region 62143
Tssr62144 6 92988266 to 92988270 4 - TSS region transcription start site region 62144
Tssr57801 6 93018520 to 93018524 4 + TSS region transcription start site region 57801
Tssr57802 6 93034959 to 93034964 5 + TSS region transcription start site region 57802
Gm44224 6 93079108 to 93080570 1462 + unclassified gene predicted gene, 44224
Gm5313 6 93137004 to 93137990 986 - pseudogene predicted gene 5313
Gm38863 6 93194131 to 93238995 44864 + lncRNA gene predicted gene, 38863
Gm43923 6 93194941 to 93197851 2910 + unclassified gene predicted gene, 43923
Tssr57803 6 93234056 to 93234069 13 + TSS region transcription start site region 57803
Gm44220 6 93241720 to 93244206 2486 + unclassified gene predicted gene, 44220
Tssr57804 6 93241982 to 93241987 5 + TSS region transcription start site region 57804
Gm21052 6 93278033 to 93279705 1672 + pseudogene predicted gene, 21052
Gm46968 6 93299147 to 93314734 15587 - lncRNA gene predicted gene, 46968
Gm25094 6 93335458 to 93335588 130 - snoRNA gene predicted gene, 25094
D6Mit285 6 93426700 to 93426834 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 285
Tssr57805 6 93452322 to 93452325 3 + TSS region transcription start site region 57805
Gm44181 6 93455075 to 93455557 482 - unclassified gene predicted gene, 44181
D6Mit102 6 93463949 to 93464093 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 102
Pfat2 6 93463949 to 93464093 144 QTL predicted fat percentage 2
D6Dcr22 6 93463949 to 93464097 148 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 22
Gm22312 6 93509573 to 93509702 129 + snoRNA gene predicted gene, 22312
D6Mit177 6 93533087 to 93533275 188 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 177
Gm7812 6 93649352 to 93650225 873 - pseudogene predicted gene 7812
Magi1 6 93675455 to 94283917 608462 - protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 1
Tssr62145 6 93675915 to 93675919 4 - TSS region transcription start site region 62145
Cpgi17756 6 93678420 to 93679024 604 CpG island CpG island 17756
Tssr62146 6 93678926 to 93678942 16 - TSS region transcription start site region 62146
Cpgi17757 6 93715937 to 93716204 267 CpG island CpG island 17757
Tssr62147 6 93717489 to 93717517 28 - TSS region transcription start site region 62147
Tssr62148 6 93717588 to 93717598 10 - TSS region transcription start site region 62148
Tssr62149 6 93717614 to 93717622 8 - TSS region transcription start site region 62149
Tssr62150 6 93769633 to 93769637 4 - TSS region transcription start site region 62150
Tssr62151 6 93792466 to 93792482 16 - TSS region transcription start site region 62151
Gm23035 6 93793772 to 93793877 105 + snRNA gene predicted gene, 23035
Tssr62152 6 93806405 to 93806409 4 - TSS region transcription start site region 62152
Tssr62153 6 93811090 to 93811093 3 - TSS region transcription start site region 62153
Tssr62154 6 93815804 to 93815812 8 - TSS region transcription start site region 62154
Gm22840 6 93890615 to 93890750 135 + snoRNA gene predicted gene, 22840
Tssr62155 6 93893331 to 93893341 10 - TSS region transcription start site region 62155
Tssr62156 6 93912503 to 93912514 11 - TSS region transcription start site region 62156
Tssr62157 6 93912520 to 93912563 43 - TSS region transcription start site region 62157
Tssr62158 6 93912586 to 93912623 37 - TSS region transcription start site region 62158
Tssr62159 6 93912954 to 93912977 23 - TSS region transcription start site region 62159
Cpgi17758 6 93913083 to 93913355 272 CpG island CpG island 17758
Tssr62160 6 93913270 to 93913281 11 - TSS region transcription start site region 62160
Tssr62161 6 93913407 to 93913425 18 - TSS region transcription start site region 62161
Tssr62162 6 93913538 to 93913562 24 - TSS region transcription start site region 62162
Tssr62163 6 93913595 to 93913610 15 - TSS region transcription start site region 62163
Tssr62164 6 93913647 to 93913658 11 - TSS region transcription start site region 62164
Tssr62165 6 93913678 to 93913719 41 - TSS region transcription start site region 62165
B430316J06Rik 6 93917764 to 93920776 3012 unclassified gene RIKEN cDNA B430316J06 gene
8030459D09Rik 6 93988801 to 93989738 937 unclassified gene RIKEN cDNA 8030459D09 gene
Tssr62166 6 94028836 to 94028839 3 - TSS region transcription start site region 62166
Tssr1940 6 94086589 to 94086591 2 + TSS region transcription start site region 1940
D6Mit365 6 94104439 to 94104563 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 365
Tssr62167 6 94124870 to 94124873 3 - TSS region transcription start site region 62167
Gm31721 6 94129511 to 94132659 3148 + lncRNA gene predicted gene, 31721
Tssr57806 6 94130644 to 94130663 19 + TSS region transcription start site region 57806
4930511A08Rik 6 94132923 to 94237442 104519 - lncRNA gene RIKEN cDNA 4930511A08 gene
Tssr62168 6 94159789 to 94159792 3 - TSS region transcription start site region 62168
Tssr57807 6 94221955 to 94221958 3 + TSS region transcription start site region 57807
D6Mit178 6 94225829 to 94225955 126 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 178
Tssr62169 6 94229105 to 94229118 13 - TSS region transcription start site region 62169
Tssr62170 6 94241324 to 94241336 12 - TSS region transcription start site region 62170
D6Mit249 6 94249215 to 94249355 140 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 249
Tssr62171 6 94251474 to 94251478 4 - TSS region transcription start site region 62171
D6Mit146 6 94272941 to 94273050 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 146
Cpgi17759 6 94282458 to 94284825 2367 CpG island CpG island 17759
Tssr62172 6 94283515 to 94283541 26 - TSS region transcription start site region 62172
Tssr62173 6 94283575 to 94283602 27 - TSS region transcription start site region 62173
Tssr62174 6 94283741 to 94283791 50 - TSS region transcription start site region 62174
Tssr62175 6 94283800 to 94283820 20 - TSS region transcription start site region 62175
Tssr62176 6 94283835 to 94283846 11 - TSS region transcription start site region 62176
Tssr62177 6 94283848 to 94283936 88 - TSS region transcription start site region 62177
Gm31661 6 94284034 to 94292086 8052 + lncRNA gene predicted gene, 31661
Gm44307 6 94323271 to 94324034 763 - pseudogene predicted gene, 44307
Gm19908 6 94349534 to 94349924 390 + pseudogene predicted gene, 19908
Gm7825 6 94417829 to 94418244 415 + pseudogene predicted gene 7825
Gm44315 6 94484180 to 94484398 218 - pseudogene predicted gene, 44315
Gm19079 6 94495431 to 94495966 535 - pseudogene predicted gene, 19079
Cpgi17760 6 94500124 to 94500626 502 CpG island CpG island 17760
Tssr57808 6 94500313 to 94500353 40 + TSS region transcription start site region 57808
Slc25a26 6 94500331 to 94604672 104341 + protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
Tssr57809 6 94500357 to 94500371 14 + TSS region transcription start site region 57809
Tssr57810 6 94500387 to 94500398 11 + TSS region transcription start site region 57810
Tssr57811 6 94592346 to 94592359 13 + TSS region transcription start site region 57811
Lrig1 6 94604529 to 94700158 95629 - protein coding gene leucine-rich repeats and immunoglobulin-like domains 1
Mir7041 6 94606364 to 94606415 51 - miRNA gene microRNA 7041
Tssr62178 6 94654617 to 94654622 5 - TSS region transcription start site region 62178
Tssr57812 6 94661669 to 94661706 37 + TSS region transcription start site region 57812
Tssr62179 6 94665193 to 94665220 27 - TSS region transcription start site region 62179
Tssr62180 6 94665325 to 94665347 22 - TSS region transcription start site region 62180
Tssr57813 6 94665536 to 94665551 15 + TSS region transcription start site region 57813
Tssr57814 6 94672712 to 94672725 13 + TSS region transcription start site region 57814
Tssr57815 6 94680942 to 94680952 10 + TSS region transcription start site region 57815
Tssr62181 6 94681684 to 94681694 10 - TSS region transcription start site region 62181
Tssr57816 6 94681755 to 94681791 36 + TSS region transcription start site region 57816
Tssr62182 6 94683876 to 94683880 4 - TSS region transcription start site region 62182
Tssr62183 6 94698856 to 94698859 3 - TSS region transcription start site region 62183
Tssr57817 6 94698909 to 94698915 6 + TSS region transcription start site region 57817
Cpgi17761 6 94699072 to 94700493 1421 CpG island CpG island 17761
Tssr57818 6 94699214 to 94699224 10 + TSS region transcription start site region 57818
Tssr62184 6 94700154 to 94700176 22 - TSS region transcription start site region 62184
Gm6638 6 94722169 to 94722803 634 + pseudogene predicted gene 6638
Tssr57819 6 94722172 to 94722177 5 + TSS region transcription start site region 57819
Cpgi17762 6 94730048 to 94730255 207 CpG island CpG island 17762
D6Nds2 6 94739206 to 94739316 110 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 2
Tssr57820 6 94745551 to 94745558 7 + TSS region transcription start site region 57820
Cpgi17763 6 94760716 to 94761134 418 CpG island CpG island 17763
Gm43997 6 94799432 to 94800436 1004 + unclassified gene predicted gene, 43997
Gm7833 6 94820530 to 94821519 989 + pseudogene predicted gene 7833
Gm23364 6 94823733 to 94823805 72 + miRNA gene predicted gene, 23364
Gm24601 6 94826781 to 94826923 142 - rRNA gene predicted gene, 24601
Tssr62185 6 94826881 to 94826889 8 - TSS region transcription start site region 62185
Gm44100 6 94848398 to 94848833 435 - pseudogene predicted gene, 44100
D6Mit101 6 94859651 to 94859795 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 101