Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:91860602-93270640

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq9 6 38669625 to 92607450 53937825 QTL circadian period of locomotor activity 9
Arrd1 6 75544356 to 92607450 17063094 QTL age-related retinal degeneration 1
wa1l 6 78629504 to 92040033 13410529 heritable phenotypic marker waved 1-like
Gm44712 6 91876910 to 91877985 1075 - unclassified gene predicted gene 44712
Cpgi17744 6 91877809 to 91878569 760 CpG island CpG island 17744
Tssr57771 6 91878034 to 91878089 55 + TSS region transcription start site region 57771
Ccdc174 6 91878053 to 91899843 21790 + protein coding gene coiled-coil domain containing 174
4930590J08Rik 6 91902809 to 91950725 47916 + protein coding gene RIKEN cDNA 4930590J08 gene
Tssr57772 6 91904212 to 91904273 61 + TSS region transcription start site region 57772
Tssr57773 6 91904276 to 91904281 5 + TSS region transcription start site region 57773
Gm44711 6 91938250 to 91939513 1263 - unclassified gene predicted gene 44711
Tssr57774 6 91939001 to 91939003 2 + TSS region transcription start site region 57774
Cpgi17745 6 91978405 to 91979650 1245 CpG island CpG island 17745
Tssr57775 6 91978851 to 91978913 62 + TSS region transcription start site region 57775
Fgd5 6 91978878 to 92076004 97126 + protein coding gene FYVE, RhoGEF and PH domain containing 5
Tssr57776 6 91978957 to 91978983 26 + TSS region transcription start site region 57776
Tssr57777 6 91983367 to 91983370 3 + TSS region transcription start site region 57777
Gm44095 6 92007550 to 92009480 1930 + unclassified gene predicted gene, 44095
Opfdc1 6 92012313 to 92012313 0 QTL open field distance from center 1
4930466I24Rik 6 92012394 to 92016117 3723 - antisense lncRNA gene RIKEN cDNA 4930466I24 gene
Tssr62103 6 92026448 to 92026450 2 - TSS region transcription start site region 62103
Idd20 6 92039950 to 92716697 676747 QTL insulin dependent diabetes susceptibility 20
D6Mit100 6 92039950 to 92040033 83 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 100
Cpgi17746 6 92090832 to 92092602 1770 CpG island CpG island 17746
Tssr57778 6 92091378 to 92091389 11 + TSS region transcription start site region 57778
Tssr57779 6 92091405 to 92091423 18 + TSS region transcription start site region 57779
Nr2c2 6 92091418 to 92173058 81640 + protein coding gene nuclear receptor subfamily 2, group C, member 2
Tssr57780 6 92091436 to 92091466 30 + TSS region transcription start site region 57780
Tssr57781 6 92091495 to 92091506 11 + TSS region transcription start site region 57781
Tssr57782 6 92091512 to 92091523 11 + TSS region transcription start site region 57782
Tssr57783 6 92091528 to 92091537 9 + TSS region transcription start site region 57783
Tssr57784 6 92091546 to 92091557 11 + TSS region transcription start site region 57784
Tssr57785 6 92092328 to 92092334 6 + TSS region transcription start site region 57785
Tssr57786 6 92092369 to 92092419 50 + TSS region transcription start site region 57786
Tssr57787 6 92103658 to 92103662 4 + TSS region transcription start site region 57787
Tssr57788 6 92136849 to 92136853 4 + TSS region transcription start site region 57788
Gm44249 6 92144489 to 92146293 1804 - unclassified gene predicted gene, 44249
Gm46967 6 92151011 to 92157410 6399 - lncRNA gene predicted gene, 46967
Tssr57789 6 92156978 to 92156982 4 + TSS region transcription start site region 57789
9430019H13Rik 6 92165991 to 92167015 1024 unclassified gene RIKEN cDNA 9430019H13 gene
Mrps25 6 92169525 to 92184033 14508 - protein coding gene mitochondrial ribosomal protein S25
Tssr62104 6 92177452 to 92177456 4 - TSS region transcription start site region 62104
Cpgi17747 6 92183532 to 92184275 743 CpG island CpG island 17747
Tssr62105 6 92183972 to 92184038 66 - TSS region transcription start site region 62105
Rbsn 6 92186712 to 92214904 28192 - protein coding gene rabenosyn, RAB effector
Cpgi17748 6 92214050 to 92215115 1065 CpG island CpG island 17748
Tssr62106 6 92214843 to 92214877 34 - TSS region transcription start site region 62106
Tssr62107 6 92214897 to 92214906 9 - TSS region transcription start site region 62107
D6Mit362.1 6 92236417 to 92236579 162 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 362.1
D6Mit362 6 92236561 to 92236675 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 362
Trh 6 92242061 to 92244650 2589 - protein coding gene thyrotropin releasing hormone
Tssr62108 6 92242461 to 92242472 11 - TSS region transcription start site region 62108
Tssr62109 6 92242672 to 92242708 36 - TSS region transcription start site region 62109
Tssr62110 6 92242741 to 92242757 16 - TSS region transcription start site region 62110
Tssr62111 6 92242891 to 92242905 14 - TSS region transcription start site region 62111
Cpgi17749 6 92244292 to 92245001 709 CpG island CpG island 17749
Tssr62112 6 92244645 to 92244649 4 - TSS region transcription start site region 62112
Tssr62113 6 92246380 to 92246416 36 - TSS region transcription start site region 62113
Gm30688 6 92269224 to 92315813 46589 + lncRNA gene predicted gene, 30688
Gm44803 6 92271417 to 92271572 155 - pseudogene predicted gene 44803
Gm44024 6 92280918 to 92281393 475 - pseudogene predicted gene, 44024
Tssr57790 6 92306105 to 92306113 8 + TSS region transcription start site region 57790
Prickle2 6 92370908 to 92706155 335247 - protein coding gene prickle planar cell polarity protein 2
Cpgi17750 6 92376072 to 92376642 570 CpG island CpG island 17750
Gm38862 6 92403581 to 92422323 18742 + lncRNA gene predicted gene, 38862
Tssr62114 6 92418055 to 92418058 3 - TSS region transcription start site region 62114
Gm38861 6 92422455 to 92424686 2231 + lncRNA gene predicted gene, 38861
Tssr62115 6 92427261 to 92427264 3 - TSS region transcription start site region 62115
Tssr57791 6 92449187 to 92449197 10 + TSS region transcription start site region 57791
Tssr62116 6 92450047 to 92450061 14 - TSS region transcription start site region 62116
Tssr62117 6 92480975 to 92480992 17 - TSS region transcription start site region 62117
Tssr62118 6 92481164 to 92481214 50 - TSS region transcription start site region 62118
Tssr62119 6 92481343 to 92481405 62 - TSS region transcription start site region 62119
Tssr62120 6 92481642 to 92481646 4 - TSS region transcription start site region 62120
Tssr62121 6 92534835 to 92534850 15 - TSS region transcription start site region 62121
Tssr62122 6 92534855 to 92534890 35 - TSS region transcription start site region 62122
Tssr62123 6 92534902 to 92534913 11 - TSS region transcription start site region 62123
Gm17797 6 92561777 to 92562773 996 + pseudogene predicted gene, 17797
Gm5880 6 92564433 to 92565981 1548 - pseudogene predicted gene 5880
Tssr62124 6 92565602 to 92565640 38 - TSS region transcription start site region 62124
Tssr62125 6 92578499 to 92578503 4 - TSS region transcription start site region 62125
Sluc45 6 92607306 to 98258933 5651627 QTL susceptibility to lung cancer 45
D6Mit284 6 92607306 to 92607450 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 284
Pfat5 6 92607306 to 92607450 144 QTL predicted fat percentage 5
Tssr62126 6 92640787 to 92640800 13 - TSS region transcription start site region 62126
Tssr62127 6 92642343 to 92642347 4 - TSS region transcription start site region 62127
Tssr62128 6 92673468 to 92673471 3 - TSS region transcription start site region 62128
Tssr62129 6 92677853 to 92677856 3 - TSS region transcription start site region 62129
Cpgi17751 6 92705782 to 92706416 634 CpG island CpG island 17751
Tssr62130 6 92706173 to 92706234 61 - TSS region transcription start site region 62130
Tssr62131 6 92706237 to 92706296 59 - TSS region transcription start site region 62131
D6Mit31.2 6 92716403 to 92716531 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 31.2
D6Mit31 6 92716503 to 92716697 194 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 31
Cypr4 6 92716503 to 92716697 194 QTL cytokine production 4
Adamts9 6 92772699 to 92943492 170793 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
Tssr62132 6 92773333 to 92773338 5 - TSS region transcription start site region 62132
Tssr57792 6 92816433 to 92816455 22 + TSS region transcription start site region 57792
Tssr57793 6 92816460 to 92816483 23 + TSS region transcription start site region 57793
Tssr57794 6 92816489 to 92816498 9 + TSS region transcription start site region 57794
A730049H05Rik 6 92816578 to 92847176 30598 + protein coding gene RIKEN cDNA A730049H05 gene
Tssr62133 6 92816636 to 92816655 19 - TSS region transcription start site region 62133
Tssr57795 6 92827634 to 92827663 29 + TSS region transcription start site region 57795
Tssr57796 6 92827672 to 92827685 13 + TSS region transcription start site region 57796
Tssr57797 6 92827725 to 92827747 22 + TSS region transcription start site region 57797
Tssr57798 6 92827779 to 92827790 11 + TSS region transcription start site region 57798
Tssr62134 6 92857026 to 92857031 5 - TSS region transcription start site region 62134
Tssr62135 6 92860431 to 92860447 16 - TSS region transcription start site region 62135
Tssr62136 6 92860494 to 92860509 15 - TSS region transcription start site region 62136
Gm15737 6 92869357 to 92884411 15054 + protein coding gene predicted gene 15737
Tssr62137 6 92870105 to 92870107 2 - TSS region transcription start site region 62137
Tssr62138 6 92908343 to 92908347 4 - TSS region transcription start site region 62138
Tssr62139 6 92918067 to 92918085 18 - TSS region transcription start site region 62139
Cpgi17752 6 92940535 to 92941364 829 CpG island CpG island 17752
Tssr57799 6 92940572 to 92940592 20 + TSS region transcription start site region 57799
9530026P05Rik 6 92940582 to 93111749 171167 + antisense lncRNA gene RIKEN cDNA 9530026P05 gene
Tssr57800 6 92940594 to 92940619 25 + TSS region transcription start site region 57800
Cpgi17753 6 92941400 to 92941680 280 CpG island CpG island 17753
Cpgi17754 6 92942020 to 92942417 397 CpG island CpG island 17754
Cpgi17755 6 92942935 to 92943977 1042 CpG island CpG island 17755
Tssr62140 6 92943370 to 92943382 12 - TSS region transcription start site region 62140
Tssr62141 6 92943485 to 92943507 22 - TSS region transcription start site region 62141
Tssr62142 6 92943513 to 92943539 26 - TSS region transcription start site region 62142
D630004L18Rik 6 92963853 to 92964660 807 unclassified gene RIKEN cDNA D630004L18 gene
Tssr62143 6 92988202 to 92988212 10 - TSS region transcription start site region 62143
Tssr62144 6 92988266 to 92988270 4 - TSS region transcription start site region 62144
Tssr57801 6 93018520 to 93018524 4 + TSS region transcription start site region 57801
Tssr57802 6 93034959 to 93034964 5 + TSS region transcription start site region 57802
Gm44224 6 93079108 to 93080570 1462 + unclassified gene predicted gene, 44224
Gm5313 6 93137004 to 93137990 986 - pseudogene predicted gene 5313
Gm38863 6 93194131 to 93238995 44864 + lncRNA gene predicted gene, 38863
Gm43923 6 93194941 to 93197851 2910 + unclassified gene predicted gene, 43923
Tssr57803 6 93234056 to 93234069 13 + TSS region transcription start site region 57803
Gm44220 6 93241720 to 93244206 2486 + unclassified gene predicted gene, 44220
Tssr57804 6 93241982 to 93241987 5 + TSS region transcription start site region 57804
Obrq1 6 112004738 to 92607306 -19397432 QTL obesity resistance QTL 1
Bmiq4 6 146429238 to 92607306 -53821932 QTL body mass index QTL 4