Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:91386495-92796506

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209 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq9 6 38669625 to 92607450 53937825 QTL circadian period of locomotor activity 9
Arrd1 6 75544356 to 92607450 17063094 QTL age-related retinal degeneration 1
wa1l 6 78629504 to 92040033 13410529 heritable phenotypic marker waved 1-like
Wnt7a 6 91363981 to 91411363 47382 - protein coding gene wingless-type MMTV integration site family, member 7A
Cpgi17735 6 91408680 to 91408835 155 CpG island CpG island 17735
Cpgi17736 6 91409773 to 91412227 2454 CpG island CpG island 17736
Tssr62076 6 91411320 to 91411331 11 - TSS region transcription start site region 62076
Tssr62077 6 91411341 to 91411360 19 - TSS region transcription start site region 62077
Tssr62078 6 91411363 to 91411373 10 - TSS region transcription start site region 62078
Gm30437 6 91411540 to 91412716 1176 + lncRNA gene predicted gene, 30437
Vmn1r-ps35 6 91428272 to 91428806 534 - pseudogene vomeronasal 1 receptor, pseudogene 35
Gm4575 6 91428883 to 91429884 1001 + pseudogene predicted gene 4575
Vmn1r-ps36 6 91430083 to 91430484 401 - pseudogene vomeronasal 1 receptor, pseudogene 36
4930471M09Rik 6 91430460 to 91440854 10394 - lincRNA gene RIKEN cDNA 4930471M09 gene
Cpgi17737 6 91440724 to 91441675 951 CpG island CpG island 17737
Tssr62079 6 91440867 to 91440919 52 - TSS region transcription start site region 62079
Tssr57722 6 91440964 to 91441028 64 + TSS region transcription start site region 57722
1810044D09Rik 6 91440987 to 91441755 768 + lincRNA gene RIKEN cDNA 1810044D09 gene
Gm44629 6 91445027 to 91446866 1839 - pseudogene predicted gene 44629
Chchd4 6 91464276 to 91473423 9147 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 4
Cpgi17738 6 91472861 to 91474248 1387 CpG island CpG island 17738
Tssr62080 6 91473361 to 91473470 109 - TSS region transcription start site region 62080
Tssr62081 6 91473504 to 91473552 48 - TSS region transcription start site region 62081
Tssr57723 6 91473695 to 91473787 92 + TSS region transcription start site region 57723
Tmem43 6 91473751 to 91488458 14707 + protein coding gene transmembrane protein 43
Tssr57724 6 91476772 to 91476802 30 + TSS region transcription start site region 57724
Xpc 6 91489305 to 91515888 26583 - protein coding gene xeroderma pigmentosum, complementation group C
Tssr62082 6 91490017 to 91490030 13 - TSS region transcription start site region 62082
Tssr62083 6 91491080 to 91491086 6 - TSS region transcription start site region 62083
Tssr62084 6 91493137 to 91493162 25 - TSS region transcription start site region 62084
Tssr62085 6 91493164 to 91493181 17 - TSS region transcription start site region 62085
Tssr62086 6 91493184 to 91493213 29 - TSS region transcription start site region 62086
Tssr62087 6 91493231 to 91493248 17 - TSS region transcription start site region 62087
Cpgi17739 6 91515281 to 91516435 1154 CpG island CpG island 17739
Tssr62088 6 91515796 to 91515859 63 - TSS region transcription start site region 62088
Tssr62089 6 91515878 to 91515889 11 - TSS region transcription start site region 62089
Tssr57725 6 91515969 to 91515993 24 + TSS region transcription start site region 57725
Tssr57726 6 91516006 to 91516058 52 + TSS region transcription start site region 57726
Lsm3 6 91516035 to 91522620 6585 + protein coding gene LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
Gm45216 6 91522409 to 91532379 9970 + sense overlapping lncRNA gene predicted gene 45216
D6Mit1005 6 91550615 to 91550724 109 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 1005
Cpgi17740 6 91577017 to 91577206 189 CpG island CpG island 17740
Gm45215 6 91594758 to 91595152 394 + pseudogene predicted gene 45215
Gm45218 6 91599232 to 91605514 6282 + lincRNA gene predicted gene 45218
Gm40387 6 91660736 to 91679676 18940 + lncRNA gene predicted gene, 40387
Gm30628 6 91663408 to 91679617 16209 - lncRNA gene predicted gene, 30628
Tssr62090 6 91668502 to 91668521 19 - TSS region transcription start site region 62090
Tssr62091 6 91668537 to 91668545 8 - TSS region transcription start site region 62091
Gm45217 6 91678198 to 91679223 1025 - unclassified gene predicted gene 45217
Tssr57727 6 91683594 to 91683644 50 + TSS region transcription start site region 57727
Cpgi17741 6 91683598 to 91684811 1213 CpG island CpG island 17741
Slc6a6 6 91684053 to 91759066 75013 + protein coding gene solute carrier family 6 (neurotransmitter transporter, taurine), member 6
Tssr57728 6 91684061 to 91684132 71 + TSS region transcription start site region 57728
Tssr57729 6 91684177 to 91684191 14 + TSS region transcription start site region 57729
4930517G19Rik 6 91689933 to 91691608 1675 - unclassified gene RIKEN cDNA 4930517G19 gene
Tssr57730 6 91690393 to 91690440 47 + TSS region transcription start site region 57730
Tssr62092 6 91692726 to 91692727 1 - TSS region transcription start site region 62092
Tssr57731 6 91699109 to 91699121 12 + TSS region transcription start site region 57731
Tssr57732 6 91699138 to 91699155 17 + TSS region transcription start site region 57732
Tssr57733 6 91701649 to 91701662 13 + TSS region transcription start site region 57733
Tssr57734 6 91705804 to 91705832 28 + TSS region transcription start site region 57734
Tssr57735 6 91705850 to 91705879 29 + TSS region transcription start site region 57735
Tssr1938 6 91706257 to 91706267 10 - TSS region transcription start site region 1938
Gm45828 6 91709406 to 91711241 1835 + unclassified gene predicted gene 45828
Tssr57736 6 91709441 to 91709451 10 + TSS region transcription start site region 57736
Gm44981 6 91711336 to 91713278 1942 - unclassified gene predicted gene 44981
Tssr62093 6 91716343 to 91716370 27 - TSS region transcription start site region 62093
Tssr57737 6 91721718 to 91721740 22 + TSS region transcription start site region 57737
Tssr57738 6 91724930 to 91724944 14 + TSS region transcription start site region 57738
Tssr57739 6 91726072 to 91726088 16 + TSS region transcription start site region 57739
Tssr57740 6 91726110 to 91726132 22 + TSS region transcription start site region 57740
Tssr57741 6 91726184 to 91726206 22 + TSS region transcription start site region 57741
Tssr57742 6 91726207 to 91726229 22 + TSS region transcription start site region 57742
Tssr57743 6 91734854 to 91734860 6 + TSS region transcription start site region 57743
Tssr57744 6 91739170 to 91739181 11 + TSS region transcription start site region 57744
Tssr57745 6 91739227 to 91739231 4 + TSS region transcription start site region 57745
Tssr57746 6 91754969 to 91754980 11 + TSS region transcription start site region 57746
Tssr57747 6 91755158 to 91755174 16 + TSS region transcription start site region 57747
Tssr62094 6 91755231 to 91755237 6 - TSS region transcription start site region 62094
Tssr57748 6 91755997 to 91756017 20 + TSS region transcription start site region 57748
Tssr57749 6 91756143 to 91756157 14 + TSS region transcription start site region 57749
Tssr57750 6 91756493 to 91756520 27 + TSS region transcription start site region 57750
Tssr57751 6 91756594 to 91756624 30 + TSS region transcription start site region 57751
Tssr57752 6 91756983 to 91756994 11 + TSS region transcription start site region 57752
Tssr1939 6 91757117 to 91757122 5 + TSS region transcription start site region 1939
Tssr57753 6 91757819 to 91757829 10 + TSS region transcription start site region 57753
Tssr57754 6 91757918 to 91757925 7 + TSS region transcription start site region 57754
Tssr57755 6 91758009 to 91758021 12 + TSS region transcription start site region 57755
Tssr57756 6 91758042 to 91758061 19 + TSS region transcription start site region 57756
Tssr57757 6 91758079 to 91758086 7 + TSS region transcription start site region 57757
Tssr57758 6 91758110 to 91758122 12 + TSS region transcription start site region 57758
Tssr62095 6 91758326 to 91758352 26 - TSS region transcription start site region 62095
Tssr57759 6 91758335 to 91758346 11 + TSS region transcription start site region 57759
Tssr57760 6 91758391 to 91758402 11 + TSS region transcription start site region 57760
Tssr57761 6 91758408 to 91758419 11 + TSS region transcription start site region 57761
Tssr57762 6 91758436 to 91758460 24 + TSS region transcription start site region 57762
Tssr57763 6 91758463 to 91758484 21 + TSS region transcription start site region 57763
Tssr57764 6 91758488 to 91758508 20 + TSS region transcription start site region 57764
Tssr57765 6 91758528 to 91758541 13 + TSS region transcription start site region 57765
Tssr57766 6 91758550 to 91758567 17 + TSS region transcription start site region 57766
Tssr62096 6 91758601 to 91758634 33 - TSS region transcription start site region 62096
Tssr57767 6 91758617 to 91758638 21 + TSS region transcription start site region 57767
Tssr57768 6 91758640 to 91758648 8 + TSS region transcription start site region 57768
Tssr62097 6 91758816 to 91758841 25 - TSS region transcription start site region 62097
Tssr57769 6 91758832 to 91758848 16 + TSS region transcription start site region 57769
Tssr57770 6 91758939 to 91758959 20 + TSS region transcription start site region 57770
Grip2 6 91761509 to 91827250 65741 - protein coding gene glutamate receptor interacting protein 2
Tssr62098 6 91796241 to 91796249 8 - TSS region transcription start site region 62098
Tssr62099 6 91796250 to 91796266 16 - TSS region transcription start site region 62099
Cpgi17742 6 91807198 to 91807539 341 CpG island CpG island 17742
Tssr62100 6 91807390 to 91807411 21 - TSS region transcription start site region 62100
Tssr62101 6 91807424 to 91807456 32 - TSS region transcription start site region 62101
Cpgi17743 6 91843056 to 91844203 1147 CpG island CpG island 17743
Tssr62102 6 91843876 to 91843915 39 - TSS region transcription start site region 62102
Gm44712 6 91876910 to 91877985 1075 - unclassified gene predicted gene 44712
Cpgi17744 6 91877809 to 91878569 760 CpG island CpG island 17744
Tssr57771 6 91878034 to 91878089 55 + TSS region transcription start site region 57771
Ccdc174 6 91878053 to 91899843 21790 + protein coding gene coiled-coil domain containing 174
4930590J08Rik 6 91902809 to 91950725 47916 + protein coding gene RIKEN cDNA 4930590J08 gene
Tssr57772 6 91904212 to 91904273 61 + TSS region transcription start site region 57772
Tssr57773 6 91904276 to 91904281 5 + TSS region transcription start site region 57773
Gm44711 6 91938250 to 91939513 1263 - unclassified gene predicted gene 44711
Tssr57774 6 91939001 to 91939003 2 + TSS region transcription start site region 57774
Cpgi17745 6 91978405 to 91979650 1245 CpG island CpG island 17745
Tssr57775 6 91978851 to 91978913 62 + TSS region transcription start site region 57775
Fgd5 6 91978878 to 92076004 97126 + protein coding gene FYVE, RhoGEF and PH domain containing 5
Tssr57776 6 91978957 to 91978983 26 + TSS region transcription start site region 57776
Tssr57777 6 91983367 to 91983370 3 + TSS region transcription start site region 57777
Gm44095 6 92007550 to 92009480 1930 + unclassified gene predicted gene, 44095
Opfdc1 6 92012313 to 92012313 0 QTL open field distance from center 1
4930466I24Rik 6 92012394 to 92016117 3723 - antisense lncRNA gene RIKEN cDNA 4930466I24 gene
Tssr62103 6 92026448 to 92026450 2 - TSS region transcription start site region 62103
Idd20 6 92039950 to 92716697 676747 QTL insulin dependent diabetes susceptibility 20
D6Mit100 6 92039950 to 92040033 83 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 100
Cpgi17746 6 92090832 to 92092602 1770 CpG island CpG island 17746
Tssr57778 6 92091378 to 92091389 11 + TSS region transcription start site region 57778
Tssr57779 6 92091405 to 92091423 18 + TSS region transcription start site region 57779
Nr2c2 6 92091418 to 92173058 81640 + protein coding gene nuclear receptor subfamily 2, group C, member 2
Tssr57780 6 92091436 to 92091466 30 + TSS region transcription start site region 57780
Tssr57781 6 92091495 to 92091506 11 + TSS region transcription start site region 57781
Tssr57782 6 92091512 to 92091523 11 + TSS region transcription start site region 57782
Tssr57783 6 92091528 to 92091537 9 + TSS region transcription start site region 57783
Tssr57784 6 92091546 to 92091557 11 + TSS region transcription start site region 57784
Tssr57785 6 92092328 to 92092334 6 + TSS region transcription start site region 57785
Tssr57786 6 92092369 to 92092419 50 + TSS region transcription start site region 57786
Tssr57787 6 92103658 to 92103662 4 + TSS region transcription start site region 57787
Tssr57788 6 92136849 to 92136853 4 + TSS region transcription start site region 57788
Gm44249 6 92144489 to 92146293 1804 - unclassified gene predicted gene, 44249
Gm46967 6 92151011 to 92157410 6399 - lncRNA gene predicted gene, 46967
Tssr57789 6 92156978 to 92156982 4 + TSS region transcription start site region 57789
9430019H13Rik 6 92165991 to 92167015 1024 unclassified gene RIKEN cDNA 9430019H13 gene
Mrps25 6 92169525 to 92184033 14508 - protein coding gene mitochondrial ribosomal protein S25
Tssr62104 6 92177452 to 92177456 4 - TSS region transcription start site region 62104
Cpgi17747 6 92183532 to 92184275 743 CpG island CpG island 17747
Tssr62105 6 92183972 to 92184038 66 - TSS region transcription start site region 62105
Rbsn 6 92186712 to 92214904 28192 - protein coding gene rabenosyn, RAB effector
Cpgi17748 6 92214050 to 92215115 1065 CpG island CpG island 17748
Tssr62106 6 92214843 to 92214877 34 - TSS region transcription start site region 62106
Tssr62107 6 92214897 to 92214906 9 - TSS region transcription start site region 62107
D6Mit362.1 6 92236417 to 92236579 162 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 362.1
D6Mit362 6 92236561 to 92236675 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 362
Trh 6 92242061 to 92244650 2589 - protein coding gene thyrotropin releasing hormone
Tssr62108 6 92242461 to 92242472 11 - TSS region transcription start site region 62108
Tssr62109 6 92242672 to 92242708 36 - TSS region transcription start site region 62109
Tssr62110 6 92242741 to 92242757 16 - TSS region transcription start site region 62110
Tssr62111 6 92242891 to 92242905 14 - TSS region transcription start site region 62111
Cpgi17749 6 92244292 to 92245001 709 CpG island CpG island 17749
Tssr62112 6 92244645 to 92244649 4 - TSS region transcription start site region 62112
Tssr62113 6 92246380 to 92246416 36 - TSS region transcription start site region 62113
Gm30688 6 92269224 to 92315813 46589 + lncRNA gene predicted gene, 30688
Gm44803 6 92271417 to 92271572 155 - pseudogene predicted gene 44803
Gm44024 6 92280918 to 92281393 475 - pseudogene predicted gene, 44024
Tssr57790 6 92306105 to 92306113 8 + TSS region transcription start site region 57790
Prickle2 6 92370908 to 92706155 335247 - protein coding gene prickle planar cell polarity protein 2
Cpgi17750 6 92376072 to 92376642 570 CpG island CpG island 17750
Gm38862 6 92403581 to 92422323 18742 + lncRNA gene predicted gene, 38862
Tssr62114 6 92418055 to 92418058 3 - TSS region transcription start site region 62114
Gm38861 6 92422455 to 92424686 2231 + lncRNA gene predicted gene, 38861
Tssr62115 6 92427261 to 92427264 3 - TSS region transcription start site region 62115
Tssr57791 6 92449187 to 92449197 10 + TSS region transcription start site region 57791
Tssr62116 6 92450047 to 92450061 14 - TSS region transcription start site region 62116
Tssr62117 6 92480975 to 92480992 17 - TSS region transcription start site region 62117
Tssr62118 6 92481164 to 92481214 50 - TSS region transcription start site region 62118
Tssr62119 6 92481343 to 92481405 62 - TSS region transcription start site region 62119
Tssr62120 6 92481642 to 92481646 4 - TSS region transcription start site region 62120
Tssr62121 6 92534835 to 92534850 15 - TSS region transcription start site region 62121
Tssr62122 6 92534855 to 92534890 35 - TSS region transcription start site region 62122
Tssr62123 6 92534902 to 92534913 11 - TSS region transcription start site region 62123
Gm17797 6 92561777 to 92562773 996 + pseudogene predicted gene, 17797
Gm5880 6 92564433 to 92565981 1548 - pseudogene predicted gene 5880
Tssr62124 6 92565602 to 92565640 38 - TSS region transcription start site region 62124
Tssr62125 6 92578499 to 92578503 4 - TSS region transcription start site region 62125
Pfat5 6 92607306 to 92607450 144 QTL predicted fat percentage 5
Sluc45 6 92607306 to 98258933 5651627 QTL susceptibility to lung cancer 45
D6Mit284 6 92607306 to 92607450 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 284
Tssr62126 6 92640787 to 92640800 13 - TSS region transcription start site region 62126
Tssr62127 6 92642343 to 92642347 4 - TSS region transcription start site region 62127
Tssr62128 6 92673468 to 92673471 3 - TSS region transcription start site region 62128
Tssr62129 6 92677853 to 92677856 3 - TSS region transcription start site region 62129
Cpgi17751 6 92705782 to 92706416 634 CpG island CpG island 17751