Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:90708996-91339002

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Iqsec1 6 90659596 to 90988458 328862 - protein coding gene IQ motif and Sec7 domain 1
Cpgi17725 6 90716067 to 90716750 683 CpG island CpG island 17725
Tssr62035 6 90716411 to 90716420 9 - TSS region transcription start site region 62035
Tssr62036 6 90716489 to 90716543 54 - TSS region transcription start site region 62036
Tssr62037 6 90731400 to 90731426 26 - TSS region transcription start site region 62037
Tssr62038 6 90731452 to 90731464 12 - TSS region transcription start site region 62038
Cpgi17726 6 90735638 to 90737500 1862 CpG island CpG island 17726
Tssr62039 6 90736112 to 90736151 39 - TSS region transcription start site region 62039
Tssr62040 6 90736756 to 90736777 21 - TSS region transcription start site region 62040
Tssr62041 6 90736778 to 90736817 39 - TSS region transcription start site region 62041
Tssr62042 6 90754281 to 90754292 11 - TSS region transcription start site region 62042
Tssr1935 6 90754980 to 90754997 17 - TSS region transcription start site region 1935
Tssr62043 6 90756769 to 90756780 11 - TSS region transcription start site region 62043
Tssr62044 6 90757461 to 90757472 11 - TSS region transcription start site region 62044
Tssr62045 6 90757486 to 90757534 48 - TSS region transcription start site region 62045
Tssr62046 6 90763937 to 90763951 14 - TSS region transcription start site region 62046
Cpgi17727 6 90764031 to 90764229 198 CpG island CpG island 17727
Tssr62047 6 90764297 to 90764309 12 - TSS region transcription start site region 62047
Tssr57695 6 90764423 to 90764454 31 + TSS region transcription start site region 57695
E130314K07Rik 6 90777741 to 90782080 4339 unclassified gene RIKEN cDNA E130314K07 gene
Tssr62048 6 90781282 to 90781286 4 - TSS region transcription start site region 62048
Tssr62049 6 90782024 to 90782035 11 - TSS region transcription start site region 62049
Tssr62050 6 90782037 to 90782066 29 - TSS region transcription start site region 62050
Tssr62051 6 90782510 to 90782529 19 - TSS region transcription start site region 62051
Gm44105 6 90793896 to 90794475 579 - sense intronic lncRNA gene predicted gene, 44105
Cpgi17728 6 90809961 to 90810356 395 CpG island CpG island 17728
Tssr62052 6 90810025 to 90810073 48 - TSS region transcription start site region 62052
Tssr62053 6 90810079 to 90810094 15 - TSS region transcription start site region 62053
Tssr62054 6 90810118 to 90810160 42 - TSS region transcription start site region 62054
Tssr62055 6 90810162 to 90810219 57 - TSS region transcription start site region 62055
Rpl21-ps12 6 90844981 to 90845460 479 - pseudogene ribosomal protein L21, pseudogene 12
D6Mit229 6 90846428 to 90846576 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 229
Gm25185 6 90857537 to 90857632 95 + snoRNA gene predicted gene, 25185
Tssr62056 6 90887111 to 90887114 3 - TSS region transcription start site region 62056
Tssr62057 6 90904299 to 90904307 8 - TSS region transcription start site region 62057
Tssr1936 6 90905706 to 90905718 12 + TSS region transcription start site region 1936
Ppp1r2-ps2 6 90905819 to 90906453 634 + pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 2
Tssr62058 6 90925095 to 90925098 3 - TSS region transcription start site region 62058
Tssr62059 6 90947184 to 90947185 1 - TSS region transcription start site region 62059
Cpgi17729 6 90987479 to 90989337 1858 CpG island CpG island 17729
Tssr62060 6 90988405 to 90988448 43 - TSS region transcription start site region 62060
Tssr62061 6 90988641 to 90988680 39 - TSS region transcription start site region 62061
Tssr62062 6 90988681 to 90988692 11 - TSS region transcription start site region 62062
Tssr62063 6 90988770 to 90988826 56 - TSS region transcription start site region 62063
Gm38860 6 91009975 to 91010670 695 + lncRNA gene predicted gene, 38860
Nup210 6 91013068 to 91116829 103761 - protein coding gene nucleoporin 210
Tssr62064 6 91023996 to 91024002 6 - TSS region transcription start site region 62064
Tssr62065 6 91024036 to 91024040 4 - TSS region transcription start site region 62065
Tssr62066 6 91024081 to 91024086 5 - TSS region transcription start site region 62066
Tssr62067 6 91030080 to 91030084 4 - TSS region transcription start site region 62067
Tssr62068 6 91110353 to 91110356 3 - TSS region transcription start site region 62068
Tssr57696 6 91110593 to 91110612 19 + TSS region transcription start site region 57696
Cpgi17730 6 91115897 to 91117457 1560 CpG island CpG island 17730
Tssr62069 6 91116471 to 91116480 9 - TSS region transcription start site region 62069
Tssr62070 6 91116761 to 91116775 14 - TSS region transcription start site region 62070
Tssr62071 6 91116785 to 91116832 47 - TSS region transcription start site region 62071
Tssr62072 6 91116836 to 91116858 22 - TSS region transcription start site region 62072
Tssr62073 6 91117008 to 91117023 15 - TSS region transcription start site region 62073
Gm30364 6 91117102 to 91126974 9872 + lncRNA gene predicted gene, 30364
Gm44278 6 91119824 to 91120935 1111 - lincRNA gene predicted gene, 44278
Cpgi17731 6 91156504 to 91157150 646 CpG island CpG island 17731
Hdac11 6 91156670 to 91174692 18022 + protein coding gene histone deacetylase 11
Tssr57697 6 91156715 to 91156738 23 + TSS region transcription start site region 57697
Tssr57698 6 91156740 to 91156765 25 + TSS region transcription start site region 57698
Tssr57699 6 91156772 to 91156827 55 + TSS region transcription start site region 57699
Tssr57700 6 91157083 to 91157099 16 + TSS region transcription start site region 57700
Tssr57701 6 91157251 to 91157262 11 + TSS region transcription start site region 57701
Tssr57702 6 91157373 to 91157391 18 + TSS region transcription start site region 57702
Gm14573 6 91158713 to 91159256 543 - antisense lncRNA gene predicted gene 14573
Gm44002 6 91173425 to 91174018 593 - unclassified gene predicted gene, 44002
4930402H05Rik 6 91207216 to 91210044 2828 - unclassified gene RIKEN cDNA 4930402H05 gene
Cpgi17732 6 91212649 to 91213188 539 CpG island CpG island 17732
Fbln2 6 91212764 to 91272540 59776 + protein coding gene fibulin 2
Tssr57703 6 91212787 to 91212798 11 + TSS region transcription start site region 57703
Tssr57704 6 91212799 to 91212844 45 + TSS region transcription start site region 57704
Tssr57705 6 91212859 to 91212870 11 + TSS region transcription start site region 57705
Cpgi17733 6 91233141 to 91233538 397 CpG island CpG island 17733
Tssr57706 6 91233210 to 91233219 9 + TSS region transcription start site region 57706
Tssr57707 6 91233478 to 91233492 14 + TSS region transcription start site region 57707
Tssr57708 6 91233496 to 91233507 11 + TSS region transcription start site region 57708
Tssr1937 6 91233542 to 91233552 10 + TSS region transcription start site region 1937
Tssr57709 6 91233752 to 91233768 16 + TSS region transcription start site region 57709
Tssr57710 6 91233794 to 91233806 12 + TSS region transcription start site region 57710
Tssr62074 6 91233912 to 91233964 52 - TSS region transcription start site region 62074
Tssr57711 6 91234018 to 91234027 9 + TSS region transcription start site region 57711
Tssr57712 6 91234216 to 91234237 21 + TSS region transcription start site region 57712
Tssr57713 6 91234290 to 91234301 11 + TSS region transcription start site region 57713
Tssr57714 6 91252573 to 91252576 3 + TSS region transcription start site region 57714
Tssr57715 6 91265878 to 91265892 14 + TSS region transcription start site region 57715
Tssr57716 6 91265930 to 91265937 7 + TSS region transcription start site region 57716
Tssr57717 6 91265946 to 91265959 13 + TSS region transcription start site region 57717
Tssr57718 6 91265962 to 91265972 10 + TSS region transcription start site region 57718
Tssr57719 6 91270030 to 91270054 24 + TSS region transcription start site region 57719
Tssr57720 6 91272101 to 91272113 12 + TSS region transcription start site region 57720
Tssr57721 6 91272470 to 91272483 13 + TSS region transcription start site region 57721
Cpgi17734 6 91284995 to 91286450 1455 CpG island CpG island 17734
Gm46986 6 91320565 to 91321035 470 - pseudogene predicted gene, 46986
Tssr62075 6 91321040 to 91321049 9 - TSS region transcription start site region 62075