Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:90651495-93531506

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371 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq9 6 38669625 to 92607450 53937825 QTL circadian period of locomotor activity 9
Bbaa20 6 71322621 to 93464093 22141472 QTL B.burgdorferi-associated arthritis 20
Arrd1 6 75544356 to 92607450 17063094 QTL age-related retinal degeneration 1
wa1l 6 78629504 to 92040033 13410529 heritable phenotypic marker waved 1-like
Iqsec1 6 90659596 to 90988458 328862 - protein coding gene IQ motif and Sec7 domain 1
Tssr62023 6 90659866 to 90659872 6 - TSS region transcription start site region 62023
Tssr62024 6 90660334 to 90660336 2 - TSS region transcription start site region 62024
Tssr62025 6 90661752 to 90661770 18 - TSS region transcription start site region 62025
Tssr62026 6 90662053 to 90662064 11 - TSS region transcription start site region 62026
Tssr62027 6 90662099 to 90662119 20 - TSS region transcription start site region 62027
Tssr62028 6 90662170 to 90662220 50 - TSS region transcription start site region 62028
Tssr62029 6 90662249 to 90662270 21 - TSS region transcription start site region 62029
Tssr62030 6 90662725 to 90662763 38 - TSS region transcription start site region 62030
Tssr57694 6 90662808 to 90662829 21 + TSS region transcription start site region 57694
Tssr62031 6 90662868 to 90662885 17 - TSS region transcription start site region 62031
Tssr62032 6 90663050 to 90663061 11 - TSS region transcription start site region 62032
Tssr62033 6 90670469 to 90670495 26 - TSS region transcription start site region 62033
Gm24816 6 90681370 to 90681520 150 - miRNA gene predicted gene, 24816
Gm44123 6 90689731 to 90690829 1098 + antisense lncRNA gene predicted gene, 44123
Tssr62034 6 90689757 to 90689789 32 - TSS region transcription start site region 62034
Cpgi17725 6 90716067 to 90716750 683 CpG island CpG island 17725
Tssr62035 6 90716411 to 90716420 9 - TSS region transcription start site region 62035
Tssr62036 6 90716489 to 90716543 54 - TSS region transcription start site region 62036
Tssr62037 6 90731400 to 90731426 26 - TSS region transcription start site region 62037
Tssr62038 6 90731452 to 90731464 12 - TSS region transcription start site region 62038
Cpgi17726 6 90735638 to 90737500 1862 CpG island CpG island 17726
Tssr62039 6 90736112 to 90736151 39 - TSS region transcription start site region 62039
Tssr62040 6 90736756 to 90736777 21 - TSS region transcription start site region 62040
Tssr62041 6 90736778 to 90736817 39 - TSS region transcription start site region 62041
Tssr62042 6 90754281 to 90754292 11 - TSS region transcription start site region 62042
Tssr1935 6 90754980 to 90754997 17 - TSS region transcription start site region 1935
Tssr62043 6 90756769 to 90756780 11 - TSS region transcription start site region 62043
Tssr62044 6 90757461 to 90757472 11 - TSS region transcription start site region 62044
Tssr62045 6 90757486 to 90757534 48 - TSS region transcription start site region 62045
Tssr62046 6 90763937 to 90763951 14 - TSS region transcription start site region 62046
Cpgi17727 6 90764031 to 90764229 198 CpG island CpG island 17727
Tssr62047 6 90764297 to 90764309 12 - TSS region transcription start site region 62047
Tssr57695 6 90764423 to 90764454 31 + TSS region transcription start site region 57695
E130314K07Rik 6 90777741 to 90782080 4339 unclassified gene RIKEN cDNA E130314K07 gene
Tssr62048 6 90781282 to 90781286 4 - TSS region transcription start site region 62048
Tssr62049 6 90782024 to 90782035 11 - TSS region transcription start site region 62049
Tssr62050 6 90782037 to 90782066 29 - TSS region transcription start site region 62050
Tssr62051 6 90782510 to 90782529 19 - TSS region transcription start site region 62051
Gm44105 6 90793896 to 90794475 579 - sense intronic lncRNA gene predicted gene, 44105
Cpgi17728 6 90809961 to 90810356 395 CpG island CpG island 17728
Tssr62052 6 90810025 to 90810073 48 - TSS region transcription start site region 62052
Tssr62053 6 90810079 to 90810094 15 - TSS region transcription start site region 62053
Tssr62054 6 90810118 to 90810160 42 - TSS region transcription start site region 62054
Tssr62055 6 90810162 to 90810219 57 - TSS region transcription start site region 62055
Rpl21-ps12 6 90844981 to 90845460 479 - pseudogene ribosomal protein L21, pseudogene 12
D6Mit229 6 90846428 to 90846576 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 229
Gm25185 6 90857537 to 90857632 95 + snoRNA gene predicted gene, 25185
Tssr62056 6 90887111 to 90887114 3 - TSS region transcription start site region 62056
Tssr62057 6 90904299 to 90904307 8 - TSS region transcription start site region 62057
Tssr1936 6 90905706 to 90905718 12 + TSS region transcription start site region 1936
Ppp1r2-ps2 6 90905819 to 90906453 634 + pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 2
Tssr62058 6 90925095 to 90925098 3 - TSS region transcription start site region 62058
Tssr62059 6 90947184 to 90947185 1 - TSS region transcription start site region 62059
Cpgi17729 6 90987479 to 90989337 1858 CpG island CpG island 17729
Tssr62060 6 90988405 to 90988448 43 - TSS region transcription start site region 62060
Tssr62061 6 90988641 to 90988680 39 - TSS region transcription start site region 62061
Tssr62062 6 90988681 to 90988692 11 - TSS region transcription start site region 62062
Tssr62063 6 90988770 to 90988826 56 - TSS region transcription start site region 62063
Gm38860 6 91009975 to 91010670 695 + lncRNA gene predicted gene, 38860
Nup210 6 91013068 to 91116829 103761 - protein coding gene nucleoporin 210
Tssr62064 6 91023996 to 91024002 6 - TSS region transcription start site region 62064
Tssr62065 6 91024036 to 91024040 4 - TSS region transcription start site region 62065
Tssr62066 6 91024081 to 91024086 5 - TSS region transcription start site region 62066
Tssr62067 6 91030080 to 91030084 4 - TSS region transcription start site region 62067
Tssr62068 6 91110353 to 91110356 3 - TSS region transcription start site region 62068
Tssr57696 6 91110593 to 91110612 19 + TSS region transcription start site region 57696
Cpgi17730 6 91115897 to 91117457 1560 CpG island CpG island 17730
Tssr62069 6 91116471 to 91116480 9 - TSS region transcription start site region 62069
Tssr62070 6 91116761 to 91116775 14 - TSS region transcription start site region 62070
Tssr62071 6 91116785 to 91116832 47 - TSS region transcription start site region 62071
Tssr62072 6 91116836 to 91116858 22 - TSS region transcription start site region 62072
Tssr62073 6 91117008 to 91117023 15 - TSS region transcription start site region 62073
Gm30364 6 91117102 to 91126974 9872 + lncRNA gene predicted gene, 30364
Gm44278 6 91119824 to 91120935 1111 - lincRNA gene predicted gene, 44278
Cpgi17731 6 91156504 to 91157150 646 CpG island CpG island 17731
Hdac11 6 91156670 to 91174692 18022 + protein coding gene histone deacetylase 11
Tssr57697 6 91156715 to 91156738 23 + TSS region transcription start site region 57697
Tssr57698 6 91156740 to 91156765 25 + TSS region transcription start site region 57698
Tssr57699 6 91156772 to 91156827 55 + TSS region transcription start site region 57699
Tssr57700 6 91157083 to 91157099 16 + TSS region transcription start site region 57700
Tssr57701 6 91157251 to 91157262 11 + TSS region transcription start site region 57701
Tssr57702 6 91157373 to 91157391 18 + TSS region transcription start site region 57702
Gm14573 6 91158713 to 91159256 543 - antisense lncRNA gene predicted gene 14573
Gm44002 6 91173425 to 91174018 593 - unclassified gene predicted gene, 44002
4930402H05Rik 6 91207216 to 91210044 2828 - unclassified gene RIKEN cDNA 4930402H05 gene
Cpgi17732 6 91212649 to 91213188 539 CpG island CpG island 17732
Fbln2 6 91212764 to 91272540 59776 + protein coding gene fibulin 2
Tssr57703 6 91212787 to 91212798 11 + TSS region transcription start site region 57703
Tssr57704 6 91212799 to 91212844 45 + TSS region transcription start site region 57704
Tssr57705 6 91212859 to 91212870 11 + TSS region transcription start site region 57705
Cpgi17733 6 91233141 to 91233538 397 CpG island CpG island 17733
Tssr57706 6 91233210 to 91233219 9 + TSS region transcription start site region 57706
Tssr57707 6 91233478 to 91233492 14 + TSS region transcription start site region 57707
Tssr57708 6 91233496 to 91233507 11 + TSS region transcription start site region 57708
Tssr1937 6 91233542 to 91233552 10 + TSS region transcription start site region 1937
Tssr57709 6 91233752 to 91233768 16 + TSS region transcription start site region 57709
Tssr57710 6 91233794 to 91233806 12 + TSS region transcription start site region 57710
Tssr62074 6 91233912 to 91233964 52 - TSS region transcription start site region 62074
Tssr57711 6 91234018 to 91234027 9 + TSS region transcription start site region 57711
Tssr57712 6 91234216 to 91234237 21 + TSS region transcription start site region 57712
Tssr57713 6 91234290 to 91234301 11 + TSS region transcription start site region 57713
Tssr57714 6 91252573 to 91252576 3 + TSS region transcription start site region 57714
Tssr57715 6 91265878 to 91265892 14 + TSS region transcription start site region 57715
Tssr57716 6 91265930 to 91265937 7 + TSS region transcription start site region 57716
Tssr57717 6 91265946 to 91265959 13 + TSS region transcription start site region 57717
Tssr57718 6 91265962 to 91265972 10 + TSS region transcription start site region 57718
Tssr57719 6 91270030 to 91270054 24 + TSS region transcription start site region 57719
Tssr57720 6 91272101 to 91272113 12 + TSS region transcription start site region 57720
Tssr57721 6 91272470 to 91272483 13 + TSS region transcription start site region 57721
Cpgi17734 6 91284995 to 91286450 1455 CpG island CpG island 17734
Gm46986 6 91320565 to 91321035 470 - pseudogene predicted gene, 46986
Tssr62075 6 91321040 to 91321049 9 - TSS region transcription start site region 62075
Wnt7a 6 91363981 to 91411363 47382 - protein coding gene wingless-type MMTV integration site family, member 7A
Cpgi17735 6 91408680 to 91408835 155 CpG island CpG island 17735
Cpgi17736 6 91409773 to 91412227 2454 CpG island CpG island 17736
Tssr62076 6 91411320 to 91411331 11 - TSS region transcription start site region 62076
Tssr62077 6 91411341 to 91411360 19 - TSS region transcription start site region 62077
Tssr62078 6 91411363 to 91411373 10 - TSS region transcription start site region 62078
Gm30437 6 91411540 to 91412716 1176 + lncRNA gene predicted gene, 30437
Vmn1r-ps35 6 91428272 to 91428806 534 - pseudogene vomeronasal 1 receptor, pseudogene 35
Gm4575 6 91428883 to 91429884 1001 + pseudogene predicted gene 4575
Vmn1r-ps36 6 91430083 to 91430484 401 - pseudogene vomeronasal 1 receptor, pseudogene 36
4930471M09Rik 6 91430460 to 91440854 10394 - lincRNA gene RIKEN cDNA 4930471M09 gene
Cpgi17737 6 91440724 to 91441675 951 CpG island CpG island 17737
Tssr62079 6 91440867 to 91440919 52 - TSS region transcription start site region 62079
Tssr57722 6 91440964 to 91441028 64 + TSS region transcription start site region 57722
1810044D09Rik 6 91440987 to 91441755 768 + lincRNA gene RIKEN cDNA 1810044D09 gene
Gm44629 6 91445027 to 91446866 1839 - pseudogene predicted gene 44629
Chchd4 6 91464276 to 91473423 9147 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 4
Cpgi17738 6 91472861 to 91474248 1387 CpG island CpG island 17738
Tssr62080 6 91473361 to 91473470 109 - TSS region transcription start site region 62080
Tssr62081 6 91473504 to 91473552 48 - TSS region transcription start site region 62081
Tssr57723 6 91473695 to 91473787 92 + TSS region transcription start site region 57723
Tmem43 6 91473751 to 91488458 14707 + protein coding gene transmembrane protein 43
Tssr57724 6 91476772 to 91476802 30 + TSS region transcription start site region 57724
Xpc 6 91489305 to 91515888 26583 - protein coding gene xeroderma pigmentosum, complementation group C
Tssr62082 6 91490017 to 91490030 13 - TSS region transcription start site region 62082
Tssr62083 6 91491080 to 91491086 6 - TSS region transcription start site region 62083
Tssr62084 6 91493137 to 91493162 25 - TSS region transcription start site region 62084
Tssr62085 6 91493164 to 91493181 17 - TSS region transcription start site region 62085
Tssr62086 6 91493184 to 91493213 29 - TSS region transcription start site region 62086
Tssr62087 6 91493231 to 91493248 17 - TSS region transcription start site region 62087
Cpgi17739 6 91515281 to 91516435 1154 CpG island CpG island 17739
Tssr62088 6 91515796 to 91515859 63 - TSS region transcription start site region 62088
Tssr62089 6 91515878 to 91515889 11 - TSS region transcription start site region 62089
Tssr57725 6 91515969 to 91515993 24 + TSS region transcription start site region 57725
Tssr57726 6 91516006 to 91516058 52 + TSS region transcription start site region 57726
Lsm3 6 91516035 to 91522620 6585 + protein coding gene LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
Gm45216 6 91522409 to 91532379 9970 + sense overlapping lncRNA gene predicted gene 45216
D6Mit1005 6 91550615 to 91550724 109 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 1005
Cpgi17740 6 91577017 to 91577206 189 CpG island CpG island 17740
Gm45215 6 91594758 to 91595152 394 + pseudogene predicted gene 45215
Gm45218 6 91599232 to 91605514 6282 + lincRNA gene predicted gene 45218
Gm40387 6 91660736 to 91679676 18940 + lncRNA gene predicted gene, 40387
Gm30628 6 91663408 to 91679617 16209 - lncRNA gene predicted gene, 30628
Tssr62090 6 91668502 to 91668521 19 - TSS region transcription start site region 62090
Tssr62091 6 91668537 to 91668545 8 - TSS region transcription start site region 62091
Gm45217 6 91678198 to 91679223 1025 - unclassified gene predicted gene 45217
Tssr57727 6 91683594 to 91683644 50 + TSS region transcription start site region 57727
Cpgi17741 6 91683598 to 91684811 1213 CpG island CpG island 17741
Slc6a6 6 91684053 to 91759066 75013 + protein coding gene solute carrier family 6 (neurotransmitter transporter, taurine), member 6
Tssr57728 6 91684061 to 91684132 71 + TSS region transcription start site region 57728
Tssr57729 6 91684177 to 91684191 14 + TSS region transcription start site region 57729
4930517G19Rik 6 91689933 to 91691608 1675 - unclassified gene RIKEN cDNA 4930517G19 gene
Tssr57730 6 91690393 to 91690440 47 + TSS region transcription start site region 57730
Tssr62092 6 91692726 to 91692727 1 - TSS region transcription start site region 62092
Tssr57731 6 91699109 to 91699121 12 + TSS region transcription start site region 57731
Tssr57732 6 91699138 to 91699155 17 + TSS region transcription start site region 57732
Tssr57733 6 91701649 to 91701662 13 + TSS region transcription start site region 57733
Tssr57734 6 91705804 to 91705832 28 + TSS region transcription start site region 57734
Tssr57735 6 91705850 to 91705879 29 + TSS region transcription start site region 57735
Tssr1938 6 91706257 to 91706267 10 - TSS region transcription start site region 1938
Gm45828 6 91709406 to 91711241 1835 + unclassified gene predicted gene 45828
Tssr57736 6 91709441 to 91709451 10 + TSS region transcription start site region 57736
Gm44981 6 91711336 to 91713278 1942 - unclassified gene predicted gene 44981
Tssr62093 6 91716343 to 91716370 27 - TSS region transcription start site region 62093
Tssr57737 6 91721718 to 91721740 22 + TSS region transcription start site region 57737
Tssr57738 6 91724930 to 91724944 14 + TSS region transcription start site region 57738
Tssr57739 6 91726072 to 91726088 16 + TSS region transcription start site region 57739
Tssr57740 6 91726110 to 91726132 22 + TSS region transcription start site region 57740
Tssr57741 6 91726184 to 91726206 22 + TSS region transcription start site region 57741
Tssr57742 6 91726207 to 91726229 22 + TSS region transcription start site region 57742
Tssr57743 6 91734854 to 91734860 6 + TSS region transcription start site region 57743
Tssr57744 6 91739170 to 91739181 11 + TSS region transcription start site region 57744
Tssr57745 6 91739227 to 91739231 4 + TSS region transcription start site region 57745
Tssr57746 6 91754969 to 91754980 11 + TSS region transcription start site region 57746
Tssr57747 6 91755158 to 91755174 16 + TSS region transcription start site region 57747
Tssr62094 6 91755231 to 91755237 6 - TSS region transcription start site region 62094
Tssr57748 6 91755997 to 91756017 20 + TSS region transcription start site region 57748
Tssr57749 6 91756143 to 91756157 14 + TSS region transcription start site region 57749
Tssr57750 6 91756493 to 91756520 27 + TSS region transcription start site region 57750
Tssr57751 6 91756594 to 91756624 30 + TSS region transcription start site region 57751
Tssr57752 6 91756983 to 91756994 11 + TSS region transcription start site region 57752
Tssr1939 6 91757117 to 91757122 5 + TSS region transcription start site region 1939
Tssr57753 6 91757819 to 91757829 10 + TSS region transcription start site region 57753