Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:90382249-90942270

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(6Vmn1r40-Aldh1l1)1Anl 6 89711261 to 90599171 887910 chromosomal deletion deletion, Chr 6, Argonne National Laboratory 1
Zxdc 6 90369492 to 90403490 33998 + protein coding gene ZXD family zinc finger C
Tssr57645 6 90384493 to 90384533 40 + TSS region transcription start site region 57645
C030015A19Rik 6 90386807 to 90389357 2550 + unclassified gene RIKEN cDNA C030015A19 gene
Cfap100 6 90403479 to 90428797 25318 - protein coding gene cilia and flagella associated protein 100
Cpgi17720 6 90428378 to 90428890 512 CpG island CpG island 17720
Tssr62021 6 90428401 to 90428455 54 - TSS region transcription start site region 62021
Tssr57646 6 90428520 to 90428565 45 + TSS region transcription start site region 57646
Gm44117 6 90459711 to 90461468 1757 - lincRNA gene predicted gene, 44117
Cpgi17721 6 90461806 to 90463843 2037 CpG island CpG island 17721
Tssr57647 6 90462562 to 90462587 25 + TSS region transcription start site region 57647
Klf15 6 90462576 to 90475238 12662 + protein coding gene Kruppel-like factor 15
Tssr57648 6 90462588 to 90462607 19 + TSS region transcription start site region 57648
Tssr57649 6 90462614 to 90462636 22 + TSS region transcription start site region 57649
Tssr57650 6 90465256 to 90465277 21 + TSS region transcription start site region 57650
Tssr57651 6 90465287 to 90465301 14 + TSS region transcription start site region 57651
Tssr57652 6 90466281 to 90466292 11 + TSS region transcription start site region 57652
Tssr57653 6 90466311 to 90466330 19 + TSS region transcription start site region 57653
Tssr57654 6 90474297 to 90474307 10 + TSS region transcription start site region 57654
Gm44421 6 90478466 to 90479686 1220 + lincRNA gene predicted gene, 44421
D6Mit130 6 90481724 to 90481927 203 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 130
Tssr57655 6 90486377 to 90486388 11 + TSS region transcription start site region 57655
Gm45901 6 90486393 to 90519480 33087 + lincRNA gene predicted gene 45901
Tssr57656 6 90486410 to 90486430 20 + TSS region transcription start site region 57656
D6Mit363 6 90486716 to 90486827 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 363
Gm44236 6 90513302 to 90513814 512 + unclassified gene predicted gene, 44236
Cpgi17722 6 90538044 to 90538230 186 CpG island CpG island 17722
Tssr57657 6 90540752 to 90540781 29 + TSS region transcription start site region 57657
Tssr57658 6 90540786 to 90540834 48 + TSS region transcription start site region 57658
Cpgi17723 6 90550389 to 90550551 162 CpG island CpG island 17723
Tssr57659 6 90550529 to 90550570 41 + TSS region transcription start site region 57659
Tssr57660 6 90550753 to 90550764 11 + TSS region transcription start site region 57660
Tssr57661 6 90550789 to 90550849 60 + TSS region transcription start site region 57661
Aldh1l1 6 90550793 to 90599171 48378 + protein coding gene aldehyde dehydrogenase 1 family, member L1
Tssr57662 6 90550863 to 90550871 8 + TSS region transcription start site region 57662
Tssr57663 6 90552151 to 90552165 14 + TSS region transcription start site region 57663
Tssr57664 6 90552183 to 90552194 11 + TSS region transcription start site region 57664
Tssr57665 6 90552204 to 90552206 2 + TSS region transcription start site region 57665
Tssr57666 6 90552249 to 90552262 13 + TSS region transcription start site region 57666
Tssr57667 6 90552302 to 90552324 22 + TSS region transcription start site region 57667
Tssr1933 6 90552399 to 90552410 11 + TSS region transcription start site region 1933
Tssr57668 6 90552499 to 90552517 18 + TSS region transcription start site region 57668
Tssr57669 6 90553007 to 90553050 43 + TSS region transcription start site region 57669
Tssr57670 6 90559356 to 90559363 7 + TSS region transcription start site region 57670
Tssr57671 6 90559391 to 90559414 23 + TSS region transcription start site region 57671
Tssr57672 6 90565937 to 90565969 32 + TSS region transcription start site region 57672
Tssr1934 6 90570787 to 90570795 8 + TSS region transcription start site region 1934
Tssr57673 6 90570834 to 90570866 32 + TSS region transcription start site region 57673
Tssr57674 6 90571745 to 90571759 14 + TSS region transcription start site region 57674
Tssr57675 6 90571774 to 90571791 17 + TSS region transcription start site region 57675
Gm15756 6 90596697 to 90599948 3251 - antisense lncRNA gene predicted gene 15756
Tssr57676 6 90597673 to 90597689 16 + TSS region transcription start site region 57676
Tssr62022 6 90599919 to 90599962 43 - TSS region transcription start site region 62022
Tssr57677 6 90601931 to 90601938 7 + TSS region transcription start site region 57677
Tssr57678 6 90601956 to 90601965 9 + TSS region transcription start site region 57678
Tssr57679 6 90601975 to 90601987 12 + TSS region transcription start site region 57679
Tssr57680 6 90601994 to 90602003 9 + TSS region transcription start site region 57680
Tssr57681 6 90602023 to 90602030 7 + TSS region transcription start site region 57681
Gm45937 6 90602099 to 90606928 4829 - lncRNA gene predicted gene, 45937
Cpgi17724 6 90604387 to 90605289 902 CpG island CpG island 17724
Tssr57682 6 90604699 to 90604754 55 + TSS region transcription start site region 57682
Slc41a3 6 90604729 to 90646412 41683 + protein coding gene solute carrier family 41, member 3
Tssr57683 6 90604908 to 90604959 51 + TSS region transcription start site region 57683
Tssr57684 6 90604972 to 90604986 14 + TSS region transcription start site region 57684
Tssr57685 6 90609464 to 90609488 24 + TSS region transcription start site region 57685
Tssr57686 6 90618478 to 90618510 32 + TSS region transcription start site region 57686
Tssr57687 6 90619101 to 90619115 14 + TSS region transcription start site region 57687
Tssr57688 6 90619144 to 90619158 14 + TSS region transcription start site region 57688
Tssr57689 6 90619169 to 90619186 17 + TSS region transcription start site region 57689
Tssr57690 6 90619222 to 90619233 11 + TSS region transcription start site region 57690
Tssr57691 6 90619241 to 90619255 14 + TSS region transcription start site region 57691
Tssr57692 6 90619351 to 90619363 12 + TSS region transcription start site region 57692
Tssr57693 6 90619365 to 90619382 17 + TSS region transcription start site region 57693
Iqsec1 6 90659596 to 90988458 328862 - protein coding gene IQ motif and Sec7 domain 1
Tssr62023 6 90659866 to 90659872 6 - TSS region transcription start site region 62023
Tssr62024 6 90660334 to 90660336 2 - TSS region transcription start site region 62024
Tssr62025 6 90661752 to 90661770 18 - TSS region transcription start site region 62025
Tssr62026 6 90662053 to 90662064 11 - TSS region transcription start site region 62026
Tssr62027 6 90662099 to 90662119 20 - TSS region transcription start site region 62027
Tssr62028 6 90662170 to 90662220 50 - TSS region transcription start site region 62028
Tssr62029 6 90662249 to 90662270 21 - TSS region transcription start site region 62029
Tssr62030 6 90662725 to 90662763 38 - TSS region transcription start site region 62030
Tssr57694 6 90662808 to 90662829 21 + TSS region transcription start site region 57694
Tssr62031 6 90662868 to 90662885 17 - TSS region transcription start site region 62031
Tssr62032 6 90663050 to 90663061 11 - TSS region transcription start site region 62032
Tssr62033 6 90670469 to 90670495 26 - TSS region transcription start site region 62033
Gm24816 6 90681370 to 90681520 150 - miRNA gene predicted gene, 24816
Gm44123 6 90689731 to 90690829 1098 + antisense lncRNA gene predicted gene, 44123
Tssr62034 6 90689757 to 90689789 32 - TSS region transcription start site region 62034
Cpgi17725 6 90716067 to 90716750 683 CpG island CpG island 17725
Tssr62035 6 90716411 to 90716420 9 - TSS region transcription start site region 62035
Tssr62036 6 90716489 to 90716543 54 - TSS region transcription start site region 62036
Tssr62037 6 90731400 to 90731426 26 - TSS region transcription start site region 62037
Tssr62038 6 90731452 to 90731464 12 - TSS region transcription start site region 62038
Cpgi17726 6 90735638 to 90737500 1862 CpG island CpG island 17726
Tssr62039 6 90736112 to 90736151 39 - TSS region transcription start site region 62039
Tssr62040 6 90736756 to 90736777 21 - TSS region transcription start site region 62040
Tssr62041 6 90736778 to 90736817 39 - TSS region transcription start site region 62041
Tssr62042 6 90754281 to 90754292 11 - TSS region transcription start site region 62042
Tssr1935 6 90754980 to 90754997 17 - TSS region transcription start site region 1935
Tssr62043 6 90756769 to 90756780 11 - TSS region transcription start site region 62043
Tssr62044 6 90757461 to 90757472 11 - TSS region transcription start site region 62044
Tssr62045 6 90757486 to 90757534 48 - TSS region transcription start site region 62045
Tssr62046 6 90763937 to 90763951 14 - TSS region transcription start site region 62046
Cpgi17727 6 90764031 to 90764229 198 CpG island CpG island 17727
Tssr62047 6 90764297 to 90764309 12 - TSS region transcription start site region 62047
Tssr57695 6 90764423 to 90764454 31 + TSS region transcription start site region 57695
E130314K07Rik 6 90777741 to 90782080 4339 unclassified gene RIKEN cDNA E130314K07 gene
Tssr62048 6 90781282 to 90781286 4 - TSS region transcription start site region 62048
Tssr62049 6 90782024 to 90782035 11 - TSS region transcription start site region 62049
Tssr62050 6 90782037 to 90782066 29 - TSS region transcription start site region 62050
Tssr62051 6 90782510 to 90782529 19 - TSS region transcription start site region 62051
Gm44105 6 90793896 to 90794475 579 - sense intronic lncRNA gene predicted gene, 44105
Cpgi17728 6 90809961 to 90810356 395 CpG island CpG island 17728
Tssr62052 6 90810025 to 90810073 48 - TSS region transcription start site region 62052
Tssr62053 6 90810079 to 90810094 15 - TSS region transcription start site region 62053
Tssr62054 6 90810118 to 90810160 42 - TSS region transcription start site region 62054
Tssr62055 6 90810162 to 90810219 57 - TSS region transcription start site region 62055
Rpl21-ps12 6 90844981 to 90845460 479 - pseudogene ribosomal protein L21, pseudogene 12
D6Mit229 6 90846428 to 90846576 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 229
Gm25185 6 90857537 to 90857632 95 + snoRNA gene predicted gene, 25185
Tssr62056 6 90887111 to 90887114 3 - TSS region transcription start site region 62056
Tssr62057 6 90904299 to 90904307 8 - TSS region transcription start site region 62057
Tssr1936 6 90905706 to 90905718 12 + TSS region transcription start site region 1936
Ppp1r2-ps2 6 90905819 to 90906453 634 + pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 2
Tssr62058 6 90925095 to 90925098 3 - TSS region transcription start site region 62058