Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:90356724-90606927

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(6Vmn1r40-Aldh1l1)1Anl 6 89711261 to 90599171 887910 chromosomal deletion deletion, Chr 6, Argonne National Laboratory 1
Uroc1 6 90333284 to 90364551 31267 + protein coding gene urocanase domain containing 1
Tssr57640 6 90363300 to 90363317 17 + TSS region transcription start site region 57640
Tssr57641 6 90363383 to 90363392 9 + TSS region transcription start site region 57641
Tssr57642 6 90363904 to 90363920 16 + TSS region transcription start site region 57642
Tssr57643 6 90364201 to 90364205 4 + TSS region transcription start site region 57643
Cpgi17719 6 90369094 to 90370754 1660 CpG island CpG island 17719
Tssr57644 6 90369486 to 90369657 171 + TSS region transcription start site region 57644
Zxdc 6 90369492 to 90403490 33998 + protein coding gene ZXD family zinc finger C
Tssr57645 6 90384493 to 90384533 40 + TSS region transcription start site region 57645
C030015A19Rik 6 90386807 to 90389357 2550 + unclassified gene RIKEN cDNA C030015A19 gene
Cfap100 6 90403479 to 90428797 25318 - protein coding gene cilia and flagella associated protein 100
Cpgi17720 6 90428378 to 90428890 512 CpG island CpG island 17720
Tssr62021 6 90428401 to 90428455 54 - TSS region transcription start site region 62021
Tssr57646 6 90428520 to 90428565 45 + TSS region transcription start site region 57646
Gm44117 6 90459711 to 90461468 1757 - lincRNA gene predicted gene, 44117
Cpgi17721 6 90461806 to 90463843 2037 CpG island CpG island 17721
Tssr57647 6 90462562 to 90462587 25 + TSS region transcription start site region 57647
Klf15 6 90462576 to 90475238 12662 + protein coding gene Kruppel-like factor 15
Tssr57648 6 90462588 to 90462607 19 + TSS region transcription start site region 57648
Tssr57649 6 90462614 to 90462636 22 + TSS region transcription start site region 57649
Tssr57650 6 90465256 to 90465277 21 + TSS region transcription start site region 57650
Tssr57651 6 90465287 to 90465301 14 + TSS region transcription start site region 57651
Tssr57652 6 90466281 to 90466292 11 + TSS region transcription start site region 57652
Tssr57653 6 90466311 to 90466330 19 + TSS region transcription start site region 57653
Tssr57654 6 90474297 to 90474307 10 + TSS region transcription start site region 57654
Gm44421 6 90478466 to 90479686 1220 + lincRNA gene predicted gene, 44421
D6Mit130 6 90481724 to 90481927 203 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 130
Tssr57655 6 90486377 to 90486388 11 + TSS region transcription start site region 57655
Gm45901 6 90486393 to 90519480 33087 + lincRNA gene predicted gene 45901
Tssr57656 6 90486410 to 90486430 20 + TSS region transcription start site region 57656
D6Mit363 6 90486716 to 90486827 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 363
Gm44236 6 90513302 to 90513814 512 + unclassified gene predicted gene, 44236
Cpgi17722 6 90538044 to 90538230 186 CpG island CpG island 17722
Tssr57657 6 90540752 to 90540781 29 + TSS region transcription start site region 57657
Tssr57658 6 90540786 to 90540834 48 + TSS region transcription start site region 57658
Cpgi17723 6 90550389 to 90550551 162 CpG island CpG island 17723
Tssr57659 6 90550529 to 90550570 41 + TSS region transcription start site region 57659
Tssr57660 6 90550753 to 90550764 11 + TSS region transcription start site region 57660
Tssr57661 6 90550789 to 90550849 60 + TSS region transcription start site region 57661
Aldh1l1 6 90550793 to 90599171 48378 + protein coding gene aldehyde dehydrogenase 1 family, member L1
Tssr57662 6 90550863 to 90550871 8 + TSS region transcription start site region 57662
Tssr57663 6 90552151 to 90552165 14 + TSS region transcription start site region 57663
Tssr57664 6 90552183 to 90552194 11 + TSS region transcription start site region 57664
Tssr57665 6 90552204 to 90552206 2 + TSS region transcription start site region 57665
Tssr57666 6 90552249 to 90552262 13 + TSS region transcription start site region 57666
Tssr57667 6 90552302 to 90552324 22 + TSS region transcription start site region 57667
Tssr1933 6 90552399 to 90552410 11 + TSS region transcription start site region 1933
Tssr57668 6 90552499 to 90552517 18 + TSS region transcription start site region 57668
Tssr57669 6 90553007 to 90553050 43 + TSS region transcription start site region 57669
Tssr57670 6 90559356 to 90559363 7 + TSS region transcription start site region 57670
Tssr57671 6 90559391 to 90559414 23 + TSS region transcription start site region 57671
Tssr57672 6 90565937 to 90565969 32 + TSS region transcription start site region 57672
Tssr1934 6 90570787 to 90570795 8 + TSS region transcription start site region 1934
Tssr57673 6 90570834 to 90570866 32 + TSS region transcription start site region 57673
Tssr57674 6 90571745 to 90571759 14 + TSS region transcription start site region 57674
Tssr57675 6 90571774 to 90571791 17 + TSS region transcription start site region 57675
Gm15756 6 90596697 to 90599948 3251 - antisense lncRNA gene predicted gene 15756
Tssr57676 6 90597673 to 90597689 16 + TSS region transcription start site region 57676
Tssr62022 6 90599919 to 90599962 43 - TSS region transcription start site region 62022
Tssr57677 6 90601931 to 90601938 7 + TSS region transcription start site region 57677
Tssr57678 6 90601956 to 90601965 9 + TSS region transcription start site region 57678
Tssr57679 6 90601975 to 90601987 12 + TSS region transcription start site region 57679
Tssr57680 6 90601994 to 90602003 9 + TSS region transcription start site region 57680
Tssr57681 6 90602023 to 90602030 7 + TSS region transcription start site region 57681
Gm45937 6 90602099 to 90606928 4829 - lncRNA gene predicted gene, 45937
Cpgi17724 6 90604387 to 90605289 902 CpG island CpG island 17724
Tssr57682 6 90604699 to 90604754 55 + TSS region transcription start site region 57682
Slc41a3 6 90604729 to 90646412 41683 + protein coding gene solute carrier family 41, member 3
Tssr57683 6 90604908 to 90604959 51 + TSS region transcription start site region 57683
Tssr57684 6 90604972 to 90604986 14 + TSS region transcription start site region 57684