Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:89120008-90490944

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr57617 6 89140992 to 89141014 22 + TSS region transcription start site region 57617
Gm1965 6 89140994 to 89147370 6376 + lincRNA gene predicted gene 1965
Gm6507 6 89184672 to 89186025 1353 - lincRNA gene predicted gene 6507
Gm44203 6 89201253 to 89201559 306 + pseudogene predicted gene, 44203
Gm839 6 89212197 to 89216179 3982 - lincRNA gene predicted gene 839
Cpgi17712 6 89235681 to 89236074 393 CpG island CpG island 17712
Gm25961 6 89249468 to 89249602 134 - rRNA gene predicted gene, 25961
Tssr57618 6 89254392 to 89254396 4 + TSS region transcription start site region 57618
Gm44204 6 89257820 to 89259136 1316 - lincRNA gene predicted gene, 44204
Tssr62001 6 89258246 to 89258277 31 - TSS region transcription start site region 62001
4930512J16Rik 6 89269511 to 89285725 16214 - lincRNA gene RIKEN cDNA 4930512J16 gene
Tssr62002 6 89273206 to 89273248 42 - TSS region transcription start site region 62002
Gm36735 6 89273296 to 89276330 3034 + lncRNA gene predicted gene, 36735
Tssr57619 6 89294891 to 89294905 14 + TSS region transcription start site region 57619
Tssr57620 6 89294939 to 89294955 16 + TSS region transcription start site region 57620
Gm26811 6 89304630 to 89327621 22991 + antisense lncRNA gene predicted gene, 26811
Plxna1 6 89316313 to 89362613 46300 - protein coding gene plexin A1
Tssr62003 6 89316683 to 89316687 4 - TSS region transcription start site region 62003
Tssr62004 6 89316749 to 89316766 17 - TSS region transcription start site region 62004
Tssr62005 6 89317972 to 89317986 14 - TSS region transcription start site region 62005
Gm44207 6 89345140 to 89346563 1423 + unclassified gene predicted gene, 44207
Tssr62006 6 89348580 to 89348604 24 - TSS region transcription start site region 62006
Tssr62007 6 89357709 to 89357721 12 - TSS region transcription start site region 62007
Cpgi17713 6 89361257 to 89363385 2128 CpG island CpG island 17713
Gm40415 6 89361355 to 89362396 1041 + protein coding gene predicted gene, 40415
Tssr62008 6 89362553 to 89362574 21 - TSS region transcription start site region 62008
Tssr62009 6 89362581 to 89362637 56 - TSS region transcription start site region 62009
Tssr62010 6 89363579 to 89363593 14 - TSS region transcription start site region 62010
Tssr62011 6 89364384 to 89364418 34 - TSS region transcription start site region 62011
Tssr62012 6 89364495 to 89364509 14 - TSS region transcription start site region 62012
Tssr57621 6 89364616 to 89364648 32 + TSS region transcription start site region 57621
Chchd6 6 89383146 to 89595652 212506 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 6
Tssr57622 6 89392101 to 89392140 39 + TSS region transcription start site region 57622
Tssr57623 6 89413907 to 89413918 11 + TSS region transcription start site region 57623
Tssr62013 6 89415911 to 89415928 17 - TSS region transcription start site region 62013
Tssr57624 6 89422241 to 89422254 13 + TSS region transcription start site region 57624
Gm46966 6 89452863 to 89467380 14517 + lncRNA gene predicted gene, 46966
Gm43903 6 89526839 to 89527455 616 - unclassified gene predicted gene, 43903
Tssr62014 6 89535055 to 89535070 15 - TSS region transcription start site region 62014
Cpgi17714 6 89595070 to 89595805 735 CpG island CpG island 17714
Tssr62015 6 89595547 to 89595645 98 - TSS region transcription start site region 62015
Tssr62016 6 89595647 to 89595658 11 - TSS region transcription start site region 62016
Gm19896 6 89599298 to 89599666 368 - pseudogene predicted gene, 19896
D6Mit325 6 89617939 to 89618109 170 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 325
Cpgi17715 6 89643727 to 89644740 1013 CpG island CpG island 17715
Tssr57625 6 89643982 to 89644007 25 + TSS region transcription start site region 57625
Txnrd3 6 89643988 to 89675529 31541 + protein coding gene thioredoxin reductase 3
Tssr57626 6 89644015 to 89644062 47 + TSS region transcription start site region 57626
Tssr57627 6 89644065 to 89644074 9 + TSS region transcription start site region 57627
Vmn1r-ps25 6 89698719 to 89699517 798 - pseudogene vomeronasal 1 receptor, pseudogene 25
Del(6Vmn1r40-Aldh1l1)1Anl 6 89711261 to 90599171 887910 chromosomal deletion deletion, Chr 6, Argonne National Laboratory 1
Vmn1r40 6 89711261 to 89715135 3874 + protein coding gene vomeronasal 1 receptor 40
Vmn1r41 6 89740888 to 89747414 6526 + protein coding gene vomeronasal 1 receptor 41
Vmn1r-ps26 6 89789449 to 89790288 839 + pseudogene vomeronasal 1 receptor, pseudogene 26
Vmn1r-ps27 6 89805008 to 89805944 936 - pseudogene vomeronasal 1 receptor, pseudogene 27
Vmn1r42 6 89844518 to 89845615 1097 - protein coding gene vomeronasal 1 receptor 42
Tssr62017 6 89867300 to 89867307 7 - TSS region transcription start site region 62017
Vmn1r43 6 89869461 to 89870529 1068 - protein coding gene vomeronasal 1 receptor 43
Vmn1r44 6 89892161 to 89894206 2045 + protein coding gene vomeronasal 1 receptor 44
Vmn1r-ps28 6 89907677 to 89908618 941 + pseudogene vomeronasal 1 receptor, pseudogene 28
Vmn1r45 6 89931650 to 89940507 8857 - protein coding gene vomeronasal 1 receptor 45
Vmn1r46 6 89969304 to 89977100 7796 + protein coding gene vomeronasal 1 receptor 46
Vmn1r-ps29 6 89997612 to 90004589 6977 + pseudogene vomeronasal 1 receptor, pseudogene 29
Vmn1r47 6 90021888 to 90022820 932 + protein coding gene vomeronasal 1 receptor 47
Vmn1r48 6 90035933 to 90036841 908 - protein coding gene vomeronasal 1 receptor 48
Vmn1r-ps31 6 90056409 to 90056646 237 - pseudogene vomeronasal 1 receptor, pseudogene 31
Gm20534 6 90056626 to 90056797 171 + pseudogene predicted gene 20534
Vmn1r49 6 90072086 to 90078374 6288 - protein coding gene vomeronasal 1, receptor 49
Vmn1r50 6 90107275 to 90108207 932 + protein coding gene vomeronasal 1 receptor 50
Vmn1r51 6 90122643 to 90130645 8002 + protein coding gene vomeronasal 1 receptor 51
Gm20426 6 90131441 to 90232817 101376 - pseudogene predicted gene 20426
Vmn1r-ps32 6 90153047 to 90154002 955 + pseudogene vomeronasal 1 receptor, pseudogene 32
D6Mit227 6 90176944 to 90177074 130 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 227
Vmn1r52 6 90178716 to 90179645 929 + protein coding gene vomeronasal 1 receptor 52
V1ra8 6 90202817 to 90203656 839 + protein coding gene vomeronasal 1 receptor, A8
Vmn1r53 6 90223317 to 90224438 1121 - protein coding gene vomeronasal 1 receptor 53
Cpgi17716 6 90232720 to 90232876 156 CpG island CpG island 17716
Tssr62018 6 90232805 to 90232846 41 - TSS region transcription start site region 62018
Gm4287 6 90235686 to 90236267 581 + pseudogene predicted gene 4287
Vmn1r-ps34 6 90242318 to 90243243 925 + pseudogene vomeronasal 1 receptor, pseudogene 34
Vmn1r54 6 90269106 to 90270053 947 + protein coding gene vomeronasal 1 receptor 54
Gm43891 6 90296222 to 90299333 3111 + unclassified gene predicted gene, 43891
Tssr57628 6 90301213 to 90301220 7 + TSS region transcription start site region 57628
Tssr57629 6 90301231 to 90301236 5 + TSS region transcription start site region 57629
Tssr57630 6 90301241 to 90301294 53 + TSS region transcription start site region 57630
BC048671 6 90301270 to 90305449 4179 + protein coding gene cDNA sequence BC048671
Tssr57631 6 90302066 to 90302081 15 + TSS region transcription start site region 57631
Tssr57632 6 90302083 to 90302140 57 + TSS region transcription start site region 57632
Tssr57633 6 90302142 to 90302150 8 + TSS region transcription start site region 57633
Tssr57634 6 90302159 to 90302168 9 + TSS region transcription start site region 57634
Tssr57635 6 90302513 to 90302516 3 + TSS region transcription start site region 57635
Tssr57636 6 90302527 to 90302535 8 + TSS region transcription start site region 57636
Tssr57637 6 90302540 to 90302561 21 + TSS region transcription start site region 57637
Chst13 6 90308351 to 90325185 16834 - protein coding gene carbohydrate sulfotransferase 13
Cpgi17717 6 90308816 to 90310181 1365 CpG island CpG island 17717
Tssr62019 6 90318842 to 90318848 6 - TSS region transcription start site region 62019
Tssr57638 6 90320767 to 90320771 4 + TSS region transcription start site region 57638
Cpgi17718 6 90324884 to 90325375 491 CpG island CpG island 17718
Tssr1932 6 90325177 to 90325203 26 - TSS region transcription start site region 1932
Tssr62020 6 90325214 to 90325227 13 - TSS region transcription start site region 62020
Tssr57639 6 90333270 to 90333306 36 + TSS region transcription start site region 57639
Uroc1 6 90333284 to 90364551 31267 + protein coding gene urocanase domain containing 1
D6Mit131 6 90353901 to 90354039 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 131
Tssr57640 6 90363300 to 90363317 17 + TSS region transcription start site region 57640
Tssr57641 6 90363383 to 90363392 9 + TSS region transcription start site region 57641
Tssr57642 6 90363904 to 90363920 16 + TSS region transcription start site region 57642
Tssr57643 6 90364201 to 90364205 4 + TSS region transcription start site region 57643
Cpgi17719 6 90369094 to 90370754 1660 CpG island CpG island 17719
Tssr57644 6 90369486 to 90369657 171 + TSS region transcription start site region 57644
Zxdc 6 90369492 to 90403490 33998 + protein coding gene ZXD family zinc finger C
Tssr57645 6 90384493 to 90384533 40 + TSS region transcription start site region 57645
C030015A19Rik 6 90386807 to 90389357 2550 + unclassified gene RIKEN cDNA C030015A19 gene
Cfap100 6 90403479 to 90428797 25318 - protein coding gene cilia and flagella associated protein 100
Cpgi17720 6 90428378 to 90428890 512 CpG island CpG island 17720
Tssr62021 6 90428401 to 90428455 54 - TSS region transcription start site region 62021
Tssr57646 6 90428520 to 90428565 45 + TSS region transcription start site region 57646
Gm44117 6 90459711 to 90461468 1757 - lincRNA gene predicted gene, 44117
Cpgi17721 6 90461806 to 90463843 2037 CpG island CpG island 17721
Tssr57647 6 90462562 to 90462587 25 + TSS region transcription start site region 57647
Klf15 6 90462576 to 90475238 12662 + protein coding gene Kruppel-like factor 15
Tssr57648 6 90462588 to 90462607 19 + TSS region transcription start site region 57648
Tssr57649 6 90462614 to 90462636 22 + TSS region transcription start site region 57649
Tssr57650 6 90465256 to 90465277 21 + TSS region transcription start site region 57650
Tssr57651 6 90465287 to 90465301 14 + TSS region transcription start site region 57651
Tssr57652 6 90466281 to 90466292 11 + TSS region transcription start site region 57652
Tssr57653 6 90466311 to 90466330 19 + TSS region transcription start site region 57653
Tssr57654 6 90474297 to 90474307 10 + TSS region transcription start site region 57654
Gm44421 6 90478466 to 90479686 1220 + lincRNA gene predicted gene, 44421
D6Mit130 6 90481724 to 90481927 203 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 130
Tssr57655 6 90486377 to 90486388 11 + TSS region transcription start site region 57655
Gm45901 6 90486393 to 90519480 33087 + lincRNA gene predicted gene 45901
Tssr57656 6 90486410 to 90486430 20 + TSS region transcription start site region 57656
D6Mit363 6 90486716 to 90486827 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 363