Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:88896154-89296163

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcm2 6 88883474 to 88898780 15306 - protein coding gene minichromosome maintenance complex component 2
Tssr61996 6 88897380 to 88897397 17 - TSS region transcription start site region 61996
Cpgi17710 6 88898351 to 88898963 612 CpG island CpG island 17710
Tssr61997 6 88898664 to 88898713 49 - TSS region transcription start site region 61997
Cpgi17711 6 88901887 to 88902962 1075 CpG island CpG island 17711
Tpra1 6 88902251 to 88912238 9987 + protein coding gene transmembrane protein, adipocyte asscociated 1
Tssr57607 6 88902293 to 88902351 58 + TSS region transcription start site region 57607
Tssr57608 6 88902386 to 88902414 28 + TSS region transcription start site region 57608
Tssr57609 6 88902415 to 88902428 13 + TSS region transcription start site region 57609
Tssr57610 6 88902454 to 88902535 81 + TSS region transcription start site region 57610
Tssr57611 6 88902545 to 88902559 14 + TSS region transcription start site region 57611
Tssr61998 6 88902748 to 88902768 20 - TSS region transcription start site region 61998
Tssr61999 6 88903891 to 88903930 39 - TSS region transcription start site region 61999
Gm36268 6 88914789 to 88917100 2311 - lncRNA gene predicted gene, 36268
Gm44178 6 88919708 to 88922637 2929 + unclassified gene predicted gene, 44178
Gm36354 6 88939921 to 88946480 6559 + lncRNA gene predicted gene, 36354
Tssr57612 6 88944565 to 88944574 9 + TSS region transcription start site region 57612
Gm36409 6 88964652 to 88973887 9235 - lncRNA gene predicted gene, 36409
Fcsa1 6 88981024 to 88981170 146 QTL femoral cross-sectional area 1
D6Mit263 6 88981024 to 88981170 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 263
Pas1c 6 88981024 to 88981170 146 QTL pulmonary adenoma susceptibility 1c
Gm36505 6 88997977 to 89000462 2485 + lncRNA gene predicted gene, 36505
Tssr57613 6 89000609 to 89000626 17 + TSS region transcription start site region 57613
Tssr62000 6 89004167 to 89004170 3 - TSS region transcription start site region 62000
Gm36639 6 89023837 to 89025913 2076 + lncRNA gene predicted gene, 36639
D6Mit248 6 89043668 to 89043800 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 248
Tssr57614 6 89096103 to 89096115 12 + TSS region transcription start site region 57614
4933427D06Rik 6 89096110 to 89110039 13929 + lincRNA gene RIKEN cDNA 4933427D06 gene
Tssr57615 6 89096154 to 89096163 9 + TSS region transcription start site region 57615
Tssr57616 6 89096173 to 89096178 5 + TSS region transcription start site region 57616
Tssr57617 6 89140992 to 89141014 22 + TSS region transcription start site region 57617
Gm1965 6 89140994 to 89147370 6376 + lincRNA gene predicted gene 1965
Gm6507 6 89184672 to 89186025 1353 - lincRNA gene predicted gene 6507
Gm44203 6 89201253 to 89201559 306 + pseudogene predicted gene, 44203
Gm839 6 89212197 to 89216179 3982 - lincRNA gene predicted gene 839
Cpgi17712 6 89235681 to 89236074 393 CpG island CpG island 17712
Gm25961 6 89249468 to 89249602 134 - rRNA gene predicted gene, 25961
Tssr57618 6 89254392 to 89254396 4 + TSS region transcription start site region 57618
Gm44204 6 89257820 to 89259136 1316 - lincRNA gene predicted gene, 44204
Tssr62001 6 89258246 to 89258277 31 - TSS region transcription start site region 62001
4930512J16Rik 6 89269511 to 89285725 16214 - lincRNA gene RIKEN cDNA 4930512J16 gene
Tssr62002 6 89273206 to 89273248 42 - TSS region transcription start site region 62002
Gm36735 6 89273296 to 89276330 3034 + lncRNA gene predicted gene, 36735
Tssr57619 6 89294891 to 89294905 14 + TSS region transcription start site region 57619
Tssr57620 6 89294939 to 89294955 16 + TSS region transcription start site region 57620