Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:88872972-89762986

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Podxl2 6 88842558 to 88875044 32486 - protein coding gene podocalyxin-like 2
Cpgi17709 6 88873896 to 88875554 1658 CpG island CpG island 17709
Tssr61992 6 88874049 to 88874070 21 - TSS region transcription start site region 61992
Tssr61993 6 88874758 to 88874784 26 - TSS region transcription start site region 61993
Tssr61994 6 88874984 to 88875030 46 - TSS region transcription start site region 61994
Tssr61995 6 88875035 to 88875053 18 - TSS region transcription start site region 61995
D6Mit364 6 88880212 to 88880291 79 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 364
Gm36189 6 88882655 to 88883177 522 + pseudogene predicted gene, 36189
Mcm2 6 88883474 to 88898780 15306 - protein coding gene minichromosome maintenance complex component 2
Tssr61996 6 88897380 to 88897397 17 - TSS region transcription start site region 61996
Cpgi17710 6 88898351 to 88898963 612 CpG island CpG island 17710
Tssr61997 6 88898664 to 88898713 49 - TSS region transcription start site region 61997
Cpgi17711 6 88901887 to 88902962 1075 CpG island CpG island 17711
Tpra1 6 88902251 to 88912238 9987 + protein coding gene transmembrane protein, adipocyte asscociated 1
Tssr57607 6 88902293 to 88902351 58 + TSS region transcription start site region 57607
Tssr57608 6 88902386 to 88902414 28 + TSS region transcription start site region 57608
Tssr57609 6 88902415 to 88902428 13 + TSS region transcription start site region 57609
Tssr57610 6 88902454 to 88902535 81 + TSS region transcription start site region 57610
Tssr57611 6 88902545 to 88902559 14 + TSS region transcription start site region 57611
Tssr61998 6 88902748 to 88902768 20 - TSS region transcription start site region 61998
Tssr61999 6 88903891 to 88903930 39 - TSS region transcription start site region 61999
Gm36268 6 88914789 to 88917100 2311 - lncRNA gene predicted gene, 36268
Gm44178 6 88919708 to 88922637 2929 + unclassified gene predicted gene, 44178
Gm36354 6 88939921 to 88946480 6559 + lncRNA gene predicted gene, 36354
Tssr57612 6 88944565 to 88944574 9 + TSS region transcription start site region 57612
Gm36409 6 88964652 to 88973887 9235 - lncRNA gene predicted gene, 36409
D6Mit263 6 88981024 to 88981170 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 263
Fcsa1 6 88981024 to 88981170 146 QTL femoral cross-sectional area 1
Pas1c 6 88981024 to 88981170 146 QTL pulmonary adenoma susceptibility 1c
Gm36505 6 88997977 to 89000462 2485 + lncRNA gene predicted gene, 36505
Tssr57613 6 89000609 to 89000626 17 + TSS region transcription start site region 57613
Tssr62000 6 89004167 to 89004170 3 - TSS region transcription start site region 62000
Gm36639 6 89023837 to 89025913 2076 + lncRNA gene predicted gene, 36639
D6Mit248 6 89043668 to 89043800 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 248
Tssr57614 6 89096103 to 89096115 12 + TSS region transcription start site region 57614
4933427D06Rik 6 89096110 to 89110039 13929 + lincRNA gene RIKEN cDNA 4933427D06 gene
Tssr57615 6 89096154 to 89096163 9 + TSS region transcription start site region 57615
Tssr57616 6 89096173 to 89096178 5 + TSS region transcription start site region 57616
Tssr57617 6 89140992 to 89141014 22 + TSS region transcription start site region 57617
Gm1965 6 89140994 to 89147370 6376 + lincRNA gene predicted gene 1965
Gm6507 6 89184672 to 89186025 1353 - lincRNA gene predicted gene 6507
Gm44203 6 89201253 to 89201559 306 + pseudogene predicted gene, 44203
Gm839 6 89212197 to 89216179 3982 - lincRNA gene predicted gene 839
Cpgi17712 6 89235681 to 89236074 393 CpG island CpG island 17712
Gm25961 6 89249468 to 89249602 134 - rRNA gene predicted gene, 25961
Tssr57618 6 89254392 to 89254396 4 + TSS region transcription start site region 57618
Gm44204 6 89257820 to 89259136 1316 - lincRNA gene predicted gene, 44204
Tssr62001 6 89258246 to 89258277 31 - TSS region transcription start site region 62001
4930512J16Rik 6 89269511 to 89285725 16214 - lincRNA gene RIKEN cDNA 4930512J16 gene
Tssr62002 6 89273206 to 89273248 42 - TSS region transcription start site region 62002
Gm36735 6 89273296 to 89276330 3034 + lncRNA gene predicted gene, 36735
Tssr57619 6 89294891 to 89294905 14 + TSS region transcription start site region 57619
Tssr57620 6 89294939 to 89294955 16 + TSS region transcription start site region 57620
Gm26811 6 89304630 to 89327621 22991 + antisense lncRNA gene predicted gene, 26811
Plxna1 6 89316313 to 89362613 46300 - protein coding gene plexin A1
Tssr62003 6 89316683 to 89316687 4 - TSS region transcription start site region 62003
Tssr62004 6 89316749 to 89316766 17 - TSS region transcription start site region 62004
Tssr62005 6 89317972 to 89317986 14 - TSS region transcription start site region 62005
Gm44207 6 89345140 to 89346563 1423 + unclassified gene predicted gene, 44207
Tssr62006 6 89348580 to 89348604 24 - TSS region transcription start site region 62006
Tssr62007 6 89357709 to 89357721 12 - TSS region transcription start site region 62007
Cpgi17713 6 89361257 to 89363385 2128 CpG island CpG island 17713
Gm40415 6 89361355 to 89362396 1041 + protein coding gene predicted gene, 40415
Tssr62008 6 89362553 to 89362574 21 - TSS region transcription start site region 62008
Tssr62009 6 89362581 to 89362637 56 - TSS region transcription start site region 62009
Tssr62010 6 89363579 to 89363593 14 - TSS region transcription start site region 62010
Tssr62011 6 89364384 to 89364418 34 - TSS region transcription start site region 62011
Tssr62012 6 89364495 to 89364509 14 - TSS region transcription start site region 62012
Tssr57621 6 89364616 to 89364648 32 + TSS region transcription start site region 57621
Chchd6 6 89383146 to 89595652 212506 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 6
Tssr57622 6 89392101 to 89392140 39 + TSS region transcription start site region 57622
Tssr57623 6 89413907 to 89413918 11 + TSS region transcription start site region 57623
Tssr62013 6 89415911 to 89415928 17 - TSS region transcription start site region 62013
Tssr57624 6 89422241 to 89422254 13 + TSS region transcription start site region 57624
Gm46966 6 89452863 to 89467380 14517 + lncRNA gene predicted gene, 46966
Gm43903 6 89526839 to 89527455 616 - unclassified gene predicted gene, 43903
Tssr62014 6 89535055 to 89535070 15 - TSS region transcription start site region 62014
Cpgi17714 6 89595070 to 89595805 735 CpG island CpG island 17714
Tssr62015 6 89595547 to 89595645 98 - TSS region transcription start site region 62015
Tssr62016 6 89595647 to 89595658 11 - TSS region transcription start site region 62016
Gm19896 6 89599298 to 89599666 368 - pseudogene predicted gene, 19896
D6Mit325 6 89617939 to 89618109 170 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 325
Cpgi17715 6 89643727 to 89644740 1013 CpG island CpG island 17715
Tssr57625 6 89643982 to 89644007 25 + TSS region transcription start site region 57625
Txnrd3 6 89643988 to 89675529 31541 + protein coding gene thioredoxin reductase 3
Tssr57626 6 89644015 to 89644062 47 + TSS region transcription start site region 57626
Tssr57627 6 89644065 to 89644074 9 + TSS region transcription start site region 57627
Vmn1r-ps25 6 89698719 to 89699517 798 - pseudogene vomeronasal 1 receptor, pseudogene 25
Del(6Vmn1r40-Aldh1l1)1Anl 6 89711261 to 90599171 887910 chromosomal deletion deletion, Chr 6, Argonne National Laboratory 1
Vmn1r40 6 89711261 to 89715135 3874 + protein coding gene vomeronasal 1 receptor 40
Vmn1r41 6 89740888 to 89747414 6526 + protein coding gene vomeronasal 1 receptor 41