Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:88838668-89248800

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abtb1 6 88835914 to 88841984 6070 - protein coding gene ankyrin repeat and BTB (POZ) domain containing 1
Cpgi17707 6 88839263 to 88839635 372 CpG island CpG island 17707
Cpgi17708 6 88841321 to 88843290 1969 CpG island CpG island 17708
Tssr61989 6 88841828 to 88841844 16 - TSS region transcription start site region 61989
Tssr61990 6 88841851 to 88841905 54 - TSS region transcription start site region 61990
Tssr61991 6 88841936 to 88841943 7 - TSS region transcription start site region 61991
Podxl2 6 88842558 to 88875044 32486 - protein coding gene podocalyxin-like 2
Gm15612 6 88842854 to 88847274 4420 + antisense lncRNA gene predicted gene 15612
Cpgi17709 6 88873896 to 88875554 1658 CpG island CpG island 17709
Tssr61992 6 88874049 to 88874070 21 - TSS region transcription start site region 61992
Tssr61993 6 88874758 to 88874784 26 - TSS region transcription start site region 61993
Tssr61994 6 88874984 to 88875030 46 - TSS region transcription start site region 61994
Tssr61995 6 88875035 to 88875053 18 - TSS region transcription start site region 61995
D6Mit364 6 88880212 to 88880291 79 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 364
Gm36189 6 88882655 to 88883177 522 + pseudogene predicted gene, 36189
Mcm2 6 88883474 to 88898780 15306 - protein coding gene minichromosome maintenance complex component 2
Tssr61996 6 88897380 to 88897397 17 - TSS region transcription start site region 61996
Cpgi17710 6 88898351 to 88898963 612 CpG island CpG island 17710
Tssr61997 6 88898664 to 88898713 49 - TSS region transcription start site region 61997
Cpgi17711 6 88901887 to 88902962 1075 CpG island CpG island 17711
Tpra1 6 88902251 to 88912238 9987 + protein coding gene transmembrane protein, adipocyte asscociated 1
Tssr57607 6 88902293 to 88902351 58 + TSS region transcription start site region 57607
Tssr57608 6 88902386 to 88902414 28 + TSS region transcription start site region 57608
Tssr57609 6 88902415 to 88902428 13 + TSS region transcription start site region 57609
Tssr57610 6 88902454 to 88902535 81 + TSS region transcription start site region 57610
Tssr57611 6 88902545 to 88902559 14 + TSS region transcription start site region 57611
Tssr61998 6 88902748 to 88902768 20 - TSS region transcription start site region 61998
Tssr61999 6 88903891 to 88903930 39 - TSS region transcription start site region 61999
Gm36268 6 88914789 to 88917100 2311 - lncRNA gene predicted gene, 36268
Gm44178 6 88919708 to 88922637 2929 + unclassified gene predicted gene, 44178
Gm36354 6 88939921 to 88946480 6559 + lncRNA gene predicted gene, 36354
Tssr57612 6 88944565 to 88944574 9 + TSS region transcription start site region 57612
Gm36409 6 88964652 to 88973887 9235 - lncRNA gene predicted gene, 36409
Pas1c 6 88981024 to 88981170 146 QTL pulmonary adenoma susceptibility 1c
D6Mit263 6 88981024 to 88981170 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 263
Fcsa1 6 88981024 to 88981170 146 QTL femoral cross-sectional area 1
Gm36505 6 88997977 to 89000462 2485 + lncRNA gene predicted gene, 36505
Tssr57613 6 89000609 to 89000626 17 + TSS region transcription start site region 57613
Tssr62000 6 89004167 to 89004170 3 - TSS region transcription start site region 62000
Gm36639 6 89023837 to 89025913 2076 + lncRNA gene predicted gene, 36639
D6Mit248 6 89043668 to 89043800 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 248
Tssr57614 6 89096103 to 89096115 12 + TSS region transcription start site region 57614
4933427D06Rik 6 89096110 to 89110039 13929 + lincRNA gene RIKEN cDNA 4933427D06 gene
Tssr57615 6 89096154 to 89096163 9 + TSS region transcription start site region 57615
Tssr57616 6 89096173 to 89096178 5 + TSS region transcription start site region 57616
Tssr57617 6 89140992 to 89141014 22 + TSS region transcription start site region 57617
Gm1965 6 89140994 to 89147370 6376 + lincRNA gene predicted gene 1965
Gm6507 6 89184672 to 89186025 1353 - lincRNA gene predicted gene 6507
Gm44203 6 89201253 to 89201559 306 + pseudogene predicted gene, 44203
Gm839 6 89212197 to 89216179 3982 - lincRNA gene predicted gene 839
Cpgi17712 6 89235681 to 89236074 393 CpG island CpG island 17712