Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:88200977-88611301

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gata2 6 88193891 to 88207032 13141 + protein coding gene GATA binding protein 2
Tssr57583 6 88204440 to 88204449 9 + TSS region transcription start site region 57583
Cpgi17696 6 88204454 to 88204874 420 CpG island CpG island 17696
Tssr57584 6 88205857 to 88205880 23 + TSS region transcription start site region 57584
Gm44388 6 88216245 to 88216502 257 - unclassified gene predicted gene, 44388
Tssr57585 6 88220785 to 88220796 11 + TSS region transcription start site region 57585
Dnajb8 6 88222268 to 88223256 988 + protein coding gene DnaJ heat shock protein family (Hsp40) member B8
Tssr57586 6 88222279 to 88222295 16 + TSS region transcription start site region 57586
1700031F10Rik 6 88222602 to 88225678 3076 - antisense lncRNA gene RIKEN cDNA 1700031F10 gene
Tssr61974 6 88225676 to 88225688 12 - TSS region transcription start site region 61974
Cpgi17697 6 88235911 to 88236369 458 CpG island CpG island 17697
Cpgi17698 6 88242697 to 88242916 219 CpG island CpG island 17698
Eefsec 6 88257334 to 88446539 189205 - protein coding gene eukaryotic elongation factor, selenocysteine-tRNA-specific
Tssr61975 6 88268835 to 88268844 9 - TSS region transcription start site region 61975
Tssr57587 6 88272374 to 88272379 5 + TSS region transcription start site region 57587
Tssr57588 6 88272385 to 88272391 6 + TSS region transcription start site region 57588
Tssr57589 6 88272400 to 88272407 7 + TSS region transcription start site region 57589
Gm44265 6 88353142 to 88353606 464 - sense intronic lncRNA gene predicted gene, 44265
Tssr61976 6 88373915 to 88373919 4 - TSS region transcription start site region 61976
Gm25178 6 88405977 to 88406301 324 + unclassified non-coding RNA gene predicted gene, 25178
Gm44264 6 88445687 to 88446513 826 + antisense lncRNA gene predicted gene, 44264
Cpgi17699 6 88445921 to 88446857 936 CpG island CpG island 17699
Tssr61977 6 88446491 to 88446539 48 - TSS region transcription start site region 61977
Cpgi17700 6 88465254 to 88465937 683 CpG island CpG island 17700
Tssr61978 6 88465264 to 88465304 40 - TSS region transcription start site region 61978
Tssr57590 6 88465417 to 88465482 65 + TSS region transcription start site region 57590
Ruvbl1 6 88465423 to 88497566 32143 + protein coding gene RuvB-like protein 1
Tssr57591 6 88465483 to 88465495 12 + TSS region transcription start site region 57591
D6Mit226 6 88474359 to 88474505 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 226
Gm46965 6 88491625 to 88496401 4776 + protein coding gene predicted gene, 46965
Cpgi17701 6 88499385 to 88500656 1271 CpG island CpG island 17701
Gm44170 6 88503605 to 88504277 672 + antisense lncRNA gene predicted gene, 44170
Sec61a1 6 88503607 to 88518800 15193 - protein coding gene Sec61 alpha 1 subunit (S. cerevisiae)
Tssr61979 6 88504980 to 88504984 4 - TSS region transcription start site region 61979
Tssr61980 6 88508613 to 88508647 34 - TSS region transcription start site region 61980
Tssr61981 6 88515408 to 88515426 18 - TSS region transcription start site region 61981
Cpgi17702 6 88518161 to 88519491 1330 CpG island CpG island 17702
Tssr61982 6 88518735 to 88518757 22 - TSS region transcription start site region 61982
Tssr61983 6 88518760 to 88518880 120 - TSS region transcription start site region 61983
Gm44430 6 88519013 to 88520007 994 + unclassified gene predicted gene, 44430
Kbtbd12 6 88547722 to 88627448 79726 - protein coding gene kelch repeat and BTB (POZ) domain containing 12
D6Mit261.1 6 88574968 to 88575090 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 261.1
D6Mit261 6 88575060 to 88575178 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 261
Stheal5 6 88575060 to 88575178 118 QTL soft tissue heal 5
Tssr57592 6 88575988 to 88575989 1 + TSS region transcription start site region 57592
Tssr1929 6 88578311 to 88578312 1 + TSS region transcription start site region 1929
Tssr61984 6 88601303 to 88601308 5 - TSS region transcription start site region 61984