Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:88090579-88310593

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpn1 6 88084482 to 88105304 20822 + protein coding gene ribophorin I
Tssr57569 6 88093921 to 88093946 25 + TSS region transcription start site region 57569
Tssr57570 6 88095649 to 88095663 14 + TSS region transcription start site region 57570
Mir6376 6 88104128 to 88104258 130 - miRNA gene microRNA 6376
Cpgi17690 6 88105935 to 88106456 521 CpG island CpG island 17690
D6Mit40 6 88122406 to 88122657 251 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 40
Gm38856 6 88151561 to 88154996 3435 + lncRNA gene predicted gene, 38856
Tssr57571 6 88152375 to 88152390 15 + TSS region transcription start site region 57571
Tssr61972 6 88161044 to 88161053 9 - TSS region transcription start site region 61972
Tssr61973 6 88166161 to 88166172 11 - TSS region transcription start site region 61973
Gm38708 6 88188397 to 88190681 2284 - lincRNA gene predicted gene, 38708
Cpgi17691 6 88189316 to 88190823 1507 CpG island CpG island 17691
Tssr57572 6 88189900 to 88189907 7 + TSS region transcription start site region 57572
Cpgi17692 6 88193423 to 88194920 1497 CpG island CpG island 17692
Tssr57573 6 88193576 to 88193596 20 + TSS region transcription start site region 57573
Tssr57574 6 88193717 to 88193723 6 + TSS region transcription start site region 57574
Gata2 6 88193891 to 88207032 13141 + protein coding gene GATA binding protein 2
Cpgi17693 6 88196335 to 88197617 1282 CpG island CpG island 17693
Cpgi17694 6 88197950 to 88199936 1986 CpG island CpG island 17694
Tssr57575 6 88198330 to 88198334 4 + TSS region transcription start site region 57575
Tssr57576 6 88198656 to 88198675 19 + TSS region transcription start site region 57576
Tssr57577 6 88199645 to 88199682 37 + TSS region transcription start site region 57577
Tssr57578 6 88199692 to 88199699 7 + TSS region transcription start site region 57578
Tssr57579 6 88199721 to 88199733 12 + TSS region transcription start site region 57579
Tssr57580 6 88200135 to 88200149 14 + TSS region transcription start site region 57580
Cpgi17695 6 88200194 to 88200507 313 CpG island CpG island 17695
Tssr57581 6 88200287 to 88200297 10 + TSS region transcription start site region 57581
Tssr57582 6 88200579 to 88200593 14 + TSS region transcription start site region 57582
Tssr57583 6 88204440 to 88204449 9 + TSS region transcription start site region 57583
Cpgi17696 6 88204454 to 88204874 420 CpG island CpG island 17696
Tssr57584 6 88205857 to 88205880 23 + TSS region transcription start site region 57584
Gm44388 6 88216245 to 88216502 257 - unclassified gene predicted gene, 44388
Tssr57585 6 88220785 to 88220796 11 + TSS region transcription start site region 57585
Dnajb8 6 88222268 to 88223256 988 + protein coding gene DnaJ heat shock protein family (Hsp40) member B8
Tssr57586 6 88222279 to 88222295 16 + TSS region transcription start site region 57586
1700031F10Rik 6 88222602 to 88225678 3076 - antisense lncRNA gene RIKEN cDNA 1700031F10 gene
Tssr61974 6 88225676 to 88225688 12 - TSS region transcription start site region 61974
Cpgi17697 6 88235911 to 88236369 458 CpG island CpG island 17697
Cpgi17698 6 88242697 to 88242916 219 CpG island CpG island 17698
Eefsec 6 88257334 to 88446539 189205 - protein coding gene eukaryotic elongation factor, selenocysteine-tRNA-specific
Tssr61975 6 88268835 to 88268844 9 - TSS region transcription start site region 61975
Tssr57587 6 88272374 to 88272379 5 + TSS region transcription start site region 57587
Tssr57588 6 88272385 to 88272391 6 + TSS region transcription start site region 57588
Tssr57589 6 88272400 to 88272407 7 + TSS region transcription start site region 57589