Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:87934385-89065656

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmces 6 87913935 to 87936629 22694 + protein coding gene 5-hydroxymethylcytosine (hmC) binding, ES cell specific
Rps19-ps9 6 87948464 to 87948877 413 - pseudogene ribosomal protein S19, pseudogene 9
Tssr61954 6 87965526 to 87965530 4 - TSS region transcription start site region 61954
Cpgi17686 6 87980290 to 87982314 2024 CpG island CpG island 17686
H1fx 6 87980421 to 87981482 1061 - protein coding gene H1 histone family, member X
Tssr61955 6 87980965 to 87980980 15 - TSS region transcription start site region 61955
Tssr61956 6 87981611 to 87981622 11 - TSS region transcription start site region 61956
Gm47286 6 87981614 to 87981741 127 - miRNA gene predicted gene, 47286
Tssr61957 6 87981629 to 87981645 16 - TSS region transcription start site region 61957
Gm5577 6 87981683 to 87984180 2497 + antisense lncRNA gene predicted gene 5577
Tssr57560 6 87981704 to 87981717 13 + TSS region transcription start site region 57560
Gm44168 6 87986191 to 87989729 3538 + unclassified gene predicted gene, 44168
Tssr61958 6 87992613 to 87992619 6 - TSS region transcription start site region 61958
4933412L11Rik 6 87993136 to 87994179 1043 - unclassified gene RIKEN cDNA 4933412L11 gene
Tssr61959 6 87993454 to 87993457 3 - TSS region transcription start site region 61959
Tssr61960 6 87994130 to 87994153 23 - TSS region transcription start site region 61960
Tssr61961 6 87994160 to 87994204 44 - TSS region transcription start site region 61961
Tssr61962 6 87994207 to 87994214 7 - TSS region transcription start site region 61962
Rab7 6 87999106 to 88045270 46164 - protein coding gene RAB7, member RAS oncogene family
Tssr57561 6 88000261 to 88000296 35 + TSS region transcription start site region 57561
Tssr61963 6 88000289 to 88000328 39 - TSS region transcription start site region 61963
Tssr61964 6 88000332 to 88000345 13 - TSS region transcription start site region 61964
Tssr61965 6 88000510 to 88000533 23 - TSS region transcription start site region 61965
Gm34872 6 88005199 to 88010650 5451 + lncRNA gene predicted gene, 34872
Tssr61966 6 88012209 to 88012217 8 - TSS region transcription start site region 61966
Tssr61967 6 88019971 to 88019972 1 - TSS region transcription start site region 61967
Tssr61968 6 88020855 to 88020871 16 - TSS region transcription start site region 61968
D6Ertd318e 6 88029845 to 88030079 234 DNA segment DNA segment, Chr 6, ERATO Doi 318, expressed
Gm44187 6 88040539 to 88042467 1928 - unclassified gene predicted gene, 44187
Tssr61969 6 88044295 to 88044331 36 - TSS region transcription start site region 61969
Cpgi17687 6 88044429 to 88045539 1110 CpG island CpG island 17687
Tssr61970 6 88045161 to 88045175 14 - TSS region transcription start site region 61970
Tssr61971 6 88045190 to 88045268 78 - TSS region transcription start site region 61971
Tssr57562 6 88045385 to 88045392 7 + TSS region transcription start site region 57562
Tssr57563 6 88048072 to 88048088 16 + TSS region transcription start site region 57563
Gm38855 6 88048137 to 88053844 5707 - lncRNA gene predicted gene, 38855
Tssr1927 6 88060866 to 88060873 7 + TSS region transcription start site region 1927
Tssr57564 6 88060879 to 88060889 10 + TSS region transcription start site region 57564
Tssr57565 6 88060923 to 88060930 7 + TSS region transcription start site region 57565
Cpgi17688 6 88074917 to 88075454 537 CpG island CpG island 17688
Tssr1928 6 88075031 to 88075043 12 - TSS region transcription start site region 1928
Tssr57566 6 88075365 to 88075397 32 + TSS region transcription start site region 57566
Cpgi17689 6 88084361 to 88085172 811 CpG island CpG island 17689
Rpn1 6 88084482 to 88105304 20822 + protein coding gene ribophorin I
Tssr57567 6 88084501 to 88084527 26 + TSS region transcription start site region 57567
Tssr57568 6 88090128 to 88090154 26 + TSS region transcription start site region 57568
Tssr57569 6 88093921 to 88093946 25 + TSS region transcription start site region 57569
Tssr57570 6 88095649 to 88095663 14 + TSS region transcription start site region 57570
Mir6376 6 88104128 to 88104258 130 - miRNA gene microRNA 6376
Cpgi17690 6 88105935 to 88106456 521 CpG island CpG island 17690
D6Mit40 6 88122406 to 88122657 251 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 40
Gm38856 6 88151561 to 88154996 3435 + lncRNA gene predicted gene, 38856
Tssr57571 6 88152375 to 88152390 15 + TSS region transcription start site region 57571
Tssr61972 6 88161044 to 88161053 9 - TSS region transcription start site region 61972
Tssr61973 6 88166161 to 88166172 11 - TSS region transcription start site region 61973
Gm38708 6 88188397 to 88190681 2284 - lincRNA gene predicted gene, 38708
Cpgi17691 6 88189316 to 88190823 1507 CpG island CpG island 17691
Tssr57572 6 88189900 to 88189907 7 + TSS region transcription start site region 57572
Cpgi17692 6 88193423 to 88194920 1497 CpG island CpG island 17692
Tssr57573 6 88193576 to 88193596 20 + TSS region transcription start site region 57573
Tssr57574 6 88193717 to 88193723 6 + TSS region transcription start site region 57574
Gata2 6 88193891 to 88207032 13141 + protein coding gene GATA binding protein 2
Cpgi17693 6 88196335 to 88197617 1282 CpG island CpG island 17693
Cpgi17694 6 88197950 to 88199936 1986 CpG island CpG island 17694
Tssr57575 6 88198330 to 88198334 4 + TSS region transcription start site region 57575
Tssr57576 6 88198656 to 88198675 19 + TSS region transcription start site region 57576
Tssr57577 6 88199645 to 88199682 37 + TSS region transcription start site region 57577
Tssr57578 6 88199692 to 88199699 7 + TSS region transcription start site region 57578
Tssr57579 6 88199721 to 88199733 12 + TSS region transcription start site region 57579
Tssr57580 6 88200135 to 88200149 14 + TSS region transcription start site region 57580
Cpgi17695 6 88200194 to 88200507 313 CpG island CpG island 17695
Tssr57581 6 88200287 to 88200297 10 + TSS region transcription start site region 57581
Tssr57582 6 88200579 to 88200593 14 + TSS region transcription start site region 57582
Tssr57583 6 88204440 to 88204449 9 + TSS region transcription start site region 57583
Cpgi17696 6 88204454 to 88204874 420 CpG island CpG island 17696
Tssr57584 6 88205857 to 88205880 23 + TSS region transcription start site region 57584
Gm44388 6 88216245 to 88216502 257 - unclassified gene predicted gene, 44388
Tssr57585 6 88220785 to 88220796 11 + TSS region transcription start site region 57585
Dnajb8 6 88222268 to 88223256 988 + protein coding gene DnaJ heat shock protein family (Hsp40) member B8
Tssr57586 6 88222279 to 88222295 16 + TSS region transcription start site region 57586
1700031F10Rik 6 88222602 to 88225678 3076 - antisense lncRNA gene RIKEN cDNA 1700031F10 gene
Tssr61974 6 88225676 to 88225688 12 - TSS region transcription start site region 61974
Cpgi17697 6 88235911 to 88236369 458 CpG island CpG island 17697
Cpgi17698 6 88242697 to 88242916 219 CpG island CpG island 17698
Eefsec 6 88257334 to 88446539 189205 - protein coding gene eukaryotic elongation factor, selenocysteine-tRNA-specific
Tssr61975 6 88268835 to 88268844 9 - TSS region transcription start site region 61975
Tssr57587 6 88272374 to 88272379 5 + TSS region transcription start site region 57587
Tssr57588 6 88272385 to 88272391 6 + TSS region transcription start site region 57588
Tssr57589 6 88272400 to 88272407 7 + TSS region transcription start site region 57589
Gm44265 6 88353142 to 88353606 464 - sense intronic lncRNA gene predicted gene, 44265
Tssr61976 6 88373915 to 88373919 4 - TSS region transcription start site region 61976
Gm25178 6 88405977 to 88406301 324 + unclassified non-coding RNA gene predicted gene, 25178
Gm44264 6 88445687 to 88446513 826 + antisense lncRNA gene predicted gene, 44264
Cpgi17699 6 88445921 to 88446857 936 CpG island CpG island 17699
Tssr61977 6 88446491 to 88446539 48 - TSS region transcription start site region 61977
Cpgi17700 6 88465254 to 88465937 683 CpG island CpG island 17700
Tssr61978 6 88465264 to 88465304 40 - TSS region transcription start site region 61978
Tssr57590 6 88465417 to 88465482 65 + TSS region transcription start site region 57590
Ruvbl1 6 88465423 to 88497566 32143 + protein coding gene RuvB-like protein 1
Tssr57591 6 88465483 to 88465495 12 + TSS region transcription start site region 57591
D6Mit226 6 88474359 to 88474505 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 226
Gm46965 6 88491625 to 88496401 4776 + protein coding gene predicted gene, 46965
Cpgi17701 6 88499385 to 88500656 1271 CpG island CpG island 17701
Gm44170 6 88503605 to 88504277 672 + antisense lncRNA gene predicted gene, 44170
Sec61a1 6 88503607 to 88518800 15193 - protein coding gene Sec61 alpha 1 subunit (S. cerevisiae)
Tssr61979 6 88504980 to 88504984 4 - TSS region transcription start site region 61979
Tssr61980 6 88508613 to 88508647 34 - TSS region transcription start site region 61980
Tssr61981 6 88515408 to 88515426 18 - TSS region transcription start site region 61981
Cpgi17702 6 88518161 to 88519491 1330 CpG island CpG island 17702
Tssr61982 6 88518735 to 88518757 22 - TSS region transcription start site region 61982
Tssr61983 6 88518760 to 88518880 120 - TSS region transcription start site region 61983
Gm44430 6 88519013 to 88520007 994 + unclassified gene predicted gene, 44430
Kbtbd12 6 88547722 to 88627448 79726 - protein coding gene kelch repeat and BTB (POZ) domain containing 12
D6Mit261.1 6 88574968 to 88575090 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 261.1
D6Mit261 6 88575060 to 88575178 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 261
Stheal5 6 88575060 to 88575178 118 QTL soft tissue heal 5
Tssr57592 6 88575988 to 88575989 1 + TSS region transcription start site region 57592
Tssr1929 6 88578311 to 88578312 1 + TSS region transcription start site region 1929
Tssr61984 6 88601303 to 88601308 5 - TSS region transcription start site region 61984
Cpgi17703 6 88627224 to 88627878 654 CpG island CpG island 17703
Tssr61985 6 88627422 to 88627454 32 - TSS region transcription start site region 61985
Tssr57593 6 88636035 to 88636039 4 + TSS region transcription start site region 57593
Gm26588 6 88716422 to 88725860 9438 - antisense lncRNA gene predicted gene, 26588
Cpgi17704 6 88723907 to 88725282 1375 CpG island CpG island 17704
Mgll 6 88724412 to 88828360 103948 + protein coding gene monoglyceride lipase
Tssr57594 6 88724427 to 88724430 3 + TSS region transcription start site region 57594
Tssr57595 6 88724450 to 88724461 11 + TSS region transcription start site region 57595
Tssr57596 6 88724462 to 88724478 16 + TSS region transcription start site region 57596
Tssr57597 6 88724489 to 88724502 13 + TSS region transcription start site region 57597
Tssr57598 6 88724667 to 88724751 84 + TSS region transcription start site region 57598
Tssr57599 6 88724876 to 88724924 48 + TSS region transcription start site region 57599
Tssr61986 6 88726779 to 88726801 22 - TSS region transcription start site region 61986
Tssr57600 6 88733550 to 88733580 30 + TSS region transcription start site region 57600
Tssr57601 6 88733582 to 88733586 4 + TSS region transcription start site region 57601
Tssr57602 6 88733595 to 88733612 17 + TSS region transcription start site region 57602
Gm44005 6 88738192 to 88741364 3172 + unclassified gene predicted gene, 44005
Gm38859 6 88738613 to 88744194 5581 - lncRNA gene predicted gene, 38859
D6Mit190 6 88741422 to 88741570 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 190
Gm43999 6 88742727 to 88745615 2888 + unclassified gene predicted gene, 43999
Cpgi17705 6 88776707 to 88776864 157 CpG island CpG island 17705
Gm43937 6 88784330 to 88787451 3121 - unclassified gene predicted gene, 43937
Tssr1930 6 88798214 to 88798219 5 + TSS region transcription start site region 1930
Gm44001 6 88802243 to 88806015 3772 + unclassified gene predicted gene, 44001
Tssr1931 6 88802728 to 88802731 3 + TSS region transcription start site region 1931
Tssr57603 6 88820157 to 88820169 12 + TSS region transcription start site region 57603
Tssr61987 6 88825844 to 88825848 4 - TSS region transcription start site region 61987
Tssr57604 6 88827394 to 88827402 8 + TSS region transcription start site region 57604
Tssr57605 6 88835207 to 88835210 3 + TSS region transcription start site region 57605
Tssr57606 6 88835269 to 88835273 4 + TSS region transcription start site region 57606
Abtb1 6 88835914 to 88841984 6070 - protein coding gene ankyrin repeat and BTB (POZ) domain containing 1
Cpgi17706 6 88836207 to 88836554 347 CpG island CpG island 17706
Tssr61988 6 88837442 to 88837451 9 - TSS region transcription start site region 61988
Cpgi17707 6 88839263 to 88839635 372 CpG island CpG island 17707
Cpgi17708 6 88841321 to 88843290 1969 CpG island CpG island 17708
Tssr61989 6 88841828 to 88841844 16 - TSS region transcription start site region 61989
Tssr61990 6 88841851 to 88841905 54 - TSS region transcription start site region 61990
Tssr61991 6 88841936 to 88841943 7 - TSS region transcription start site region 61991
Podxl2 6 88842558 to 88875044 32486 - protein coding gene podocalyxin-like 2
Gm15612 6 88842854 to 88847274 4420 + antisense lncRNA gene predicted gene 15612
Cpgi17709 6 88873896 to 88875554 1658 CpG island CpG island 17709
Tssr61992 6 88874049 to 88874070 21 - TSS region transcription start site region 61992
Tssr61993 6 88874758 to 88874784 26 - TSS region transcription start site region 61993
Tssr61994 6 88874984 to 88875030 46 - TSS region transcription start site region 61994
Tssr61995 6 88875035 to 88875053 18 - TSS region transcription start site region 61995
D6Mit364 6 88880212 to 88880291 79 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 364
Gm36189 6 88882655 to 88883177 522 + pseudogene predicted gene, 36189
Mcm2 6 88883474 to 88898780 15306 - protein coding gene minichromosome maintenance complex component 2
Tssr61996 6 88897380 to 88897397 17 - TSS region transcription start site region 61996
Cpgi17710 6 88898351 to 88898963 612 CpG island CpG island 17710
Tssr61997 6 88898664 to 88898713 49 - TSS region transcription start site region 61997
Cpgi17711 6 88901887 to 88902962 1075 CpG island CpG island 17711
Tpra1 6 88902251 to 88912238 9987 + protein coding gene transmembrane protein, adipocyte asscociated 1
Tssr57607 6 88902293 to 88902351 58 + TSS region transcription start site region 57607
Tssr57608 6 88902386 to 88902414 28 + TSS region transcription start site region 57608
Tssr57609 6 88902415 to 88902428 13 + TSS region transcription start site region 57609
Tssr57610 6 88902454 to 88902535 81 + TSS region transcription start site region 57610
Tssr57611 6 88902545 to 88902559 14 + TSS region transcription start site region 57611
Tssr61998 6 88902748 to 88902768 20 - TSS region transcription start site region 61998
Tssr61999 6 88903891 to 88903930 39 - TSS region transcription start site region 61999
Gm36268 6 88914789 to 88917100 2311 - lncRNA gene predicted gene, 36268
Gm44178 6 88919708 to 88922637 2929 + unclassified gene predicted gene, 44178
Gm36354 6 88939921 to 88946480 6559 + lncRNA gene predicted gene, 36354
Tssr57612 6 88944565 to 88944574 9 + TSS region transcription start site region 57612
Gm36409 6 88964652 to 88973887 9235 - lncRNA gene predicted gene, 36409
Fcsa1 6 88981024 to 88981170 146 QTL femoral cross-sectional area 1
Pas1c 6 88981024 to 88981170 146 QTL pulmonary adenoma susceptibility 1c
D6Mit263 6 88981024 to 88981170 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 263
Gm36505 6 88997977 to 89000462 2485 + lncRNA gene predicted gene, 36505
Tssr57613 6 89000609 to 89000626 17 + TSS region transcription start site region 57613
Tssr62000 6 89004167 to 89004170 3 - TSS region transcription start site region 62000
Gm36639 6 89023837 to 89025913 2076 + lncRNA gene predicted gene, 36639
D6Mit248 6 89043668 to 89043800 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 248