Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:87933137-88168844

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmces 6 87913935 to 87936629 22694 + protein coding gene 5-hydroxymethylcytosine (hmC) binding, ES cell specific
Rps19-ps9 6 87948464 to 87948877 413 - pseudogene ribosomal protein S19, pseudogene 9
Tssr61954 6 87965526 to 87965530 4 - TSS region transcription start site region 61954
Cpgi17686 6 87980290 to 87982314 2024 CpG island CpG island 17686
H1fx 6 87980421 to 87981482 1061 - protein coding gene H1 histone family, member X
Tssr61955 6 87980965 to 87980980 15 - TSS region transcription start site region 61955
Tssr61956 6 87981611 to 87981622 11 - TSS region transcription start site region 61956
Gm47286 6 87981614 to 87981741 127 - miRNA gene predicted gene, 47286
Tssr61957 6 87981629 to 87981645 16 - TSS region transcription start site region 61957
Gm5577 6 87981683 to 87984180 2497 + antisense lncRNA gene predicted gene 5577
Tssr57560 6 87981704 to 87981717 13 + TSS region transcription start site region 57560
Gm44168 6 87986191 to 87989729 3538 + unclassified gene predicted gene, 44168
Tssr61958 6 87992613 to 87992619 6 - TSS region transcription start site region 61958
4933412L11Rik 6 87993136 to 87994179 1043 - unclassified gene RIKEN cDNA 4933412L11 gene
Tssr61959 6 87993454 to 87993457 3 - TSS region transcription start site region 61959
Tssr61960 6 87994130 to 87994153 23 - TSS region transcription start site region 61960
Tssr61961 6 87994160 to 87994204 44 - TSS region transcription start site region 61961
Tssr61962 6 87994207 to 87994214 7 - TSS region transcription start site region 61962
Rab7 6 87999106 to 88045270 46164 - protein coding gene RAB7, member RAS oncogene family
Tssr57561 6 88000261 to 88000296 35 + TSS region transcription start site region 57561
Tssr61963 6 88000289 to 88000328 39 - TSS region transcription start site region 61963
Tssr61964 6 88000332 to 88000345 13 - TSS region transcription start site region 61964
Tssr61965 6 88000510 to 88000533 23 - TSS region transcription start site region 61965
Gm34872 6 88005199 to 88010650 5451 + lncRNA gene predicted gene, 34872
Tssr61966 6 88012209 to 88012217 8 - TSS region transcription start site region 61966
Tssr61967 6 88019971 to 88019972 1 - TSS region transcription start site region 61967
Tssr61968 6 88020855 to 88020871 16 - TSS region transcription start site region 61968
D6Ertd318e 6 88029845 to 88030079 234 DNA segment DNA segment, Chr 6, ERATO Doi 318, expressed
Gm44187 6 88040539 to 88042467 1928 - unclassified gene predicted gene, 44187
Tssr61969 6 88044295 to 88044331 36 - TSS region transcription start site region 61969
Cpgi17687 6 88044429 to 88045539 1110 CpG island CpG island 17687
Tssr61970 6 88045161 to 88045175 14 - TSS region transcription start site region 61970
Tssr61971 6 88045190 to 88045268 78 - TSS region transcription start site region 61971
Tssr57562 6 88045385 to 88045392 7 + TSS region transcription start site region 57562
Tssr57563 6 88048072 to 88048088 16 + TSS region transcription start site region 57563
Gm38855 6 88048137 to 88053844 5707 - lncRNA gene predicted gene, 38855
Tssr1927 6 88060866 to 88060873 7 + TSS region transcription start site region 1927
Tssr57564 6 88060879 to 88060889 10 + TSS region transcription start site region 57564
Tssr57565 6 88060923 to 88060930 7 + TSS region transcription start site region 57565
Cpgi17688 6 88074917 to 88075454 537 CpG island CpG island 17688
Tssr1928 6 88075031 to 88075043 12 - TSS region transcription start site region 1928
Tssr57566 6 88075365 to 88075397 32 + TSS region transcription start site region 57566
Cpgi17689 6 88084361 to 88085172 811 CpG island CpG island 17689
Rpn1 6 88084482 to 88105304 20822 + protein coding gene ribophorin I
Tssr57567 6 88084501 to 88084527 26 + TSS region transcription start site region 57567
Tssr57568 6 88090128 to 88090154 26 + TSS region transcription start site region 57568
Tssr57569 6 88093921 to 88093946 25 + TSS region transcription start site region 57569
Tssr57570 6 88095649 to 88095663 14 + TSS region transcription start site region 57570
Mir6376 6 88104128 to 88104258 130 - miRNA gene microRNA 6376
Cpgi17690 6 88105935 to 88106456 521 CpG island CpG island 17690
D6Mit40 6 88122406 to 88122657 251 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 40
Gm38856 6 88151561 to 88154996 3435 + lncRNA gene predicted gene, 38856
Tssr57571 6 88152375 to 88152390 15 + TSS region transcription start site region 57571
Tssr61972 6 88161044 to 88161053 9 - TSS region transcription start site region 61972
Tssr61973 6 88166161 to 88166172 11 - TSS region transcription start site region 61973