Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:87863576-88523596

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17684 6 87887700 to 87888239 539 CpG island CpG island 17684
Copg1 6 87887819 to 87913595 25776 + protein coding gene coatomer protein complex, subunit gamma 1
Tssr57557 6 87887888 to 87888016 128 + TSS region transcription start site region 57557
Gm26636 6 87908843 to 87914459 5616 - antisense lncRNA gene predicted gene, 26636
Cpgi17685 6 87913666 to 87914890 1224 CpG island CpG island 17685
Hmces 6 87913935 to 87936629 22694 + protein coding gene 5-hydroxymethylcytosine (hmC) binding, ES cell specific
Tssr57558 6 87913936 to 87913976 40 + TSS region transcription start site region 57558
Tssr57559 6 87913986 to 87913999 13 + TSS region transcription start site region 57559
Gm19038 6 87928874 to 87930285 1411 - pseudogene predicted gene, 19038
Rps19-ps9 6 87948464 to 87948877 413 - pseudogene ribosomal protein S19, pseudogene 9
Tssr61954 6 87965526 to 87965530 4 - TSS region transcription start site region 61954
Cpgi17686 6 87980290 to 87982314 2024 CpG island CpG island 17686
H1fx 6 87980421 to 87981482 1061 - protein coding gene H1 histone family, member X
Tssr61955 6 87980965 to 87980980 15 - TSS region transcription start site region 61955
Tssr61956 6 87981611 to 87981622 11 - TSS region transcription start site region 61956
Gm47286 6 87981614 to 87981741 127 - miRNA gene predicted gene, 47286
Tssr61957 6 87981629 to 87981645 16 - TSS region transcription start site region 61957
Gm5577 6 87981683 to 87984180 2497 + antisense lncRNA gene predicted gene 5577
Tssr57560 6 87981704 to 87981717 13 + TSS region transcription start site region 57560
Gm44168 6 87986191 to 87989729 3538 + unclassified gene predicted gene, 44168
Tssr61958 6 87992613 to 87992619 6 - TSS region transcription start site region 61958
4933412L11Rik 6 87993136 to 87994179 1043 - unclassified gene RIKEN cDNA 4933412L11 gene
Tssr61959 6 87993454 to 87993457 3 - TSS region transcription start site region 61959
Tssr61960 6 87994130 to 87994153 23 - TSS region transcription start site region 61960
Tssr61961 6 87994160 to 87994204 44 - TSS region transcription start site region 61961
Tssr61962 6 87994207 to 87994214 7 - TSS region transcription start site region 61962
Rab7 6 87999106 to 88045270 46164 - protein coding gene RAB7, member RAS oncogene family
Tssr57561 6 88000261 to 88000296 35 + TSS region transcription start site region 57561
Tssr61963 6 88000289 to 88000328 39 - TSS region transcription start site region 61963
Tssr61964 6 88000332 to 88000345 13 - TSS region transcription start site region 61964
Tssr61965 6 88000510 to 88000533 23 - TSS region transcription start site region 61965
Gm34872 6 88005199 to 88010650 5451 + lncRNA gene predicted gene, 34872
Tssr61966 6 88012209 to 88012217 8 - TSS region transcription start site region 61966
Tssr61967 6 88019971 to 88019972 1 - TSS region transcription start site region 61967
Tssr61968 6 88020855 to 88020871 16 - TSS region transcription start site region 61968
D6Ertd318e 6 88029845 to 88030079 234 DNA segment DNA segment, Chr 6, ERATO Doi 318, expressed
Gm44187 6 88040539 to 88042467 1928 - unclassified gene predicted gene, 44187
Tssr61969 6 88044295 to 88044331 36 - TSS region transcription start site region 61969
Cpgi17687 6 88044429 to 88045539 1110 CpG island CpG island 17687
Tssr61970 6 88045161 to 88045175 14 - TSS region transcription start site region 61970
Tssr61971 6 88045190 to 88045268 78 - TSS region transcription start site region 61971
Tssr57562 6 88045385 to 88045392 7 + TSS region transcription start site region 57562
Tssr57563 6 88048072 to 88048088 16 + TSS region transcription start site region 57563
Gm38855 6 88048137 to 88053844 5707 - lncRNA gene predicted gene, 38855
Tssr1927 6 88060866 to 88060873 7 + TSS region transcription start site region 1927
Tssr57564 6 88060879 to 88060889 10 + TSS region transcription start site region 57564
Tssr57565 6 88060923 to 88060930 7 + TSS region transcription start site region 57565
Cpgi17688 6 88074917 to 88075454 537 CpG island CpG island 17688
Tssr1928 6 88075031 to 88075043 12 - TSS region transcription start site region 1928
Tssr57566 6 88075365 to 88075397 32 + TSS region transcription start site region 57566
Cpgi17689 6 88084361 to 88085172 811 CpG island CpG island 17689
Rpn1 6 88084482 to 88105304 20822 + protein coding gene ribophorin I
Tssr57567 6 88084501 to 88084527 26 + TSS region transcription start site region 57567
Tssr57568 6 88090128 to 88090154 26 + TSS region transcription start site region 57568
Tssr57569 6 88093921 to 88093946 25 + TSS region transcription start site region 57569
Tssr57570 6 88095649 to 88095663 14 + TSS region transcription start site region 57570
Mir6376 6 88104128 to 88104258 130 - miRNA gene microRNA 6376
Cpgi17690 6 88105935 to 88106456 521 CpG island CpG island 17690
D6Mit40 6 88122406 to 88122657 251 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 40
Gm38856 6 88151561 to 88154996 3435 + lncRNA gene predicted gene, 38856
Tssr57571 6 88152375 to 88152390 15 + TSS region transcription start site region 57571
Tssr61972 6 88161044 to 88161053 9 - TSS region transcription start site region 61972
Tssr61973 6 88166161 to 88166172 11 - TSS region transcription start site region 61973
Gm38708 6 88188397 to 88190681 2284 - lincRNA gene predicted gene, 38708
Cpgi17691 6 88189316 to 88190823 1507 CpG island CpG island 17691
Tssr57572 6 88189900 to 88189907 7 + TSS region transcription start site region 57572
Cpgi17692 6 88193423 to 88194920 1497 CpG island CpG island 17692
Tssr57573 6 88193576 to 88193596 20 + TSS region transcription start site region 57573
Tssr57574 6 88193717 to 88193723 6 + TSS region transcription start site region 57574
Gata2 6 88193891 to 88207032 13141 + protein coding gene GATA binding protein 2
Cpgi17693 6 88196335 to 88197617 1282 CpG island CpG island 17693
Cpgi17694 6 88197950 to 88199936 1986 CpG island CpG island 17694
Tssr57575 6 88198330 to 88198334 4 + TSS region transcription start site region 57575
Tssr57576 6 88198656 to 88198675 19 + TSS region transcription start site region 57576
Tssr57577 6 88199645 to 88199682 37 + TSS region transcription start site region 57577
Tssr57578 6 88199692 to 88199699 7 + TSS region transcription start site region 57578
Tssr57579 6 88199721 to 88199733 12 + TSS region transcription start site region 57579
Tssr57580 6 88200135 to 88200149 14 + TSS region transcription start site region 57580
Cpgi17695 6 88200194 to 88200507 313 CpG island CpG island 17695
Tssr57581 6 88200287 to 88200297 10 + TSS region transcription start site region 57581
Tssr57582 6 88200579 to 88200593 14 + TSS region transcription start site region 57582
Tssr57583 6 88204440 to 88204449 9 + TSS region transcription start site region 57583
Cpgi17696 6 88204454 to 88204874 420 CpG island CpG island 17696
Tssr57584 6 88205857 to 88205880 23 + TSS region transcription start site region 57584
Gm44388 6 88216245 to 88216502 257 - unclassified gene predicted gene, 44388
Tssr57585 6 88220785 to 88220796 11 + TSS region transcription start site region 57585
Dnajb8 6 88222268 to 88223256 988 + protein coding gene DnaJ heat shock protein family (Hsp40) member B8
Tssr57586 6 88222279 to 88222295 16 + TSS region transcription start site region 57586
1700031F10Rik 6 88222602 to 88225678 3076 - antisense lncRNA gene RIKEN cDNA 1700031F10 gene
Tssr61974 6 88225676 to 88225688 12 - TSS region transcription start site region 61974
Cpgi17697 6 88235911 to 88236369 458 CpG island CpG island 17697
Cpgi17698 6 88242697 to 88242916 219 CpG island CpG island 17698
Eefsec 6 88257334 to 88446539 189205 - protein coding gene eukaryotic elongation factor, selenocysteine-tRNA-specific
Tssr61975 6 88268835 to 88268844 9 - TSS region transcription start site region 61975
Tssr57587 6 88272374 to 88272379 5 + TSS region transcription start site region 57587
Tssr57588 6 88272385 to 88272391 6 + TSS region transcription start site region 57588
Tssr57589 6 88272400 to 88272407 7 + TSS region transcription start site region 57589
Gm44265 6 88353142 to 88353606 464 - sense intronic lncRNA gene predicted gene, 44265
Tssr61976 6 88373915 to 88373919 4 - TSS region transcription start site region 61976
Gm25178 6 88405977 to 88406301 324 + unclassified non-coding RNA gene predicted gene, 25178
Gm44264 6 88445687 to 88446513 826 + antisense lncRNA gene predicted gene, 44264
Cpgi17699 6 88445921 to 88446857 936 CpG island CpG island 17699
Tssr61977 6 88446491 to 88446539 48 - TSS region transcription start site region 61977
Cpgi17700 6 88465254 to 88465937 683 CpG island CpG island 17700
Tssr61978 6 88465264 to 88465304 40 - TSS region transcription start site region 61978
Tssr57590 6 88465417 to 88465482 65 + TSS region transcription start site region 57590
Ruvbl1 6 88465423 to 88497566 32143 + protein coding gene RuvB-like protein 1
Tssr57591 6 88465483 to 88465495 12 + TSS region transcription start site region 57591
D6Mit226 6 88474359 to 88474505 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 226
Gm46965 6 88491625 to 88496401 4776 + protein coding gene predicted gene, 46965
Cpgi17701 6 88499385 to 88500656 1271 CpG island CpG island 17701
Gm44170 6 88503605 to 88504277 672 + antisense lncRNA gene predicted gene, 44170
Sec61a1 6 88503607 to 88518800 15193 - protein coding gene Sec61 alpha 1 subunit (S. cerevisiae)
Tssr61979 6 88504980 to 88504984 4 - TSS region transcription start site region 61979
Tssr61980 6 88508613 to 88508647 34 - TSS region transcription start site region 61980
Tssr61981 6 88515408 to 88515426 18 - TSS region transcription start site region 61981
Cpgi17702 6 88518161 to 88519491 1330 CpG island CpG island 17702
Tssr61982 6 88518735 to 88518757 22 - TSS region transcription start site region 61982
Tssr61983 6 88518760 to 88518880 120 - TSS region transcription start site region 61983
Gm44430 6 88519013 to 88520007 994 + unclassified gene predicted gene, 44430