Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:87608396-88069178

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aplf 6 87628424 to 87672193 43769 - protein coding gene aprataxin and PNKP like factor
Gm46964 6 87636986 to 87639836 2850 + lncRNA gene predicted gene, 46964
Gm38852 6 87651089 to 87653700 2611 - lncRNA gene predicted gene, 38852
Tssr57546 6 87657748 to 87657759 11 + TSS region transcription start site region 57546
Gm44097 6 87657754 to 87663823 6069 + antisense lncRNA gene predicted gene, 44097
Tssr57547 6 87657777 to 87657784 7 + TSS region transcription start site region 57547
Cpgi17678 6 87671763 to 87672116 353 CpG island CpG island 17678
Tssr61924 6 87672121 to 87672138 17 - TSS region transcription start site region 61924
Tssr61925 6 87672142 to 87672179 37 - TSS region transcription start site region 61925
Tssr61926 6 87672190 to 87672202 12 - TSS region transcription start site region 61926
1810020O05Rik 6 87675593 to 87690847 15254 - lincRNA gene Riken cDNA 1810020O05 gene
E230015B07Rik 6 87675832 to 87681094 5262 + bidirectional promoter lncRNA gene RIKEN cDNA E230015B07 gene
Tssr61927 6 87690819 to 87690852 33 - TSS region transcription start site region 61927
D6Mit228 6 87713684 to 87713789 105 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 228
Tssr61928 6 87722741 to 87722755 14 - TSS region transcription start site region 61928
Tssr61929 6 87722761 to 87722780 19 - TSS region transcription start site region 61929
Tssr61930 6 87722786 to 87722801 15 - TSS region transcription start site region 61930
Gm44210 6 87729964 to 87731148 1184 - antisense lncRNA gene predicted gene, 44210
Cpgi17679 6 87730376 to 87732043 1667 CpG island CpG island 17679
Efcc1 6 87730869 to 87755908 25039 + protein coding gene EF hand and coiled-coil domain containing 1
Tssr61931 6 87731438 to 87731472 34 - TSS region transcription start site region 61931
Tssr61932 6 87731498 to 87731533 35 - TSS region transcription start site region 61932
Cpgi17680 6 87732367 to 87733173 806 CpG island CpG island 17680
Tssr57548 6 87732557 to 87732594 37 + TSS region transcription start site region 57548
Gm34414 6 87741036 to 87749187 8151 - lncRNA gene predicted gene, 34414
Tssr57549 6 87742326 to 87742339 13 + TSS region transcription start site region 57549
Tssr61933 6 87745036 to 87745047 11 - TSS region transcription start site region 61933
Tssr61934 6 87745273 to 87745300 27 - TSS region transcription start site region 61934
Gm5879 6 87764996 to 87766204 1208 - pseudogene predicted gene 5879
Tssr57550 6 87776129 to 87776149 20 + TSS region transcription start site region 57550
Gm43904 6 87776143 to 87777480 1337 + lincRNA gene predicted gene, 43904
Tssr57551 6 87778064 to 87778082 18 + TSS region transcription start site region 57551
Gp9 6 87778072 to 87779768 1696 + protein coding gene glycoprotein 9 (platelet)
Tssr57552 6 87778084 to 87778112 28 + TSS region transcription start site region 57552
Rab43 6 87788853 to 87812164 23311 - protein coding gene RAB43, member RAS oncogene family
Gm45140 6 87788861 to 87835795 46934 - protein coding gene predicted gene 45140
Tssr61935 6 87790261 to 87790271 10 - TSS region transcription start site region 61935
Tssr1926 6 87791448 to 87791463 15 - TSS region transcription start site region 1926
Gm44423 6 87796070 to 87799227 3157 - unclassified gene predicted gene, 44423
9930120I10Rik 6 87805472 to 87806336 864 - unclassified gene RIKEN cDNA 9930120I10 gene
Tssr61936 6 87807539 to 87807576 37 - TSS region transcription start site region 61936
Tssr61937 6 87809769 to 87809787 18 - TSS region transcription start site region 61937
Tssr61938 6 87809792 to 87809814 22 - TSS region transcription start site region 61938
Cpgi17681 6 87810854 to 87812555 1701 CpG island CpG island 17681
Tssr57553 6 87810967 to 87810982 15 + TSS region transcription start site region 57553
Tssr61939 6 87811652 to 87811667 15 - TSS region transcription start site region 61939
Tssr61940 6 87811771 to 87811802 31 - TSS region transcription start site region 61940
Tssr61941 6 87811810 to 87811842 32 - TSS region transcription start site region 61941
Isy1 6 87818447 to 87838759 20312 - protein coding gene ISY1 splicing factor homolog
Tssr61942 6 87826517 to 87826520 3 - TSS region transcription start site region 61942
B130021K23Rik 6 87830274 to 87832866 2592 - unclassified gene RIKEN cDNA B130021K23 gene
Cpgi17682 6 87838396 to 87839178 782 CpG island CpG island 17682
Tssr61943 6 87838671 to 87838792 121 - TSS region transcription start site region 61943
Tssr57554 6 87839091 to 87839101 10 + TSS region transcription start site region 57554
Cnbp 6 87842615 to 87851106 8491 - protein coding gene cellular nucleic acid binding protein
Tssr61944 6 87843461 to 87843539 78 - TSS region transcription start site region 61944
Tssr61945 6 87843626 to 87843692 66 - TSS region transcription start site region 61945
Tssr57555 6 87843742 to 87843780 38 + TSS region transcription start site region 57555
Tssr61946 6 87843795 to 87843855 60 - TSS region transcription start site region 61946
Tssr61947 6 87844017 to 87844088 71 - TSS region transcription start site region 61947
Tssr61948 6 87845309 to 87845329 20 - TSS region transcription start site region 61948
Tssr61949 6 87845694 to 87845707 13 - TSS region transcription start site region 61949
Cpgi17683 6 87850264 to 87851576 1312 CpG island CpG island 17683
Tssr61950 6 87850972 to 87850983 11 - TSS region transcription start site region 61950
Tssr61951 6 87851011 to 87851054 43 - TSS region transcription start site region 61951
Tssr61952 6 87851074 to 87851085 11 - TSS region transcription start site region 61952
Tssr57556 6 87851171 to 87851243 72 + TSS region transcription start site region 57556
Gm44064 6 87851209 to 87852295 1086 + unclassified gene predicted gene, 44064
Tssr61953 6 87851529 to 87851565 36 - TSS region transcription start site region 61953
Cpgi17684 6 87887700 to 87888239 539 CpG island CpG island 17684
Copg1 6 87887819 to 87913595 25776 + protein coding gene coatomer protein complex, subunit gamma 1
Tssr57557 6 87887888 to 87888016 128 + TSS region transcription start site region 57557
Gm26636 6 87908843 to 87914459 5616 - antisense lncRNA gene predicted gene, 26636
Cpgi17685 6 87913666 to 87914890 1224 CpG island CpG island 17685
Hmces 6 87913935 to 87936629 22694 + protein coding gene 5-hydroxymethylcytosine (hmC) binding, ES cell specific
Tssr57558 6 87913936 to 87913976 40 + TSS region transcription start site region 57558
Tssr57559 6 87913986 to 87913999 13 + TSS region transcription start site region 57559
Gm19038 6 87928874 to 87930285 1411 - pseudogene predicted gene, 19038
Rps19-ps9 6 87948464 to 87948877 413 - pseudogene ribosomal protein S19, pseudogene 9
Tssr61954 6 87965526 to 87965530 4 - TSS region transcription start site region 61954
Cpgi17686 6 87980290 to 87982314 2024 CpG island CpG island 17686
H1fx 6 87980421 to 87981482 1061 - protein coding gene H1 histone family, member X
Tssr61955 6 87980965 to 87980980 15 - TSS region transcription start site region 61955
Tssr61956 6 87981611 to 87981622 11 - TSS region transcription start site region 61956
Gm47286 6 87981614 to 87981741 127 - miRNA gene predicted gene, 47286
Tssr61957 6 87981629 to 87981645 16 - TSS region transcription start site region 61957
Gm5577 6 87981683 to 87984180 2497 + antisense lncRNA gene predicted gene 5577
Tssr57560 6 87981704 to 87981717 13 + TSS region transcription start site region 57560
Gm44168 6 87986191 to 87989729 3538 + unclassified gene predicted gene, 44168
Tssr61958 6 87992613 to 87992619 6 - TSS region transcription start site region 61958
4933412L11Rik 6 87993136 to 87994179 1043 - unclassified gene RIKEN cDNA 4933412L11 gene
Tssr61959 6 87993454 to 87993457 3 - TSS region transcription start site region 61959
Tssr61960 6 87994130 to 87994153 23 - TSS region transcription start site region 61960
Tssr61961 6 87994160 to 87994204 44 - TSS region transcription start site region 61961
Tssr61962 6 87994207 to 87994214 7 - TSS region transcription start site region 61962
Rab7 6 87999106 to 88045270 46164 - protein coding gene RAB7, member RAS oncogene family
Tssr57561 6 88000261 to 88000296 35 + TSS region transcription start site region 57561
Tssr61963 6 88000289 to 88000328 39 - TSS region transcription start site region 61963
Tssr61964 6 88000332 to 88000345 13 - TSS region transcription start site region 61964
Tssr61965 6 88000510 to 88000533 23 - TSS region transcription start site region 61965
Gm34872 6 88005199 to 88010650 5451 + lncRNA gene predicted gene, 34872
Tssr61966 6 88012209 to 88012217 8 - TSS region transcription start site region 61966
Tssr61967 6 88019971 to 88019972 1 - TSS region transcription start site region 61967
Tssr61968 6 88020855 to 88020871 16 - TSS region transcription start site region 61968
D6Ertd318e 6 88029845 to 88030079 234 DNA segment DNA segment, Chr 6, ERATO Doi 318, expressed
Gm44187 6 88040539 to 88042467 1928 - unclassified gene predicted gene, 44187
Tssr61969 6 88044295 to 88044331 36 - TSS region transcription start site region 61969
Cpgi17687 6 88044429 to 88045539 1110 CpG island CpG island 17687
Tssr61970 6 88045161 to 88045175 14 - TSS region transcription start site region 61970
Tssr61971 6 88045190 to 88045268 78 - TSS region transcription start site region 61971
Tssr57562 6 88045385 to 88045392 7 + TSS region transcription start site region 57562
Tssr57563 6 88048072 to 88048088 16 + TSS region transcription start site region 57563
Gm38855 6 88048137 to 88053844 5707 - lncRNA gene predicted gene, 38855
Tssr1927 6 88060866 to 88060873 7 + TSS region transcription start site region 1927
Tssr57564 6 88060879 to 88060889 10 + TSS region transcription start site region 57564
Tssr57565 6 88060923 to 88060930 7 + TSS region transcription start site region 57565